The DOI matches its Crossref record; 75 of the 75 references it cites were found in a registry or an index.
The microbiome of uncontacted Amerindians
Open accessAbstract
Fecal, oral, and skin biomes of isolated Amerindians show higher human bacterial diversity including antibiotic resistance genes.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Figures




Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Although no living population today carries an ancestral microbiome, comparison studies of non-Western and Western populations show significant differences in the relative abundances of common phyla and a much greater species diversity in non-Western populations [126,127].”
From Polycystic Ovary Syndrome: An Evolutionary Adaptation to Lifestyle and the Environment (2022) · cites this paper as [127]
Experimental — accuracy not yet measuredIn the citing paper
“The gut microbiota of eight hunter–gatherer or rural farming populations in various parts of the world showed increased bacterial diversity compared with those of Western populations19,40,52–55.”
From Diet–microbiota interactions as moderators of human metabolism (2016) · cites this paper as [55]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr121 · Cited by 40,166
vegan: Community Ecology Package
Oksanen, J., Simpson, G. L., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O’Hara, R. B., Sólymos, P., Stevens, M. H. H., Szöcs, E., et al. (2001) · doi:10.32614/cran.package.vegan · Cited by 27,099
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010) · Systematic Biology · doi:10.1093/sysbio/syq010 · Cited by 18,376
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192
An obesity-associated gut microbiome with increased capacity for energy harvest
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624
Self-citation
Cited by
Sorted by citations
Gut microbiota in human metabolic health and disease
Fan, Y., & Pedersen, O. (2021) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0433-9 · Cited by 4,724
The ecology of the microbiome: Networks, competition, and stability
Coyte, K. Z., Schlüter, J., & Foster, K. R. (2015) · Science · doi:10.1126/science.aad2602 · Cited by 2,812
The impact of dietary fiber on gut microbiota in host health and disease
Makki, K., Deehan, E. C., Walter, J., & Bäckhed, F. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.05.012 · Cited by 2,517
Self-citationDiet–microbiota interactions as moderators of human metabolism
Sonnenburg, J. L., & Bäckhed, F. (2016) · Nature · doi:10.1038/nature18846 · Cited by 2,257
Extensive impact of non-antibiotic drugs on human gut bacteria
Maier, L., Pruteanu, M., Kuhn, M., Zeller, G., Telzerow, A., Anderson, E. E., Brochado, A. R., Fernandez, K. C., Dose, H., Mori, H., et al. (2018) · Nature · doi:10.1038/nature25979 · Cited by 1,905
Lloyd-Price, J., Abu-Ali, G., & Huttenhower, C. (2016) · Genome Medicine · doi:10.1186/s13073-016-0307-y · Cited by 1,891
You are what you eat: Diet, health and the gut microbiota
Zmora, N., Suez, J., & Elinav, E. (2019) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-018-0061-2 · Cited by 1,792
Diet-induced extinctions in the gut microbiota compound over generations
Sonnenburg, E. D., Smits, S. A., Tikhonov, M., Higginbottom, S. K., Wingreen, N. S., & Sonnenburg, J. L. (2016) · Nature · doi:10.1038/nature16504 · Cited by 1,730
Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer
von Wintersdorff, C. J. H., Penders, J., van Niekerk, J. M., Mills, N. D., Majumder, S., van Alphen, L. B., Savelkoul, P. H. M., & Wolffs, P. F. G. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00173 · Cited by 1,707
Gut microbial metabolites as multi-kingdom intermediates
Krautkramer, K. A., Fan, J., & Bäckhed, F. (2021) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0438-4 · Cited by 1,398
Defining and combating antibiotic resistance from One Health and Global Health perspectives
