Neurobiology: Memory and molecular turnover

The molecular basis of CaMKII function in synaptic and behavioural memory

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Covalent Modification of DNA Regulates Memory Formation

Miller, C. A., & Sweatt, J. D. (2007) · Neuron · doi:10.1016/j.neuron.2007.02.022 · Cited by 1,180 · see citing works

A thousand and one protein kinases

Hunter, T. R. (1987) · Cell · doi:10.1016/0092-8674(87)90509-5 · Cited by 1,057 · see citing works

The long and the short of long–term memory—a molecular framework

Goelet, P., Castellucci, V. F., Schacher, S., & Kandel, E. R. (1986) · Nature · doi:10.1038/322419a0 · Cited by 1,034 · see citing works

Regulation of brain Type II Ca2+/calmodulin-dependent protein kinase by autophosphorylation: A Ca2+-triggered molecular switch

Miller, S. (1986) · Cell · doi:10.1016/0092-8674(86)90008-5 · Cited by 864 · see citing works

Structural Changes Accompanying Memory Storage

Bailey, C. H., & Kandel, E. R. (1993) · Annual Review of Physiology · doi:10.1146/annurev.ph.55.030193.002145 · Cited by 856 · see citing works

Structure-stability-function relationships of dendritic spines

Kasai, H., Matsuzaki, M., Noguchi, J., Yasumatsu, N., & Nakahara, H. (2003) · Trends in Neurosciences · doi:10.1016/s0166-2236(03)00162-0 · Cited by 847 · see citing works

Learning and memory in the honeybee

Hammer, M., & Menzel, R. (1995) · Journal of Neuroscience · doi:10.1523/jneurosci.15-03-01617.1995 · Cited by 726 · see citing works

Histone acetylation: molecular mnemonics on the chromatin

Gräff, J., & Tsai, L.-H. (2013) · Nature Reviews Neuroscience · doi:10.1038/nrn3427 · Cited by 680 · see citing works

A Role for Neuronal piRNAs in the Epigenetic Control of Memory-Related Synaptic Plasticity

Rajasethupathy, P., Antonov, I., Sheridan, R., Frey, S., Sander, C., Tuschl, T., & Kandel, E. R. (2012) · Cell · doi:10.1016/j.cell.2012.02.057 · Cited by 566 · see citing works

Cortical DNA methylation maintains remote memory

Miller, C. A., Gavin, C. F., White, J. A., Parrish, R. R., Honasoge, A., Yancey, C. R., Rivera, I. M., Rubio, M. D., Rumbaugh, G., & Sweatt, J. D. (2010) · Nature Neuroscience · doi:10.1038/nn.2560 · Cited by 520 · see citing works

DNA methylation and memory formation

Day, J. J., & Sweatt, J. D. (2010) · Nature Neuroscience · doi:10.1038/nn.2666 · Cited by 488 · see citing works

A mechanism for memory storage insensitive to molecular turnover: a bistable autophosphorylating kinase.

Lisman, J. E. (1985) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.82.9.3055 · Cited by 475 · see citing works

How does PKMζ maintain long-term memory?

Sacktor, T. C. (2011) · Nature Reviews Neuroscience · doi:10.1038/nrn2949 · Cited by 431 · see citing works

Long-Term Synaptic Potentiation

Brown, T. H., Chapman, P. F., Kairiss, E. W., & Keenan, C. L. (1988) · Science · doi:10.1126/science.2903551 · Cited by 415 · see citing works

Epigenetic regulation of gene expression in physiological and pathological brain processes

Gräff, J., Kim, D., Dobbin, M. M., & Tsai, L.-H. (2011) · Physiological Reviews · doi:10.1152/physrev.00012.2010 · Cited by 373 · see citing works

Diverse synaptic plasticity mechanisms orchestrated to form and retrieve memories in spiking neural networks

Zenke, F., Agnes, E. J., & Gerstner, W. (2015) · Nature Communications · doi:10.1038/ncomms7922 · Cited by 374 · see citing works

Is plasticity of synapses the mechanism of long-term memory storage?

