Arabidopsis JAGGED LATERAL ORGANS Is Expressed in Boundaries and Coordinates KNOX and PIN Activity
Open accessAbstract
Plant lateral organs are initiated as small protrusions on the flanks of shoot apical meristems. Organ primordia are separated from the remainder of the meristem by distinct cell types that create a morphological boundary. The Arabidopsis thaliana gain-of-function mutant jagged lateral organs-D (jlo-D) develops strongly lobed leaves, indicative of KNOX gene misexpression, and the shoot apical meristem arrests organ initiation prematurely, terminating in a pin-like structure. The JLO gene, a member of the LATERAL ORGAN BOUNDARY DOMAIN gene family, is expressed in boundaries between meristems and organ primordia and during embryogenesis. Inducible JLO misexpression activates expression of the KNOX genes SHOOT MERISTEMLESS and KNAT1 in leaves and downregulates the expression of PIN auxin export facilitators. Consequently, bulk auxin transport through the inflorescence stem is drastically reduced. During embryogenesis, JLO is required for the initiation of cotyledons and development beyond the globular stage. Converting JLO into a transcriptional repressor causes organ fusions, showing that during postembryonic development, JLO function is required to maintain the integrity of boundaries between cell groups with indeterminate or determinate fates.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
JLO is expressed at the boundary between the SAM and organ primordia.
“JLO is expressed at the boundary between the SAM and organ primordia (Borghi et al., 2007;Bureau et al., 2010;Rast & Simon, 2012)”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Borghi et al., 2007
JLO is a modulator of boundary establishment in Arabidopsis.
“JAGGED LATERAL ORGANS (JLO) has been identified as a modulator of boundary establishment in Arabidopsis (Borghi et al., 2007).”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Borghi et al., 2007
JLO is expressed in the boundary between the SAM and organ primordia.
“| JLO | Unknown | LBD | Fusion of cotyledons and | SAM and organ primordia | Borghi et al. (2007); Bureau et al. |”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Borghi et al. (2007)
The Arabidopsis JLO gene encodes an LBD protein family protein.
“| JLO | Unknown | LBD | Fusion of cotyledons and | SAM and organ primordia | Borghi et al. (2007); Bureau et al. |”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Borghi et al. (2007)
Loss-of-function mutants of JLO show fusion of cotyledons and floral organs.
“| JLO | Unknown | LBD | Fusion of cotyledons and | SAM and organ primordia | Borghi et al. (2007); Bureau et al. |”
From <i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems (2016) · cites this paper as Borghi et al. (2007)
Cites
The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots
Blilou, I., Xu, J., Wildwater, M., Willemsen, V., Paponov, I. A., Friml, J., Heidstra, R., Aida, M., Palme, K. J., & Scheres, B. (2005) · Nature · doi:10.1038/nature03184 · Cited by 2,023 · see citing works
Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis
Friml, J., Vieten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T., Offringa, R., & Jürgens, G. (2003) · Nature · doi:10.1038/nature02085 · Cited by 1,896 · see citing works
A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis
Long, J. A., Moan, E. I., Medford, J. I., & Barton, M. K. (1996) · Nature · doi:10.1038/379066a0 · Cited by 1,537 · see citing works
Regulation of phyllotaxis by polar auxin transport
Reinhardt, D., Pesce, E.-R., Stieger, P., Mandel, T., Baltensperger, K., Bennett, M., Traas, J., Friml, J., & Kuhlemeier, C. (2003) · Nature · doi:10.1038/nature02081 · Cited by 1,523 · see citing works
Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.
Aida, M., Ishida, T., Fukaki, H., Fujisawa, H., & Tasaka, M. (1997) · The Plant Cell · doi:10.1105/tpc.9.6.841 · Cited by 1,486 · see citing works
Heisler, M. G., Ohno, C., Das, P., Sieber, P., Reddy, G. V., Long, J. A., & Meyerowitz, E. M. (2005) · Current Biology · doi:10.1016/j.cub.2005.09.052 · Cited by 1,189 · see citing works
Dependence of Stem Cell Fate in Arabidopsis on a Feedback Loop Regulated by CLV3 Activity
Brand, U., Fletcher, J. C., Hobe, M., Meyerowitz, E. M., & Simon, R. G. (2000) · Science · doi:10.1126/science.289.5479.617 · Cited by 1,123 · see citing works
Self-citationAuxin Regulates the Initiation and Radial Position of Plant Lateral Organs
Reinhardt, D., Mandel, T., & Kuhlemeier, C. (2000) · The Plant Cell · doi:10.1105/tpc.12.4.507 · Cited by 1,024 · see citing works
Bechtold, N., & Pelletier, G. (1998) · Humana Press eBooks · doi:10.1385/0-89603-391-0:259 · Cited by 1,022 · see citing works
Requirement of the Auxin Polar Transport System in Early Stages of Arabidopsis Floral Bud Formation.