Hernando‐Amado, S., Coque, T. M., Baquero, F., & Martínez, J. L. (2019) · Nature Microbiology · doi:10.1038/s41564-019-0503-9 · Cited by 1,290
The microbiome in early life: Implications for health outcomes
Tamburini, S., Shen, N., Wu, H. C., & Clemente, J. C. (2016) · Nature Medicine · doi:10.1038/nm.4142 · Cited by 1,213
Self-citationYassour, M., Vatanen, T., Siljander, H., Hämäläinen, A.-M., Härkönen, T., Ryhänen, S. J., Franzosa, E. A., Vlamakis, H., Huttenhower, C., Gevers, D., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aad0917 · Cited by 1,043
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
Dominguez-Bello, M. G., De Jesus-Laboy, K. M., Shen, N., Cox, L. M., Amir, A., Gonzalez, A., Bokulich, N. A., Song, S. J., Hoashi, M., Rivera-Vinas, J. I., et al. (2016) · Nature Medicine · doi:10.1038/nm.4039 · Cited by 1,014
Self-citationDietary fibre in gastrointestinal health and disease
Gill, S. K., Rossi, M., Bajka, B., & Whelan, K. (2021) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-020-00375-4 · Cited by 979
Antibiotics and the Human Gut Microbiome: Dysbioses and Accumulation of Resistances
Francino, M. P. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01543 · Cited by 990
Langdon, A. E., Crook, N., & Dantas, G. A. (2016) · Genome Medicine · doi:10.1186/s13073-016-0294-z · Cited by 968
Self-citationAntibiotics as Major Disruptors of Gut Microbiota
Ramirez, J., Guarner, F., Fernández, L. B., Saito, A. M., Sdepanian, V. L., & Cohen, H. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.572912 · Cited by 981
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
Smits, S. A., Leach, J., Sonnenburg, E. D., Gonzalez, C. G., Lichtman, J. S., Reid, G., Knight, R., Manjurano, A., Changalucha, J., Elias, J. E., et al. (2017) · Science · doi:10.1126/science.aan4834 · Cited by 886
Self-citationAmerican Gut: an Open Platform for Citizen-Science Microbiome Research
McDonalda, D., Hyde, E., Debelius, J. W., Morton, J. T., Gonzalez, A., Ackermann, G., Aksenov, A. A., Behsaz, B., Brennan, C., Chen, Y., et al. (2018) · doi:10.1101/277970 · Cited by 878
Self-citationUS immigration westernizes the human gut microbiome
Vangay, P., Johnson, A. J., Ward, T. L., Al-Ghalith, G. A., Shields-Cutler, R. R., Hillmann, B. M., Lucas, S. K., Beura, L. K., Thompson, E. A., Till, L. M., et al. (2018) · Cell · doi:10.1016/j.cell.2018.10.029 · Cited by 794
Antibiotic use and its consequences for the normal microbiome
Blaser, M. J. (2016) · Science · doi:10.1126/science.aad9358 · Cited by 836
Self-citationGut instincts: microbiota as a key regulator of brain development, ageing and neurodegeneration
Dinan, T. G., & Cryan, J. F. (2017) · The Journal of Physiology · doi:10.1113/jp273106 · Cited by 813
Role of the microbiome in human development
Domínguez-Bello, M. G., Godoy‐Vitorino, F., Knight, R. D., & Blaser, M. J. (2019) · Gut · doi:10.1136/gutjnl-2018-317503 · Cited by 820
Self-citationMicrobiota and Host Nutrition across Plant and Animal Kingdoms
Hacquard, S., Garrido-Oter, R., González, A., Spaepen, S., Ackermann, G., Lebeis, S., McHardy, A. C., Dangl, J. L., Knight, R., Ley, R., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.009 · Cited by 779
Self-citationImpact of antibiotics on the human microbiome and consequences for host health
Patangia, D. V., Ryan, C. A., Dempsey, E. M., Ross, R. P., & Stanton, C. (2022) · MicrobiologyOpen · doi:10.1002/mbo3.1260 · Cited by 861
Siamese Neural Networks: An Overview
Chicco, D. (2020) · Methods in molecular biology · doi:10.1007/978-1-0716-0826-5_3 · Cited by 726
Intestinal Microbiota Is Influenced by Gender and Body Mass Index
Haro, C., Rangel-Zúñiga, O. A., Alcalá-Díaz, J. F., Gómez-Delgado, F., Pérez-Martínez, P., Delgado-Lista, J., Quintana-Navarro, G. M., Landa, B. B., Navas-Cortés, J. A., Tena-Sempere, M., et al. (2016) · PLOS ONE · doi:10.1371/journal.pone.0154090 · Cited by 671
“In line with this, studies in humans have shown that gut microbiota seems to have coevolved with dietary habit [11, 12].”