Abraham, W. C., Jones, O. D., & Glanzman, D. L. (2019) · npj Science of Learning · doi:10.1038/s41539-019-0048-y · Cited by 368 · see citing works

Epigenetic regulation of memory formation and maintenancePreprint

Zovkic, I. B., Karlsson, M. G., & Sweatt, J. D. (2013) · Learning & Memory · doi:10.1101/lm.026575.112 · Cited by 362 · see citing works

Rapid Erasure of Long-Term Memory Associations in the Cortex by an Inhibitor of PKMζ

Shema, R., Sacktor, T. C., & Dudai, Y. (2007) · Science · doi:10.1126/science.1144334 · Cited by 353 · see citing works

Stable hippocampal long-term potentiation elicited by ‘theta’ pattern stimulation

Staubli, U. V., & LYNCH, G. S. (1987) · Brain Research · doi:10.1016/0006-8993(87)91605-2 · Cited by 345 · see citing works

Neural plasticity and behavior – sixty years of conceptual advances

Sweatt, J. D. (2016) · Journal of Neurochemistry · doi:10.1111/jnc.13580 · Cited by 341 · see citing works

Long-term potentiation and long-term depression: a clinical perspective

Bliss, T. V. P., & Cooke, S. F. (2011) · Clinics · doi:10.1590/s1807-59322011001300002 · Cited by 333 · see citing works

Post‐translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding

Prabakaran, S., Lippens, G., Steen, H., & Gunawardena, J. (2012) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.1185 · Cited by 335 · see citing works

Eligibility Traces and Plasticity on Behavioral Time Scales: Experimental Support of NeoHebbian Three-Factor Learning Rules

Gerstner, W., Lehmann, M., Liakoni, V., Corneil, D., & Brea, J. (2018) · Frontiers in Neural Circuits · doi:10.3389/fncir.2018.00053 · Cited by 321 · see citing works

The Emerging Field of Neuroepigenetics

Sweatt, J. D. (2013) · Neuron · doi:10.1016/j.neuron.2013.10.023 · Cited by 324 · see citing works

Epigenetic codes in cognition and behaviour

Gräff, J., & Mansuy, I. M. (2008) · Behavioural Brain Research · doi:10.1016/j.bbr.2008.01.021 · Cited by 307 · see citing works

The Potential of HDAC Inhibitors as Cognitive Enhancers

Gräff, J., & Tsai, L. (2013) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev-pharmtox-011112-140216 · Cited by 297 · see citing works

Expression of a multifunctional Ca2+/calmodulin-dependent protein kinase and mutational analysis of its autoregulation

Hanson, P. I., Kapiloff, M. S., Lou, L. L., Rosenfeld, M. G., & Schulman, H. (1989) · Neuron · doi:10.1016/0896-6273(89)90115-3 · Cited by 290 · see citing works

Critical Role of Amyloid-like Oligomers of Drosophila Orb2 in the Persistence of Memory

Majumdar, A., Cesario, W. C., White‐Grindley, E., Jiang, H., Ren, F., Khan, M. R., Li, L., Choi, E. M.-L., Kannan, K. S., Guo, F., et al. (2012) · Cell · doi:10.1016/j.cell.2012.01.004 · Cited by 275 · see citing works

The Persistence of Long-Term Memory

Bailey, C. H., Kandel, E. R., & Si, K. (2004) · Neuron · doi:10.1016/j.neuron.2004.09.017 · Cited by 277 · see citing works

Neuronal activity modifies the chromatin accessibility landscape in the adult brain

Su, Y., Shin, J., Zhong, C., Wang, S. Z., Roychowdhury, P., Lim, J., Kim, D. S., Ming, G., & Song, H. (2017) · Nature Neuroscience · doi:10.1038/nn.4494 · Cited by 234 · see citing works

Computational principles of synaptic memory consolidation

Benna, M. K., & Fusi, S. (2016) · Nature Neuroscience · doi:10.1038/nn.4401 · Cited by 240 · see citing works

The roles of protein kinases in learning and memoryPreprint

Giese, K.-P., & Mizuno, K. (2013) · Learning & Memory · doi:10.1101/lm.028449.112 · Cited by 229 · see citing works

Glutamatergic model psychoses: prediction error, learning, and inference

Corlett, P. R., Honey, G. D., Krystal, J. H., & Fletcher, P. C. (2011) · Neuropsychopharmacology · doi:10.1038/npp.2010.163 · Cited by 229 · see citing works

Neuronal models of cognitive functions

Changeux, J., & Dehaene, S. (1989) · Cognition · doi:10.1016/0010-0277(89)90006-1 · Cited by 218 · see citing works

Common molecular mechanisms in explicit and implicit memory

Barco, Á., Bailey, C. H., & Kandel, E. R. (2006) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2006.03870.x · Cited by 217 · see citing works

Molecular Mechanisms of the Memory Trace

Asok, A., Leroy, F., Rayman, J. B., & Kandel, E. R. (2018) · Trends in Neurosciences · doi:10.1016/j.tins.2018.10.005 · Cited by 213 · see citing works

Computational principles of memory

Chaudhuri, R., & Fiete, I. (2016) · Nature Neuroscience · doi:10.1038/nn.4237 · Cited by 213 · see citing works

Chapter 2 PKMζ, LTP maintenance, and the dynamic molecular biology of memory storage

