Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish

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Use of plant extracts in fish aquaculture as an alternative to chemotherapy: Current status and future perspectives

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A review on the interactions between gut microbiota and innate immunity of fish: Table 1

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A new view of the fish gut microbiome: advances from next-generation sequencing

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The composition of the zebrafish intestinal microbial community varies across development

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Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

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Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation

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Metagenomics and industrial applications

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Characterization of the gut microbiota of three commercially valuable warmwater fish species

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The β-glucan receptor dectin-1 functions together with TLR2 to mediate macrophage activation by mycobacteria

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A probiotic strain of Vibrio alginolyticus effective in reducing diseases caused by Aeromonas salmonicida, Vibrio anguillarum and Vibrio ordalii

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Probiotics as beneficial microbes in aquaculture: an update on their multiple modes of action: a review

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Phylogenetic Analysis of Intestinal Microflora Indicates a Novel Mycoplasma Phylotype in Farmed and Wild Salmon

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Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery

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Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

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Effect of a mannan oligosaccharide on the growth performance and immune status of rainbow trout (Oncorhynchus mykiss)

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Effects of dietary soyabean meal, inulin and oxytetracycline on intestinal microbiota and epithelial cell stress, apoptosis and proliferation in the teleost Atlantic salmon (Salmo salar L.)

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Comparison of the gut microbiomes of 12 bony fish and 3 shark species

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Meat as a First Complementary Food for Breastfed Infants: Feasibility and Impact on Zinc Intake and Status

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Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

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The effects of dietary supplementation with mannanoligosaccharide, fructooligosaccharide or galactooligosaccharide on the growth and feed utilization of Atlantic salmon (Salmo salar)

Grisdale-Helland, B., Helland, S. J., & Gatlin, D. M. (2008) · Aquaculture · doi:10.1016/j.aquaculture.2008.07.012 · Cited by 302

Insights into Antibiotic Resistance Through Metagenomic Approaches

Schmieder, R., & Edwards, R. (2012) · Future Microbiology · doi:10.2217/fmb.11.135 · Cited by 301

The impact of rearing environment on the development of gut microbiota in tilapia larvae

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Dietary brewers yeast and the prebiotic Grobiotic™AE influence growth performance, immune responses and resistance of hybrid striped bass (Morone chrysops×M. saxatilis) to Streptococcus iniae infection

Li, P. (2004) · Aquaculture · doi:10.1016/j.aquaculture.2003.08.021 · Cited by 294

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

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Metagenomic analysis of viruses in reclaimed water

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Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes

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The effect of Pediococcus acidilactici on the gut microbiota and immune status of on-growing red tilapia (Oreochromis niloticus): Probiotic applications for tilapia

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Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum)

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Effects of dietary prebiotics on growth performance, immune response and intestinal morphology of red drum (Sciaenops ocellatus)

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Environment shapes the fecal microbiome of invasive carp species

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Factors influencing the grass carp gut microbiome and its effect on metabolism

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Characterization of integrons and tetracycline resistance determinants in Aeromonas spp. isolated from South African aquaculture systems

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Effect of dietary inulin and oligosaccharides as prebiotics for weaning turbot, Psetta maxima (Linnaeus, C. 1758)

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Diversity of Tetracycline Resistance Genes in Bacteria from Chilean Salmon Farms

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Diet strongly influences the gut microbiota of surgeonfishes

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Dietary supplementation of fructooligosaccharide (FOS) improves the innate immune response, stress resistance, digestive enzyme activities and growth performance of Caspian roach (Rutilus rutilus) fry

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16S rDNA-Based Analysis of Dominant Bacterial Populations Associated with Early Life Stages of Coho Salmon (Oncorhynchus kisutch)

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New Insights into the Diversity of Marine Picoeukaryotes

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Effect of dietary supplementation of inulin and vitamin C on the growth, hematology, innate immunity, and resistance of Nile tilapia (Oreochromis niloticus)

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Protective effects and mechanisms of a probiotic bacterium Lactobacillus rhamnosus against experimental Edwardsiella tarda infection in tilapia (Oreochromis niloticus)

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Bacterial resistance to oxytetracycline in Chilean salmon farming

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Systematic review: probiotics in the management of lower gastrointestinal symptoms in clinical practice - an evidence-based international guide

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Quantifying environmental adaptation of metabolic pathways in metagenomics

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Combined effects of dietary fructooligosaccharide and Bacillus licheniformis on innate immunity, antioxidant capability and disease resistance of triangular bream (Megalobrama terminalis)

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Evaluation of the prebiotic GroBiotic®-A and brewers yeast as dietary supplements for sub-adult hybrid striped bass (Morone chrysops×M. saxatilis) challenged in situ with Mycobacterium marinum

Li, P., & Gatlin, D. M. (2005) · Aquaculture · doi:10.1016/j.aquaculture.2005.03.005 · Cited by 202

Molecular characterisation of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.)

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Evolution of probiotics in aquatic world: Potential effects, the current status in Egypt and recent prospectives

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Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

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Impact of Fishmeal Replacement in Diets for Gilthead Sea Bream (Sparus aurata) on the Gastrointestinal Microbiota Determined by Pyrosequencing the 16S rRNA Gene

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Use of a probiotic for the culture of larvae of the Pacific oyster (Crassostrea gigas Thunberg)

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Administration of Probiotic Strain to Improve Sea Bream Wellness during Development

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Probiotics for preventing ventilator-associated pneumonia

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Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)

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The influence of the human microbiome and probiotics on cardiovascular health

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Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing

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The functionality of the gastrointestinal microbiome in non-human animals

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Diversity and seasonal changes in lactic acid bacteria in the intestinal tract of cultured freshwater fish

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From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems

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Effects of dietary arabinoxylan-oligosaccharides (AXOS) and endogenous probiotics on the growth performance, non-specific immunity and gut microbiota of juvenile Siberian sturgeon (Acipenser baerii)

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Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces

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Oxytetracycline Treatment Reduces Bacterial Diversity of Intestinal Microbiota of Atlantic Salmon

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Virus Identification in Unknown Tropical Febrile Illness Cases Using Deep Sequencing

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Prebiotics in Finfish: An Update

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Diversity of tetracycline resistance genes in bacteria from aquaculture sources in Australia: Tetracycline resistance aquaculture

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Bacterial diversity in a marine hatchery: Balance between pathogenic and potentially probiotic bacterial strains

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Nonmedical Uses of Antibiotics: Time to Restrict Their Use?

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