ResultSelf-citationDietary fibre modulates the gut microbiota
Cronin, P., Joyce, S. A., O’Toole, P. W., & O’Connor, E. M. (2021) · Nutrients · doi:10.3390/nu13051655 · Cited by 658
The Gut Microbiota in the First Decade of Life
Derrien, M., Alvarez, A., & de Vos, W. M. (2019) · Trends in Microbiology · doi:10.1016/j.tim.2019.08.001 · Cited by 682
Interconnected microbiomes and resistomes in low-income human habitats
Pehrsson, E. C., Tsukayama, P., Patel, S., Mejía-Bautista, M., Sosa-Soto, G., Navarrete, K. M., Calderon, M., Cabrera, L., Hoyos-Arango, W., Bertoli, M. T., et al. (2016) · Nature · doi:10.1038/nature17672 · Cited by 607
Self-citationThe role of the gut microbiome in systemic inflammatory disease
Clemente, J. C., Manasson, J., & Scher, J. U. (2018) · BMJ · doi:10.1136/bmj.j5145 · Cited by 587
Self-citationExploration of the Muribaculaceae Family in the Gut Microbiota: Diversity, Metabolism, and Function
Zhu, Y., Chen, B., Zhang, X., Akbar, M. T., Wu, T., Zhang, Y., Zhi, L., & Shen, Q. (2024) · Nutrients · doi:10.3390/nu16162660 · Cited by 596
Antibiotic resistance in Pseudomonas aeruginosa – Mechanisms, epidemiology and evolution
Botelho, J., Grosso, F., & Peixe, L. M. S. V. (2019) · Drug Resistance Updates · doi:10.1016/j.drup.2019.07.002 · Cited by 590
Next-generation approaches to understand and combat the antibiotic resistome
Crofts, T. S., Gasparrini, A. J., & Dantas, G. A. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.28 · Cited by 545
Self-citationThe ancestral and industrialized gut microbiota and implications for human health
Sonnenburg, E. D., & Sonnenburg, J. L. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0191-8 · Cited by 489
Captivity humanizes the primate microbiome
Clayton, J. B., Vangay, P., Huang, H., Ward, T., Hillmann, B., Al‐Ghalith, G. A., Travis, D. A., Long, H. T., Tuan, B. V., Minh, V. V., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1521835113 · Cited by 522
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
Janssen, S., McDonald, D., Gonzalez, A., Navas-Molina, J. A., Jiang, L., Xu, Z. Z., Winker, K., Kado, D. M., Orwoll, E., Manary, M., et al. (2018) · mSystems · doi:10.1128/msystems.00021-18 · Cited by 536
Self-citationThe gut microbiome of healthy Japanese and its microbial and functional uniqueness
Nishijima, S., Suda, W., Oshima, K., Kim, S.-W., Hirose, Y., Morita, H., & Hattori, M. (2016) · DNA Research · doi:10.1093/dnares/dsw002 · Cited by 513
Iljazovic, A., Roy, U., Gálvez, E. J. C., Lesker, T. R., Zhao, B., Gronow, A., Amend, L., Will, S. E., Hofmann, J. D., Pils, M. C., et al. (2021) · Mucosal Immunology · doi:10.1038/s41385-020-0296-4 · Cited by 454
Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
Song, S. J., Amir, A., Metcalf, J. L., Amato, K. R., Xu, Z. Z., Humphrey, G. C., & Knight, R. D. (2016) · mSystems · doi:10.1128/msystems.00021-16 · Cited by 495
Self-citationThe Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems
Willis, J. R., & Gabaldón, T. (2020) · Microorganisms · doi:10.3390/microorganisms8020308 · Cited by 495
The human microbiome in evolution
Davenport, E. R., Sanders, J. G., Song, S. J., Amato, K. R., Clark, A. G., & Knight, R. (2017) · BMC Biology · doi:10.1186/s12915-017-0454-7 · Cited by 393
Self-citationCaselli, E., Fabbri, C., D’Accolti, M., Soffritti, I., Bassi, C., Mazzacane, S., & Franchi, M. (2020) · BMC Microbiology · doi:10.1186/s12866-020-01801-y · Cited by 410
Human microbiomes and their roles in dysbiosis, common diseases, and novel therapeutic approaches
Belizário, J. E., & Napolitano, M. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01050 · Cited by 389