Okada, K., Ueda, J., Komaki, M., Bell, C. J., & Shimura, Y. (1991) · The Plant Cell · doi:10.1105/tpc.3.7.677 · Cited by 1,017 · see citing works
AtPIN2 defines a locus of Arabidopsis for root gravitropism control
Müller, A., Guan, C., Gälweiler, L., Tänzler, P., Huijser, P., Marchant, A., Parry, G., Bennett, M. J., Wisman, E., & Palme, K. J. (1998) · The EMBO Journal · doi:10.1093/emboj/17.23.6903 · Cited by 900 · see citing works
Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis
Byrne, M. E., Barley, R., Curtis, M. D., Arroyo, J. M., Dunham, M. J., Hudson, A., & Martienssen, R. A. (2000) · Nature · doi:10.1038/35050091 · Cited by 816 · see citing works
Hiratsu, K., Matsui, K., Koyama, T., & Ohme‐Takagi, M. (2003) · The Plant Journal · doi:10.1046/j.1365-313x.2003.01759.x · Cited by 816 · see citing works
Control of leaf vascular patterning by polar auxin transport
Scarpella, E., Marcos, D., Friml, J., & Berleth, T. (2006) · Genes & Development · doi:10.1101/gad.1402406 · Cited by 799 · see citing works
Auxin inhibits endocytosis and promotes its own efflux from cells
Paciorek, T., Zažímalová, E., Ruthardt, N., Petrášek, J., Stierhof, Y.-D., Kleine-Vehn, J., Morris, D. A., Emans, N., Jürgens, G., Geldner, N., et al. (2005) · Nature · doi:10.1038/nature03633 · Cited by 772 · see citing works
Clark, S. E., Running, M., & Meyerowitz, E. M. (1995) · Development · doi:10.1242/dev.121.7.2057 · Cited by 735 · see citing works
Functional Analysis of Cyclin-Dependent Kinase Inhibitors of Arabidopsis
Veylder, L. D., Beeckman, T., Beemster, G. T. S., Krols, L., Terras, F. R. G., Landrieu, I., Schueren, E. V. D., Maes, S., Naudts, M., & Inzé, D. (2001) · The Plant Cell · doi:10.1105/tpc.010087 · Cited by 640 · see citing works
Vieten, A., Vanneste, S., Wiśniewska, J., Benková, E., Benjamins, R., Beeckman, T., Luschnig, C., & Friml, J. (2005) · Development · doi:10.1242/dev.02027 · Cited by 636 · see citing works
Takada, S., Hibara, K.-I., Ishida, T., & Tasaka, M. (2001) · Development · doi:10.1242/dev.128.7.1127 · Cited by 587 · see citing works
Aida, M., Ishida, T., & Tasaka, M. (1999) · Development · doi:10.1242/dev.126.8.1563 · Cited by 557 · see citing works
The <i>Lateral Organ Boundaries</i> Gene Defines a Novel, Plant-Specific Gene Family
Shuai, B., Reynaga-Peña, C. G., & Springer, P. S. (2002) · Plant Physiology · doi:10.1104/pp.010926 · Cited by 555 · see citing works
Requirement of the Auxin Polar Transport System in Early Stages of Arabidopsis Floral Bud Formation
Okada, K., Ueda, J., Komaki, M., Bell, C. J., & Shimura, Y. (1991) · The Plant Cell · doi:10.2307/3869249 · Cited by 542 · see citing works
The Arabidopsis MAX Pathway Controls Shoot Branching by Regulating Auxin Transport
Bennett, T., Sieberer, T., Willett, B., Booker, J., Luschnig, C., & Leyser, O. (2006) · Current Biology · doi:10.1016/j.cub.2006.01.058 · Cited by 488 · see citing works
Vroemen, C. W., Mordhorst, A. P., Albrecht, C., Kwaaitaal, M. A. C. J., & de Vries, S. C. (2003) · The Plant Cell · doi:10.1105/tpc.012203 · Cited by 480 · see citing works
Responses of plant vascular systems to auxin transport inhibition
Mattsson, J., Sung, Z. R., & Berleth, T. (1999) · Development · doi:10.1242/dev.126.13.2979 · Cited by 471 · see citing works
Semiarti, E., Ueno, Y., Tsukaya, H., Iwakawa, H., Machida, C., & Machida, Y. (2001) · Development · doi:10.1242/dev.128.10.1771 · Cited by 470 · see citing works
Mechanisms that control knox gene expression in the Arabidopsis shoot
Ori, N., Eshed, Y., Chuck, G. S., Bowman, J. L., & Hake, S. (2000) · Development · doi:10.1242/dev.127.24.5523 · Cited by 455 · see citing works
