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Binary Probes for Nucleic Acid Analysis

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Kolpashchikov, Dmitry M.·2010·Chemical Reviews

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Abstract

The advances in the development of binary probe (BPs) and their improved selectivity in comparison with other hybridization-based techniques were studied. The first BP, which used Förster resonance energy transfer (FRET), was suggested in 1988. A commonly adopted BP architecture employs the different affinity mode BPs. In this design one strand with a longer analyte binding arm binds tightly to the position abutting to the single-nucleotide polymorphisms (SNP) site. A second shorter analyte binding arm interrogates the SNP site by forming stable hybrid only with the perfectly matched sequence. The design of BPs employs self-assembly of more than two nucleic acid components. The same principle is adopted by DNA nanotechnology, which deals with constructing objects and functionally active assemblies from DNA molecules. Newly designed constructs based on aptamers, DNA junctions, and DNA enzymes offer an opportunity to utilize DNA probes that avoid direct covalent attachment with organic dyes.

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Silverman, A. P., Baron, E. J., & Kool, E. T. (2006) · ChemBioChem · doi:10.1002/cbic.200600278 · Cited by 32
Pre-Processing of Microarray Data and Analysis of Differential Expression
Durinck, S. (2008) · Methods in molecular biology · doi:10.1007/978-1-60327-159-2_4 · Cited by 30
Detection of nucleic acids in situ: novel oligonucleotide analogues for target-assembled DNA-mounted exciplexes
Bichenkova, E. V., Gbaj, A. M., Walsh, L., Savage, H. E., Rogert, C., Sardarian, A. R., Etchells, L. L., & Douglas, K. T. (2007) · Organic & Biomolecular Chemistry · doi:10.1039/b700293a · Cited by 28
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A binary Cy3 aptamer probe composed of folded modules
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Deoxyribozymes that recode sequence information
Tabor, J. J. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl176 · Cited by 18
Split hybridisation probes for electrochemical typing of single-nucleotide polymorphisms
Lucarelli, F., Capponcelli, S., Marrazza, G., Sangiorgi, L., & Mascini, M. (2008) · The Analyst · doi:10.1039/b806514d · Cited by 12
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Gold Nanoparticles in Chemical and Biological Sensing
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Reactions Templated by Nucleic Acids: More Ways to Translate Oligonucleotide‐Based Instructions into Emerging Function
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Fluorescent monitoring of RNA assembly and processing using the split-spinach aptamer
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See all 298

Authors: Kolpashchikov, D. M.
Venue: Chemical Reviews
Publisher: American Chemical Society (ACS)
Published: 2010-06-28
Volume: 110
Issue: 8
Pages: 4709-4723
ISSN: 0009-2665 (ISSN-L)
1520-6890
DOI: 10.1021/cr900323b
OpenAlex: W1965800165
Cited by: 298
References: 120
FWCI: 1.60
Type: journal article
Language: en
Open access: green

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Binary Probes for Nucleic Acid Analysis

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