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The genome of Theobroma cacao

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Argout, Xavier, Salse, Jerome, Aury, Jean-Marc, Guiltinan, Mark J, Droc, Gaetan, Gouzy, Jerome, Allegre, Mathilde, Chaparro, Cristian, Legavre, Thierry, Maximova, Siela N, Abrouk, Michael, Murat, Florent, Fouet, Olivier, Poulain, Julie, Ruiz, Manuel, Roguet, Yolande, Rodier-Goud, Maguy, Barbosa-Neto, Jose Fernandes, Sabot, Francois, Kudrna, Dave, Ammiraju, Jetty Siva S, Schuster, Stephan C, Carlson, John E, Sallet, Erika, Schiex, Thomas, Dievart, Anne, Kramer, Melissa, Gelley, Laura, Shi, Zi, Bérard, Aurélie, Viot, Christopher, Boccara, Michel, Risterucci, Ange Marie, Guignon, Valentin, Sabau, Xavier, Axtell, Michael J, Ma, Zhaorong, Zhang, Yufan, Brown, Spencer, Bourge, Mickael, Golser, Wolfgang, Song, Xiang, Clement, Didier, Rivallan, Ronan, Tahi, Mathias, Akaza, Joseph Moroh, Pitollat, Bertrand, Gramacho, Karina, D'Hont, Angélique, Brunel, Dominique, Infante, Diogenes, Kebe, Ismael, Costet, Pierre, Wing, Rod, McCombie, W Richard, Guiderdoni, Emmanuel, Quetier, Francis, Panaud, Olivier, Wincker, Patrick, Bocs, Stephanie, Lanaud, Claire·2011·Nature Genetics

DOI 10.1038/ng.736

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Abstract

Xavier Argout and colleagues report the draft genome of Theobroma cacao, the tropical crop that is the source of chocolate. The sequence assembly covers approximately 80% of the genome. We sequenced and assembled the draft genome of Theobroma cacao, an economically important tropical-fruit tree crop that is the source of chocolate. This assembly corresponds to 76% of the estimated genome size and contains almost all previously described genes, with 82% of these genes anchored on the 10 T. cacao chromosomes. Analysis of this sequence information highlighted specific expansion of some gene families during evolution, for example, flavonoid-related genes. It also provides a major source of candidate genes for T. cacao improvement. Based on the inferred paleohistory of the T. cacao genome, we propose an evolutionary scenario whereby the ten T. cacao chromosomes were shaped from an ancestor through eleven chromosome fusions.

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See all 746

Authors: Argout, X., Salse, J., Aury, J.-M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., Abrouk, M., Murat, F., Fouet, O., Poulain, J., Ruiz, M., Roguet, Y., Rodier-Goud, M., Barbosa-Neto, J. F., Sabot, F., Kudrna, D., Ammiraju, J. S. S., Schuster, S. C., Carlson, J. E., Sallet, E., Schiex, T., Dievart, A., Kramer, M., Gelley, L., Shi, Z., Bérard, A., Viot, C., Boccara, M., Risterucci, A. M., Guignon, V., Sabau, X., Axtell, M. J., Ma, Z., Zhang, Y., Brown, S., Bourge, M., Golser, W., Song, X., Clement, D., Rivallan, R., Tahi, M., Akaza, J. M., Pitollat, B., Gramacho, K., D'Hont, A., Brunel, D., Infante, D., Kebe, I., Costet, P., Wing, R., McCombie, W. R., Guiderdoni, E., Quetier, F., Panaud, O., Wincker, P., Bocs, S., & Lanaud, C.
Venue: Nature Genetics
Publisher: Springer Science and Business Media LLC
Published: 2010-12-26
Volume: 43
Issue: 2
Pages: 101-108
ISSN: 1061-4036 (ISSN-L)
1546-1718
DOI: 10.1038/ng.736
OpenAlex: W2092779913
Cited by: 746
References: 109
FWCI: 52.02
Type: journal article
Language: en
Open access: hybrid

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The genome of Theobroma cacao

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