Sacktor, T. C. (2008) · Progress in Brain Research · doi:10.1016/s0079-6123(07)00002-7 · Cited by 208 · see citing works

The Dynamics of Free Calcium in Dendritic Spines in Response to Repetitive Synaptic Input

Gamble, E. B., & Koch, C. (1987) · Science · doi:10.1126/science.3495885 · Cited by 200 · see citing works

The Stability of a Stochastic CaMKII Switch: Dependence on the Number of Enzyme Molecules and Protein Turnover

Miller, P., Zhabotinsky, A. M., Lisman, J. E., & Wang, X.-J. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030107 · Cited by 199 · see citing works

Cryo-EM structure of a neuronal functional amyloid implicated in memory persistence in Drosophila

Hervás, R., Rau, M., Park, Y., Zhang, W., Murzin, A. G., Fitzpatrick, J. A. J., Scheres, S. H. W., & Si, K. (2020) · Science · doi:10.1126/science.aba3526 · Cited by 189 · see citing works

The postsynaptic density: a possible role in long-lasting effects in the central nervous system.

Siekevitz, P. (1985) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.82.10.3494 · Cited by 197 · see citing works

REM sleep and neural nets

Crick, F., & Mitchison, G. (1995) · Behavioural Brain Research · doi:10.1016/0166-4328(95)00006-f · Cited by 195 · see citing works

Epigenetic Mechanisms in Learned Fear: Implications for PTSD

Zovkic, I. B., & Sweatt, J. D. (2012) · Neuropsychopharmacology · doi:10.1038/npp.2012.79 · Cited by 186 · see citing works

Feasibility of long-term storage of graded information by the Ca2+/calmodulin-dependent protein kinase molecules of the postsynaptic density.

Lisman, J. E., & Goldring, M. A. (1988) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.85.14.5320 · Cited by 257 · see citing works

Inhibitors of protein and RNA synthesis block structural changes that accompany long-term heterosynaptic plasticity in Aplysia

Bailey, C. H., Montarolo, P. G., Chen, M., Kandel, E. R., & Schacher, S. (1992) · Neuron · doi:10.1016/0896-6273(92)90037-e · Cited by 177 · see citing works

Identification of Combinatorial Patterns of Post-Translational Modifications on Individual Histones in the Mouse Brain

Tweedie‐Cullen, R. Y., Brunner, A. M., Grossmann, J., Mohanna, S., Sichau, D., Nanni, P., Panse, C., & Mansuy, I. M. (2012) · PLoS ONE · doi:10.1371/journal.pone.0036980 · Cited by 162 · see citing works

CaMKII "Autonomy" Is Required for Initiating But Not for Maintaining Neuronal Long-Term Information Storage

Buard, I., Coultrap, S. J., Freund, R. K., Lee, Y.-S., Dell'Acqua, M. L., Silva, A. J., & Bayer, K. U. (2010) · Journal of Neuroscience · doi:10.1523/jneurosci.1469-10.2010 · Cited by 160 · see citing works

Activation of the multifunctional Ca2+/calmodulin-dependent protein kinase by autophosphorylation: ATP modulates production of an autonomous enzyme.

Lou, L. L., Lloyd, S. J., & Schulman, H. (1986) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.83.24.9497 · Cited by 206 · see citing works

Tag-Trigger-Consolidation: A Model of Early and Late Long-Term-Potentiation and Depression

Claudia Clopath, A., Ziegler, L., Vasilaki, E., Buesing, L., & Gerstner, W. (2008) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000248 · Cited by 152 · see citing works

Why do delusions persist?

Corlett, P. R. (2009) · Frontiers in Human Neuroscience · doi:10.3389/neuro.09.012.2009 · Cited by 146 · see citing works

Stress and Anxiety Across the Lifespan: Structural Plasticity and Epigenetic Regulation

Hunter, R. G., & McEwen, B. S. (2013) · Epigenomics · doi:10.2217/epi.13.8 · Cited by 141 · see citing works

Ubiquitin-proteasome-mediated local protein degradation and synaptic plasticity

Hegde, A. N. (2004) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2004.05.005 · Cited by 141 · see citing works

Distinct autophosphorylation sites sequentially produce autonomy and inhibition of the multifunctional Ca2+/calmodulin-dependent protein kinase

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Multifunctional Ca2+/calmodulin-dependent protein kinase

Schulman, H., & Hanson, P. I. (1993) · Neurochemical Research · doi:10.1007/bf00966924 · Cited by 134 · see citing works

Mechanisms of induction and maintenance of spike-timing dependent plasticity in biophysical synapse models

Graupner, M. (2010) · Frontiers in Computational Neuroscience · doi:10.3389/fncom.2010.00136 · Cited by 128 · see citing works