Dewitte, W., Riou, C., Scofield, S., Healy, J. M. S., Jacqmard, A., Kilby, N. J., & Murray, J. A. H. (2002) · The Plant Cell · doi:10.1105/tpc.004838 · Cited by 433 · see citing works
ARL1, a LOB‐domain protein required for adventitious root formation in rice
Liu, H., Wang, S., Yu, X., Yu, J., He, X., Zhang, S., Shou, H., & Wu, P. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02434.x · Cited by 422 · see citing works
ASYMMETRIC LEAVES1revealsknoxgene redundancy inArabidopsis
Byrne, M. E., Simorowski, J., & Martienssen, R. A. (2002) · Development · doi:10.1242/dev.129.8.1957 · Cited by 407 · see citing works
Auxin Triggers Transient Local Signaling for Cell Specification in Arabidopsis Embryogenesis
Weijers, D., Schlereth, A., Ehrismann, J. S., Schwank, G., Kientz, M., & Jürgens, G. (2006) · Developmental Cell · doi:10.1016/j.devcel.2005.12.001 · Cited by 347 · see citing works
Lin, W.-C. (2003) · The Plant Cell · doi:10.1105/tpc.014969 · Cited by 316 · see citing works
PIN-FORMED 1 regulates cell fate at the periphery of the shoot apical meristem
Vernoux, T., Kronenberger, J., Grandjean, O., Laufs, P., & Traas, J. A. (2000) · Development · doi:10.1242/dev.127.23.5157 · Cited by 294 · see citing works
Furutani, M., Vernoux, T., Traas, J., Kato, T., Tasaka, M., & Aida, M. (2004) · Development · doi:10.1242/dev.01388 · Cited by 271 · see citing works
Regulation of CLV3 Expression by Two Homeobox Genes in Arabidopsis
Brand, U., Grünewald, M., Hobe, M., & Simon, R. G. (2002) · PLANT PHYSIOLOGY · doi:10.1104/pp.001867 · Cited by 266 · see citing works
Self-citationPhelps-Durr, T., Thomas, J., Vahab, P., & Timmermans, M. C. P. (2005) · The Plant Cell · doi:10.1105/tpc.105.035477 · Cited by 206 · see citing works
Regulation of Ovule Development
Skinner, D. J. (2004) · The Plant Cell · doi:10.1105/tpc.015933 · Cited by 186 · see citing works
Kirch, T., Simon, R. G., Grünewald, M., & Werr, W. (2003) · The Plant Cell · doi:10.1105/tpc.009480 · Cited by 176 · see citing works
Self-citationDynamic and Compensatory Responses of Arabidopsis Shoot and Floral Meristems to CLV3 Signaling
Müller-Xing, R., Borghi, L., Kwiatkowska, D., Laufs, P., & Simon, R. G. (2006) · The Plant Cell · doi:10.1105/tpc.105.040444 · Cited by 174 · see citing works
Self-citationScanlon, M. J. (2003) · PLANT PHYSIOLOGY · doi:10.1104/pp.103.026880 · Cited by 155 · see citing works
Schnittger, A., Schöbinger, U., Bouyer, D., Weinl, C., Stierhof, Y., & Hülskamp, M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.092657299 · Cited by 154 · see citing works
Weijers, D., Sauer, M., Meurette, O., Friml, J., Ljung, K., Sandberg, G., Hooykaas, P. J. J., & Offringa, R. (2005) · The Plant Cell · doi:10.1105/tpc.105.034637 · Cited by 153 · see citing works
High‐resolution boundary analysis during <i>Arabidopsis thaliana</i> flower development
Breuil‐Broyer, S., Morel, P., De Almeida‐Engler, J., Coustham, V., Negrutiu, I., & Trehin, C. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2004.02026.x · Cited by 128 · see citing works
Chalfun-Júnior, A., Franken, J., Mes, J. J., Marsch‐Martínez, N., Pereira, A., & Angenent, G. C. (2005) · Plant Molecular Biology · doi:10.1007/s11103-005-0698-4 · Cited by 115 · see citing works
Morphogenesis and Patterning at the Organ Boundaries in the Higher Plant Shoot Apex
Aida, M., & Tasaka, M. (2006) · Plant Molecular Biology · doi:10.1007/s11103-005-2760-7 · Cited by 113 · see citing works
Disruption of Auxin Transport Is Associated with Aberrant Leaf Development in Maize
Tsiantis, M., Brown, M. I. N., Skibinski, G., & Langdale, J. A. (1999) · PLANT PHYSIOLOGY · doi:10.1104/pp.121.4.1163 · Cited by 110 · see citing works
Plant hormones and homeoboxes: bridging the gap?