Kim, D., & Cha, C. (2021) · Experimental & Molecular Medicine · doi:10.1038/s12276-021-00569-z · Cited by 396
Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice
Livanos, A. E., Greiner, T. U., Vangay, P., Pathmasiri, W., Stewart, D. A., McRitchie, S., Li, H., Chung, J., Sohn, J., Kim, S. S., et al. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.140 · Cited by 364
Self-citationMicrobiome and colorectal cancer: Roles in carcinogenesis and clinical potential
Saus, E., Iraola‐Guzmán, S., Willis, J. R., Brunet‐Vega, A., & Gabaldón, T. (2019) · Molecular Aspects of Medicine · doi:10.1016/j.mam.2019.05.001 · Cited by 363
Blood metabolome predicts gut microbiome α-diversity in humans
Wilmanski, T. M., Rappaport, N., Earls, J. C., Magis, A. T., Manor, O., Lovejoy, J. C., Omenn, G. S., Hood, L., Gibbons, S. M., & Price, N. D. (2019) · Nature Biotechnology · doi:10.1038/s41587-019-0233-9 · Cited by 320
Drivers of Microbiome Biodiversity: A Review of General Rules, Feces, and Ignorance
Reese, A. T., & Dunn, R. R. (2018) · mBio · doi:10.1128/mbio.01294-18 · Cited by 343
Gacias, M., Gaspari, S., Santos, P.-M. G., Tamburini, S., Andrade, M., Zhang, F., Shen, N., Tolstikov, V., Kiebish, M. A., Dupree, J. L., et al. (2016) · eLife · doi:10.7554/elife.13442 · Cited by 308
Self-citationGut microbiota diversity across ethnicities in the United States
Brooks, A. W., Priya, S., Blekhman, R., & Bordenstein, S. R. (2018) · PLOS Biology · doi:10.1371/journal.pbio.2006842 · Cited by 304
Fujio, S., Vasquez, Y., Morales, P., Magne, F., Vera-Wolf, P., Ugalde, J. A., Navarrete, P., & Gotteland, M. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01221 · Cited by 309
The microbiome beyond the horizon of ecological and evolutionary theory
Koskella, B. L., Hall, L. J., & Metcalf, C. J. E. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0340-2 · Cited by 292
Social behavior shapes the chimpanzee pan-microbiome
Moeller, A. H., Foerster, S., Wilson, M. L., Pusey, A. E., Hahn, B. H., & Ochman, H. (2016) · Science Advances · doi:10.1126/sciadv.1500997 · Cited by 298
Mobile genes in the human microbiome are structured from global to individual scales
Brito, I. L., Yilmaz, S., Huang, K., Xu, L., Jupiter, S. D., Jenkins, A. P., Naisilisili, W., Tamminen, M., Smillie, C. S., Wortman, J. R., et al. (2016) · Nature · doi:10.1038/nature18927 · Cited by 288
Urbanization and the gut microbiota in health and inflammatory bowel disease
Zuo, T., Kamm, M. A., Colombel, J., & Ng, S. C. (2018) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-018-0003-z · Cited by 298
Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi
Auchtung, T. A., Fofanova, T. Y., Stewart, C. J., Nash, A. K., Wong, M. C., Gesell, J. R., Auchtung, J. M., Ajami, N. J., & Petrosino, J. F. (2018) · mSphere · doi:10.1128/msphere.00092-18 · Cited by 296
Biogeography of the Oral Microbiome: The Site-Specialist Hypothesis
Mark Welch, J. L., Dewhirst, F. E., & Borisy, G. G. (2019) · Annual Review of Microbiology · doi:10.1146/annurev-micro-090817-062503 · Cited by 284
Exploring Bacteroidetes: Metabolic key points and immunological tricks of our gut commensals
Gibiino, G., Lopetuso, L. R., Scaldaferri, F., Rizzatti, G., Binda, C., & Gasbarrini, A. (2018) · Digestive and Liver Disease · doi:10.1016/j.dld.2018.03.016 · Cited by 285
Ma, Z., Zuo, T., Frey, N., & Rangrez, A. Y. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-01946-6 · Cited by 322
Richards, J. L., Yap, Y. A., McLeod, K. H., Mackay, C. R., & Mariño, E. (2016) · Clinical & Translational Immunology · doi:10.1038/cti.2016.29 · Cited by 250
Aguayo‐Mazzucato, C., Diaque, P., Hernandez, S. L., Rosas, S., Kostic, A. D., & Caballero, A. E. (2018) · Diabetes/Metabolism Research and Reviews · doi:10.1002/dmrr.3097 · Cited by 263