Activity-dependent regulation of gene expression in muscle and neuronal cells

Laufer, R., & Changeux, J. (1989) · Molecular Neurobiology · doi:10.1007/bf02935587 · Cited by 131 · see citing works

Cognitive neuroepigenetics: A role for epigenetic mechanisms in learning and memory

Day, J. J., & Sweatt, J. D. (2010) · Neurobiology of Learning and Memory · doi:10.1016/j.nlm.2010.12.008 · Cited by 130 · see citing works

Epigenetic Treatments for Cognitive Impairments

Day, J. J., & Sweatt, J. D. (2011) · Neuropsychopharmacology · doi:10.1038/npp.2011.85 · Cited by 127 · see citing works

Amyloidogenic Oligomerization Transforms Drosophila Orb2 from a Translation Repressor to an Activator

Khan, M. R., Li, L., Pérez-Sánchez, C., Saraf, A., Florens, L. A., Slaughter, B. D., Unruh, J. R., & Si, K. (2015) · Cell · doi:10.1016/j.cell.2015.11.020 · Cited by 129 · see citing works

Synaptic memory and CaMKII

Nicoll, R. A., & Schulman, H. (2023) · Physiological Reviews · doi:10.1152/physrev.00034.2022 · Cited by 126 · see citing works

Reconsidering the evidence for learning in single cells

Gershman, S. J., Balbi, P. E., Gallistel, C. R., & Gunawardena, J. (2021) · eLife · doi:10.7554/elife.61907 · Cited by 125 · see citing works

Long-term sensitization in Aplysia increases the number of presynaptic contacts onto the identified gill motor neuron L7.

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Epigenetic Mechanisms in Memory and Cognitive Decline Associated with Aging and Alzheimer’s Disease

Maity, S., Farrell, K., Navabpour, S., Narayanan, S. N., & Jarome, T. J. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222212280 · Cited by 123 · see citing works

A biochemist's view of long-term potentiation.Preprint

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Long-term potentiation: studies in the hippocampal slice

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A brain atlas of synapse protein lifetime across the mouse lifespan

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Activation-triggered subunit exchange between CaMKII holoenzymes facilitates the spread of kinase activity

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Molecular mechanism of activation-triggered subunit exchange in Ca2+/calmodulin-dependent protein kinase II

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DNA methylation regulates neuronal glutamatergic synaptic scaling

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Protein kinase C activation leading to protein F1 phosphorylation may regulate synaptic plasticity by presynaptic terminal growth

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Is there an Epigenetic Component in Long-term Memory?

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The Role of Functional Prion-Like Proteins in the Persistence of MemoryPreprint

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Molecular Basis of Orb2 Amyloidogenesis and Blockade of Memory Consolidation

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Role of DNA methylation and the DNA methyltransferases in learning and memory

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Understanding the physical basis of memory: Molecular mechanisms of the engram

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Activation and regulation of protein Kinase C enzymes

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Anxiety and Epigenetics

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Neuronal DNA Methyltransferases: Epigenetic Mediators between Synaptic Activity and Gene Expression?

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DNA methylation-mediated control of learning and memory

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Excitation–transcription coupling, neuronal gene expression and synaptic plasticity

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Cognitive kinases.

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Cellular and network properties in the functioning of the nervous system: from central pattern generators to cognition

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Boundary conditions for the maintenance of memory by PKMζ in neocortexPreprint

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Autophosphorylation of αCaMKII is not a general requirement for NMDA receptor‐dependent LTP in the adult mouse

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Sleep memory processing: the sequential hypothesis

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“The seven sins” of the Hebbian synapse: Can the hypothesis of synaptic plasticity explain long-term memory consolidation?

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Learning and memory: Steroids and epigenetics

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A quantitative analysis of 2-D gels identifies proteins in which labeling is increased following long-term sensitization in Aplysia

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DNA Methylation in Memory Formation

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What We Can Learn from Invertebrate Learning

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Philosophical Challenges for Researchers at the Interface between Neuroscience and Education

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Locating the engram: Should we look for plastic synapses or information-storing molecules?

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Learning of Signaling Networks: Molecular Mechanisms

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Dynamic and selective engrams emerge with memory consolidation

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Memory Takes Time

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DNA-Methylation: Master or Slave of Neural Fate Decisions?

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A Biochemical Blueprint for Long-Term MemoryPreprint

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On the difference between Seyfert galaxies of 1 and 2 types

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Two Types of Radio Galaxies: A New ApproachPreprint

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Type Transitions in Starburst-Powered AGN

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An evolutionary link between Seyfert I and II galaxies?

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Seyfert galaxies and "Unified Scheme"

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