Hay, A., Craft, J., & Tsiantis, M. (2004) · BioEssays · doi:10.1002/bies.20016 · Cited by 106 · see citing works
Scanlon, M. J., Henderson, D. C., & Bernstein, B. (2002) · Development · doi:10.1242/dev.129.11.2663 · Cited by 78 · see citing works
Surface growth at the reproductive shoot apex of Arabidopsis thaliana pin-formed 1 and wild type
Kwiatkowska, D. (2004) · Journal of Experimental Botany · doi:10.1093/jxb/erh109 · Cited by 69 · see citing works
A Simple and Efficient Method for Isolating Trichomes for Downstream Analyses
Zhang, X., & Oppenheimer, D. G. (2004) · Plant and Cell Physiology · doi:10.1093/pcp/pch016 · Cited by 63 · see citing works
Schneider, A., Kirch, T., Gigolashvili, T., Mock, H., Sonnewald, U., Simon, R. G., Flügge, U., & Werr, W. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.07.030 · Cited by 39 · see citing works
Self-citationEmbryonic shoot apical meristem formation in higher plants
Takada, S., & Tasaka, M. (2002) · Journal of Plant Research · doi:10.1007/s10265-002-0061-7 · Cited by 32 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Rubin, G., Tohge, T., Matsuda, F., Saito, K., & Scheible, W. (2009) · The Plant Cell · doi:10.1105/tpc.109.067041 · Cited by 653 · see citing works
KNOX genes: versatile regulators of plant development and diversity
Hay, A., & Tsiantis, M. (2010) · Development · doi:10.1242/dev.030049 · Cited by 591 · see citing works
Lee, H. W., Kim, N. Y., Lee, D. J., & Kim, J. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.143685 · Cited by 336 · see citing works
Twenty years on: The inner workings of the shoot apical meristem, a developmental dynamo
Barton, M. K. (2010) · Developmental Biology · doi:10.1016/j.ydbio.2009.11.029 · Cited by 372 · see citing works
Alvarez-Buylla, E. R., Benítez, M., Corvera-Poiré, A., Chaos, Á., de Folter, S., Buen, A. G.-D., Garay‐Arroyo, A., García‐Ponce, B., Jaimes‐Miranda, F., Pérez-Ruíz, R. V., et al. (2010) · The Arabidopsis Book · doi:10.1199/tab.0127 · Cited by 313 · see citing works
Defining the boundaries: structure and function of LOB domain proteins
Majer, C., & Hochholdinger, F. (2010) · Trends in Plant Science · doi:10.1016/j.tplants.2010.09.009 · Cited by 273 · see citing works
Husbands, A. Y., Bell, E. M., Shuai, B., Smith, H. M. S., & Springer, P. S. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm775 · Cited by 270 · see citing works
Berckmans, B., Vassileva, V., Schmid, S. P. C., Maes, S., Parizot, B., Naramoto, S., Magyar, Z., Kamei, C. L. A., Koncz, C., Bögre, L., et al. (2011) · The Plant Cell · doi:10.1105/tpc.111.088377 · Cited by 239 · see citing works
Self-citationTabata, R., Ikezaki, M., Fujibe, T., Aida, M., Tian, C.-E., Ueno, Y., Yamamoto, K. T., Machida, Y., Nakamura, K., & Ishiguro, S. (2009) · Plant and Cell Physiology · doi:10.1093/pcp/pcp176 · Cited by 238 · see citing works
Identifying essential genes in Arabidopsis thaliana
Meinke, D. W., Muralla, R., Sweeney, C., & Dickerman, A. W. (2008) · Trends in Plant Science · doi:10.1016/j.tplants.2008.06.003 · Cited by 228 · see citing works
AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks
Horstman, A., Willemsen, V., Boutilier, K., & Heidstra, R. (2013) · Trends in Plant Science · doi:10.1016/j.tplants.2013.10.010 · Cited by 212 · see citing works
Genomic Analysis of Parent-of-Origin Allelic Expression in Arabidopsis thaliana Seeds
Gehring, M. A., Missirian, V., & Henikoff, S. (2011) · PLoS ONE · doi:10.1371/journal.pone.0023687 · Cited by 206 · see citing works
A Feedback Regulatory Module Formed by LITTLE ZIPPER and HD-ZIPIII Genes
Wenkel, S., Emery, J. F., Hou, B., Evans, M. M. S., & Barton, M. K. (2007) · The Plant Cell · doi:10.1105/tpc.107.055772 · Cited by 203 · see citing works
LOB Domain Proteins: Beyond Lateral Organ Boundaries
Xu, C., Luo, F., & Hochholdinger, F. (2015) · Trends in Plant Science · doi:10.1016/j.tplants.2015.10.010 · Cited by 200 · see citing works
Plant development: A TALE story
Hamant, O., & Pautot, V. (2010) · Comptes Rendus Biologies · doi:10.1016/j.crvi.2010.01.015 · Cited by 192 · see citing works
Lee, H. W., Kim, M., Kim, N. Y., Lee, S. H., & Kim, J. (2012) · The Plant Journal · doi:10.1111/tpj.12013 · Cited by 190 · see citing works
Soyano, T., Thitamadee, S., Machida, Y., & Chua, N. (2008) · The Plant Cell · doi:10.1105/tpc.108.061796 · Cited by 188 · see citing works