An Overview of the Applications of Nanomaterials and Nanodevices in the Food Industry
Shafiq, M., Anjum, S., Hano, C., Anjum, I., & Abbasi, B. H. (2020) · Foods · doi:10.3390/foods9020148 · Cited by 239
The impact of skin care products on skin chemistry and microbiome dynamics
Bouslimani, A., da Silva, R., Kosciolek, T., Janssen, S., Callewaert, C., Amir, A., Dorrestein, K., Melnik, A. V., Zaramela, L. S., Kim, J.-N., et al. (2019) · BMC Biology · doi:10.1186/s12915-019-0660-6 · Cited by 234
Self-citationMorton, E. R., Lynch, J., Froment, A., Lafosse, S., Heyer, E., Przeworski, M., Blekhman, R., & Ségurel, L. (2015) · PLOS Genetics · doi:10.1371/journal.pgen.1005658 · Cited by 231
The skin microbiome of vertebrates
Stegelmeier, A. A., Hoffmann, A. R., & Neufeld, J. D. (2019) · Microbiome · doi:10.1186/s40168-019-0694-6 · Cited by 240
Transmission of the gut microbiota: spreading of health
Browne, H. P., Neville, B. A., Forster, S. C., & Lawley, T. D. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.50 · Cited by 232
Brown, K., Uwiera, R. R. E., Kalmokoff, M. L., Brooks, S., & Inglis, G. D. (2016) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2016.08.006 · Cited by 245
Performing Skin Microbiome Research: A Method to the Madness
Kong, H. H., Andersson, B., Clavel, T., Common, J., Jackson, S. A., Olson, N. D., Segre, J. A., & Traidl‐Hoffmann, C. (2017) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2016.10.033 · Cited by 232
Deehan, E. C., Duar, R. M., Armet, A. M., Pérez-Muñoz, M. E., Jin, M., & Walter, J. (2017) · Microbiology Spectrum · doi:10.1128/microbiolspec.bad-0019-2017 · Cited by 240
Self-citationStegelmeier, A. A., Müller, K. M., Weese, J. S., & Neufeld, J. D. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1801302115 · Cited by 224
Public human microbiome data are dominated by highly developed countries
Abdill, R. J., Adamowicz, E. M., & Blekhman, R. (2022) · PLoS Biology · doi:10.1371/journal.pbio.3001536 · Cited by 221
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes
Carter, M. M., Olm, M. R., Merrill, B. D., Dahan, D., Tripathi, S. M., Spencer, S. P., Yu, F. B., Jain, S., Neff, N. F., Jha, A. R., et al. (2023) · Cell · doi:10.1016/j.cell.2023.05.046 · Cited by 233
The theory of disappearing microbiota and the epidemics of chronic diseases
Blaser, M. J. (2017) · Nature reviews. Immunology · doi:10.1038/nri.2017.77 · Cited by 214
Self-citationNIH Human Microbiome Portfolio Analysis Team (2019) · Microbiome · doi:10.1186/s40168-019-0620-y · Cited by 215
Preserving microbial diversity
Domínguez-Bello, M. G., Knight, R. D., Gilbert, J. A., & Blaser, M. J. (2018) · Science · doi:10.1126/science.aau8816 · Cited by 207
Self-citationAntibiotic resistance genes as an emerging environmental contaminant
Sanderson, H., Fricker, C. R., Brown, R. S., Majury, A. L., & Liss, S. N. (2016) · Environmental Reviews · doi:10.1139/er-2015-0069 · Cited by 201
A diverse intrinsic antibiotic resistome from a cave bacterium
Pawlowski, A. C., Wang, W., Koteva, K. K., Barton, H. A., McArthur, A. G., & Wright, G. D. (2016) · Nature Communications · doi:10.1038/ncomms13803 · Cited by 205
González, M. E., Schaffer, J. V., Orlow, S. J., Gao, Z., Li, H., Alekseyenko, A. V., & Blaser, M. J. (2016) · Journal of the American Academy of Dermatology · doi:10.1016/j.jaad.2016.04.066 · Cited by 201
Self-citationGálvez, E. J. C., Iljazović, A., Amend, L., Lesker, T. R., Renault, T. T., Thiemann, S., Hao, L., Roy, U., Gronow, A., Charpentier, E., et al. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.09.012 · Cited by 191
Harnessing Gut Microbes for Mental Health: Getting From Here to There