Bell, E. M., Lin, W.-C., Husbands, A. Y., Yu, L., Jaganatha, V., Jablonska, B., Mangeon, A., Neff, M. M., Girke, T., & Springer, P. S. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1210789109 · Cited by 194 · see citing works
The role of auxin in shaping shoot architecture
Gallavotti, A. (2013) · Journal of Experimental Botany · doi:10.1093/jxb/ert141 · Cited by 177 · see citing works
Landrein, B., Kiss, A., Sassi, M., Chauvet, A., Das, P., Cortizo, M., Laufs, P., Takeda, S., Aida, M., Traas, J., et al. (2015) · eLife · doi:10.7554/elife.07811 · Cited by 167 · see citing works
Lee, D.-K., Geisler, M., & Springer, P. S. (2009) · Development · doi:10.1242/dev.031971 · Cited by 164 · see citing works
Matsumura, Y., Iwakawa, H., Machida, Y., & Machida, C. (2009) · The Plant Journal · doi:10.1111/j.1365-313x.2009.03797.x · Cited by 159 · see citing works
Kuijt, S. J. H., Greco, R., Agalou, A., Shao, J., Hoen, C. C. J. ‘., Övernäs, E., Osnato, M., Curiale, S., Meynard, D., van Gulik, R., et al. (2014) · PLANT PHYSIOLOGY · doi:10.1104/pp.113.222836 · Cited by 158 · see citing works
Transcription factors regulating the progression of monocot and dicot seed development
Agarwal, P., Kapoor, S., & Tyagi, A. K. (2011) · BioEssays · doi:10.1002/bies.201000107 · Cited by 143 · see citing works
Yordanov, Y. S., Regan, S., & Busov, V. B. (2010) · The Plant Cell · doi:10.1105/tpc.110.078634 · Cited by 140 · see citing works
EXPANSINA17 Up-Regulated by LBD18/ASL20 Promotes Lateral Root Formation During the Auxin Response
Lee, H. W., & Kim, J. (2013) · Plant and Cell Physiology · doi:10.1093/pcp/pct105 · Cited by 137 · see citing works
Tsukaya, H. (2013) · The Arabidopsis Book · doi:10.1199/tab.0163 · Cited by 131 · see citing works
Phylogeny and Functions of LOB Domain Proteins in Plants
Zhang, Y., Li, Z., Ma, B., Hou, Q., & Wan, X. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21072278 · Cited by 133 · see citing works
Thatcher, L. F., Powell, J. J., Aitken, E. A. B., Kazan, K., & Manners, J. M. (2012) · PLANT PHYSIOLOGY · doi:10.1104/pp.112.199067 · Cited by 130 · see citing works
Shoot Apical Meristem Form and Function
Ha, C. M., Jun, J. H., & Fletcher, J. C. (2010) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/s0070-2153(10)91004-1 · Cited by 119 · see citing works
Effects of three auxin-inducible LBD members on lateral root formation in Arabidopsis thaliana
Feng, Z., Zhu, J., Du, X., & Cui, X. (2012) · Planta · doi:10.1007/s00425-012-1673-3 · Cited by 112 · see citing works
Hay, A., & Tsiantis, M. (2009) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2009.06.006 · Cited by 110 · see citing works
<i>Divide et impera</i>: boundaries shape the plant body and initiate new meristems
Wang, Q., Hasson, A., Rossmann, S., & Theres, K. (2016) · New Phytologist · doi:10.1111/nph.13641 · Cited by 106 · see citing works
Albinsky, D., Kusano, M., Higuchi, M., Hayashi, N., Kobayashi, M., Fukushima, A., Mori, M., Ichikawa, T., Matsui, K., Kuroda, H., et al. (2009) · Molecular Plant · doi:10.1093/mp/ssp069 · Cited by 106 · see citing works
The molecular and genetic regulation of shoot branching
Luo, Z., Janssen, B. J., & Snowden, K. C. (2021) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiab071 · Cited by 104 · see citing works
A diverse and intricate signalling network regulates stem cell fate in the shoot apical meristem
Dodsworth, S. (2009) · Developmental Biology · doi:10.1016/j.ydbio.2009.09.031 · Cited by 103 · see citing works
Gnan, S., Priest, A., & Kover, P. X. (2014) · Genetics · doi:10.1534/genetics.114.170746 · Cited by 104 · see citing works
Identification and Characterization of Transcription Factors Regulating Arabidopsis HAK5
Hong, J.-P., Yoshizumi, T., Kondou, Y., Schachtman, D. P., Matsui, M., & Shin, R. (2013) · Plant and Cell Physiology · doi:10.1093/pcp/pct094 · Cited by 103 · see citing works
Xu, C., Tai, H., Saleem, M., Ludwig, Y., Majer, C., Berendzen, K. W., NAGEL, K. A., Wojciechowski, T., Meeley, R. B., Taramino, G., et al. (2015) · New Phytologist · doi:10.1111/nph.13420 · Cited by 102 · see citing works
Beyond the Divide: Boundaries for Patterning and Stem Cell Regulation in Plants
Hepworth, S. R., & Pautot, V. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.01052 · Cited by 102 · see citing works
Feng, Z., Sun, X., Wang, G., Liu, H., & Zhu, J. (2012) · Annals of Botany · doi:10.1093/aob/mcs019 · Cited by 100 · see citing works
Rast, M. I., & Simon, R. (2012) · The Plant Cell · doi:10.1105/tpc.112.099978 · Cited by 89 · see citing works
Self-citationKim, M., Kim, M., Lee, M. R., Park, S. K., & Kim, J. (2015) · The Plant Journal · doi:10.1111/tpj.12767 · Cited by 89 · see citing works
The meristem-to-organ boundary: more than an extremity of anything
Rast-Somssich, M. I., & Simon, R. G. (2008) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2008.05.005 · Cited by 86 · see citing works
Self-citationOrganogenesis in plants: initiation and elaboration of leaves
Sluis, A., & Hake, S. (2015) · Trends in Genetics · doi:10.1016/j.tig.2015.04.004 · Cited by 81 · see citing works
Oh, S. A., Park, K. S., David Twell, B., & Park, S. K. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04374.x · Cited by 81 · see citing works
PETAL LOSS is a boundary gene that inhibits growth between developing sepals in Arabidopsis thaliana
Lampugnani, E. R., Kilinc, A., & Smyth, D. R. (2012) · The Plant Journal · doi:10.1111/j.1365-313x.2012.05023.x · Cited by 81 · see citing works
A Maize Gene Regulatory Network for Phenolic Metabolism
Yang, F., Li, W., Jiang, N., Yu, H., Morohashi, K., Ouma, W. Z., Morales-Mantilla, D. E., Gómez-Cano, F., Mukundi, E., Prada‐Salcedo, L. D., et al. (2016) · Molecular Plant · doi:10.1016/j.molp.2016.10.020 · Cited by 79 · see citing works
Xu, C., Cao, H., Xu, E., Zhang, S., & Hu, Y. (2017) · Plant and Cell Physiology · doi:10.1093/pcp/pcx168 · Cited by 78 · see citing works
Ferrándiz, C., Fourquin, C., Prunet, N., Scutt, C. P., Sundberg, E., Tréhin, C., & Vialette‐Guiraud, A. (2010) · Advances in botanical research · doi:10.1016/b978-0-12-380868-4.00001-6 · Cited by 75 · see citing works
Ding, L., Yan, S., Jiang, L., Zhao, W., Ning, K., Zhao, J., Liu, X., Zhang, J., Wang, Q., & Zhang, X. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005479 · Cited by 74 · see citing works
Zhang, J., Tang, W. D., Huang, Y., Niu, X., Zhao, Y. J., Han, Y., & Liu, Y. (2014) · Journal of Experimental Botany · doi:10.1093/jxb/eru396 · Cited by 70 · see citing works
Majer, C., Xu, C., Berendzen, K. W., & Hochholdinger, F. (2012) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2011.0238 · Cited by 69 · see citing works
CRISPR/Cas9-Mediated Multiplex Genome Editing of JAGGED Gene in Brassica napus L.
Zaman, Q. U., Chu, W., Hao, M., Shi, Y., Sun, M., Sang, S., Mei, D., Cheng, H., Liu, J., Li, C., et al. (2019) · Biomolecules · doi:10.3390/biom9110725 · Cited by 68 · see citing works
Inducible Gene Expression Systems for Plants
Borghi, L. (2010) · Methods in molecular biology · doi:10.1007/978-1-60761-765-5_5 · Cited by 64 · see citing works
Self-citationLu, Q., Shao, F., MacMillan, C. P., Wilson, I. W., van der Merwe, K., Hussey, S. G., Myburg, A. A., Dong, X., & Qiu, D. (2017) · Plant Biotechnology Journal · doi:10.1111/pbi.12754 · Cited by 63 · see citing works
Besnard, F., Vernoux, T., & Hamant, O. (2011) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-011-0732-4 · Cited by 62 · see citing works
Dimerization in LBD16 and LBD18 Transcription Factors Is Critical for Lateral Root Formation
Lee, H. W., Kang, N. Y., Pandey, S. K., Cho, C., Lee, S. H., & Kim, J. (2017) · PLANT PHYSIOLOGY · doi:10.1104/pp.17.00013 · Cited by 61 · see citing works
Grimplet, J., Pimentel, D., Agudelo‐Romero, P., Martínez-Zapater, J. M., & Fortes, A. M. (2017) · Scientific Reports · doi:10.1038/s41598-017-16240-5 · Cited by 61 · see citing works
Mangeon, A., Bell, E. M., Lin, W.-C., Jablonska, B., & Springer, P. S. (2010) · Journal of Experimental Botany · doi:10.1093/jxb/erq259 · Cited by 59 · see citing works
Lateral organ boundaries domain transcription factors
Thatcher, L. F., Kazan, K., & Manners, J. M. (2012) · Plant Signaling & Behavior · doi:10.4161/psb.22097 · Cited by 57 · see citing works
Johnston, A. J., Kirioukhova, O., Barrell, P. J., Rutten, T. L. M., Moore, J. M., Baskar, R., Grossniklaus, U., & Gruissem, W. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1000988 · Cited by 53 · see citing works
Bureau, M., Rast, M. I., Illmer, J., & Simon, R. (2010) · Plant Molecular Biology · doi:10.1007/s11103-010-9688-2 · Cited by 56 · see citing works
Self-citationThe vascular cambium: molecular control of cellular structure
Risopatron, J. P. M., Sun, Y., & Jones, B. J. (2010) · PROTOPLASMA · doi:10.1007/s00709-010-0211-z · Cited by 52 · see citing works
Huang, B., Huang, Z., Ma, R., Ramakrishnan, M., Chen, J., Zhang, Z., & Yrjälä, K. (2021) · BMC Plant Biology · doi:10.1186/s12870-021-03078-3 · Cited by 49 · see citing works
Sun, X., Feng, Z., Meng, L., Zhu, J., & Geitmann, A. (2013) · Planta · doi:10.1007/s00425-013-1844-x · Cited by 49 · see citing works
Guo, B., Wang, J., Lin, S., Tian, Z., Zhou, K., Luan, H., Lyu, C., Zhang, X., & Xu, R. (2016) · Journal of Zhejiang University SCIENCE B · doi:10.1631/jzus.b1500277 · Cited by 42 · see citing works
Transcriptome Analysis of Cytokinin Response in Tomato Leaves
Shi, X., Gupta, S., Lindquist, I. E., Cameron, C. T., Mudge, J., & Rashotte, A. M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0055090 · Cited by 41 · see citing works
Taking the very first steps: from polarity to axial domains in the early Arabidopsis embryo
Jeong, S., Bayer, M. J., & Lukowitz, W. (2010) · Journal of Experimental Botany · doi:10.1093/jxb/erq398 · Cited by 39 · see citing works
Yang, H., Shi, G., Du, H., Wang, H., Zhang, Z., Hu, D., Wang, J., Huang, F., & Yu, D. (2017) · The Plant Genome · doi:10.3835/plantgenome2016.07.0058 · Cited by 40 · see citing works
Ma, W., Wu, F., Sheng, P., Wang, X., Zhang, Z., Zhou, K., Zhang, H., Hu, J., Lin, Q., Cheng, Z., et al. (2016) · PLANT PHYSIOLOGY · doi:10.1104/pp.16.01699 · Cited by 38 · see citing works
Jeon, E., Kang, N. Y., Cho, C., Seo, P. J., Suh, M. C., & Kim, J. (2017) · Plant and Cell Physiology · doi:10.1093/pcp/pcx153 · Cited by 37 · see citing works
A survey of dominant mutations in Arabidopsis thaliana
Meinke, D. W. (2012) · Trends in Plant Science · doi:10.1016/j.tplants.2012.08.006 · Cited by 37 · see citing works
Gómez, M. D., Úrbez, C., Perez-Amador, M. A., & Carbonell, J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0018760 · Cited by 35 · see citing works
Drawing a Line: Grasses and Boundaries
Richardson, A. E., & Hake, S. (2018) · Plants · doi:10.3390/plants8010004 · Cited by 36 · see citing works
Aintegumenta and Aintegumenta-Like6 regulate auxin-mediated flower development in Arabidopsis
Krizek, B. A. (2011) · BMC Research Notes · doi:10.1186/1756-0500-4-176 · Cited by 33 · see citing works
Hu, G., Zhang, D., Luo, D., Sun, W., Zhou, R., Hong, Z., Munir, S., Ye, Z., Yang, C., Zhang, J., et al. (2023) · New Phytologist · doi:10.1111/nph.19221 · Cited by 30 · see citing works
Ren, J., Liu, Z., Du, J., Fu, W., Hou, A., & Feng, H. (2019) · Molecular Breeding · doi:10.1007/s11032-019-0944-0 · Cited by 29 · see citing works
Kim, M., & Kim, J. (2012) · Journal of Plant Physiology · doi:10.1016/j.jplph.2012.04.004 · Cited by 29 · see citing works
Ram, H., Sahadevan, S., Gale, N., Caggiano, M. P., Yu, X., Ohno, C. K., & Heisler, M. G. (2020) · PLoS Genetics · doi:10.1371/journal.pgen.1008661 · Cited by 28 · see citing works
Auxin Regulation of Embryonic Root Formation
Yoshida, S., Saiga, S., & Weijers, D. (2012) · Plant and Cell Physiology · doi:10.1093/pcp/pcs170 · Cited by 28 · see citing works
GIP1 may act as a coactivator that enhances transcriptional activity of LBD18 in Arabidopsis
Lee, H. W., Park, J. H., Park, M. Y., & Kim, J. (2013) · Journal of Plant Physiology · doi:10.1016/j.jplph.2013.11.003 · Cited by 27 · see citing works
Characterization of the LBD gene family in Brachypodium: a phylogenetic and transcriptional study
Gombos, M., Zombori, Z., Szécsényi, M., Sándor, G., Kovács, H., & Györgyey, J. (2016) · Plant Cell Reports · doi:10.1007/s00299-016-2057-0 · Cited by 27 · see citing works
The ATP-Binding Cassette Transporter ABCB19 Regulates Postembryonic Organ Separation in Arabidopsis
Zhao, H., Liu, L., Mo, H., Qian, L., Cao, Y., Cui, S., Li, X., & Ma, L. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060809 · Cited by 26 · see citing works
The LOB domain protein, a novel transcription factor with multiple functions: A review
Rong, M., Gao, S., Wen, D., Xu, Y., & Wei, J. (2024) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2024.108922 · Cited by 25 · see citing works
Functional divergence in the Arabidopsis LOB-domain gene family
Mangeon, A., Lin, W.-C., & Springer, P. S. (2012) · Plant Signaling & Behavior · doi:10.4161/psb.22320 · Cited by 22 · see citing works
Yang, T., Fang, G. Y., He, H., & Chen, J. (2016) · PLoS ONE · doi:10.1371/journal.pone.0161901 · Cited by 22 · see citing works
Berger, F., Vu, M. T., Li, J., & Chen, B. (2012) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2012.77.014514 · Cited by 22 · see citing works
The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
Frerichs, A., Thoma, R., Abdallah, A. T., Frommolt, P., Werr, W., & Chandler, J. (2016) · BMC Genomics · doi:10.1186/s12864-016-3189-x · Cited by 21 · see citing works
Dhakal, K., Zhu, Q., Zhang, B., Li, M., & Li, S. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.614926 · Cited by 18 · see citing works
Gynoecium Patterning in Arabidopsis: A Basic Plan behind a Complex Structure
Sundberg, E., & Ferrándiz, C. (2009) · Wiley-Blackwell eBooks · doi:10.1002/9781444314557.ch2 · Cited by 18 · see citing works
Toward Molecular Understanding of In Vitro and In Planta Shoot Organogenesis
Meng, L., Zhang, S., & Lemaux, P. G. (2010) · Critical Reviews in Plant Sciences · doi:10.1080/07352681003617327 · Cited by 19 · see citing works
Molecular dissection of the pea shoot apical meristem*
Liang, D., Wong, C. E., Singh, M. B., Beveridge, C. A., Phipson, B., Smyth, G. K., & Bhalla, P. L. (2009) · Journal of Experimental Botany · doi:10.1093/jxb/erp254 · Cited by 18 · see citing works
CLAUSA restricts tomato leaf morphogenesis and GOBLET expression
Bar, M., Ben‐Herzel, O., Kohay, H., Shtein, I., & Ori, N. (2015) · The Plant Journal · doi:10.1111/tpj.12936 · Cited by 16 · see citing works
Xu, X., Lin, H., Zhang, J., Burguener, G., Paraiso, F., Li, K., Tumelty, C., Li, C., Liu, Y., & Dubcovsky, J. (2025) · Genome biology · doi:10.1186/s13059-025-03811-3 · Cited by 15 · see citing works
The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin
Rast-Somssich, M. I., Žádníková, P., Schmid, S. P. C., Kieffer, M., Kepinski, S., & Simon, R. G. (2017) · Journal of Experimental Botany · doi:10.1093/jxb/erx131 · Cited by 15 · see citing works
Self-citationZhao, T., Specht, C. D., Dong, Z., Ye, Y., Liu, H., & Liao, J. (2020) · Plant Growth Regulation · doi:10.1007/s10725-020-00575-7 · Cited by 15 · see citing works
Cui, X., Wang, T., Chen, H., Busov, V. B., & Wei, H. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-425 · Cited by 15 · see citing works
SlARF2a plays a negative role in mediating axillary shoot formation
Xu, T., Liu, X., Wang, R., Dong, X., Guan, X., Wang, Y., Jiang, Y., Shi, Z., Qi, M., & Li, T. (2016) · Scientific Reports · doi:10.1038/srep33728 · Cited by 14 · see citing works
Sun, X., Feng, Z., & Meng, L. (2012) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-012-0140-y · Cited by 13 · see citing works
- Authors
- Borghi, L., Bureau, M., & Simon, R.
- Affiliations
- Heinrich Heine University Düsseldorf (DE)
- Institut für Genetik, Heinrich-Heine-Universität, 40225 Düsseldorf, Germany
- ORCID
- Borghi, Lorenzo
- Venue
- The Plant Cell
- Publisher
- Oxford University Press (OUP)
- Published
- 2007-06-01
- Volume
- 19
- Issue
- 6
- Pages
- 1795-1808
- ISSN
- 1040-4651 (ISSN-L)
- 1532-298X
- PMC
- PMC1955719
- OpenAlex
- W2096198247
- Cited by
- 161
- References
- 52
- Citations by year
- 2026: 2 · 2025: 7 · 2024: 6 · 2023: 3 · 2022: 2 · 2021: 11 · 2020: 6 · 2019: 2 · 2018: 4 · 2017: 11 · 2016: 8 · 2015: 12 · 2014: 6 · 2013: 11 · 2012: 15
- FWCI
- 17.42
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
- Locations
- The Plant Cell (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- European Commission
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Parasitism and Resistance
- Keywords
- KNOX genes, PIN auxin transporters, shoot apical meristem, organ primordia, leaf lobes, SHOOT MERISTEMLESS, embryonic development, organ boundaries, auxin transport, Arabidopsis thaliana
- MeSH terms
- Biological Transport, Genes, Dominant, Indoleacetic Acids, Mutation, Phenotype, Repressor Proteins, Seeds, Transcription Factors, Signal Transduction, Genes, Plant, Arabidopsis, Homeodomain Proteins, Gene Expression Regulation, Plant, Cell Cycle Proteins, Membrane Transport Proteins, Arabidopsis Proteins, Embryonic Development, Mutant Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review