Bruce‐Keller, A. J., Salbaum, J. M., & Berthoud, H. (2017) · Biological Psychiatry · doi:10.1016/j.biopsych.2017.08.014 · Cited by 192
Rebollar, E. A., Hughey, M. C., Medina, D., Harris, R. N., Ibáñez, R., & Belden, L. K. (2016) · The ISME Journal · doi:10.1038/ismej.2015.234 · Cited by 194
Diet and microbiota linked in health and disease
Requena, T., Martínez‐Cuesta, M. C., & Peláez, C. (2018) · Food & Function · doi:10.1039/c7fo01820g · Cited by 191
MetaCompare: a computational pipeline for prioritizing environmental resistome risk
Oh, M., Pruden, A. J., Chen, C., Heath, L. S., Xia, K., & Zhang, L. (2018) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiy079 · Cited by 189
The Threat of Antimicrobial Resistance on the Human Microbiome
Brinkac, L. M., Voorhies, A. A., Gomez, A. M., & Nelson, K. E. (2017) · Microbial Ecology · doi:10.1007/s00248-017-0985-z · Cited by 201
Gut microbiome transition across a lifestyle gradient in Himalaya
Jha, A. R., Davenport, E., Gautam, Y., Bhandari, D., Tandukar, S., Ng, K. M., Fragiadakis, G. K., Holmes, S., Gautam, G. P., Leach, J. D., et al. (2018) · PLoS Biology · doi:10.1371/journal.pbio.2005396 · Cited by 187
A Comprehensive Analysis of the Global Human Gut Archaeome from a Thousand Genome Catalogue
Chibani, C. M., Mahnert, A., Borrel, G., Almeida, A., Werner, A., Brugère, J., Gribaldo, S., Finn, R. D., Schmitz, R. A., & Moissl‐Eichinger, C. (2020) · Nature Microbiology · doi:10.1038/s41564-021-01020-9 · Cited by 186
The global human gut microbiome: genes, lifestyles, and diet
Parizadeh, M., & Arrieta, M. (2023) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2023.07.002 · Cited by 205
Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity
Segata, N. (2015) · Current Biology · doi:10.1016/j.cub.2015.05.040 · Cited by 190
Food additives, contaminants and other minor components: effects on human gut microbiota—a review
Roca-Saavedra, P., Mendez-Vilabrille, V., Miranda, J. M., Lamas, A., Nebot, C., Cardelle‐Cobas, A., Cepeda, A., & Cepeda, A. (2017) · Journal of Physiology and Biochemistry · doi:10.1007/s13105-017-0564-2 · Cited by 204
Feng, J., Li, B. J., Jiang, X., Yang, Y. J., Wells, G., Zhang, T., & Li, X. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.14009 · Cited by 188
Does Soil Contribute to the Human Gut Microbiome?
Blum, W. E. H., Zechmeister‐Boltenstern, S., & Keiblinger, K. M. (2019) · Microorganisms · doi:10.3390/microorganisms7090287 · Cited by 199
Asthma and the microbiome: defining the critical window in early life
Stiemsma, L. T., & Turvey, S. E. (2017) · Allergy Asthma and Clinical Immunology · doi:10.1186/s13223-016-0173-6 · Cited by 189
The evolution and changing ecology of the African hominid oral microbiome
Yates, J. A. F., Velsko, I. M., Aron, F., Posth, C., Hofman, C. A., Austin, R. M., Parker, C., Mann, A. E., Nägele, K., Arthur, K. W., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2021655118 · Cited by 180
Linking the Gut Microbial Ecosystem with the Environment: Does Gut Health Depend on Where We Live?
Tasnim, N., Abulizi, N., Pither, J., Hart, M. M., & Gibson, D. L. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01935 · Cited by 188
Gut microbiota: A new target for T2DM prevention and treatment
Liu, L., Zhang, J., Cheng, Y., Zhu, M., Xiao, Z., Ruan, G., & Wei, Y. (2022) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.958218 · Cited by 187
Meta‐analysis of the human gut microbiome from urbanized and pre‐agricultural populations
Mancabelli, L., Milani, C., Lugli, G. A., Turroni, F., Ferrario, C., van Sinderen, D., & Ventura, M. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13692 · Cited by 179
The effects of oral microbiota on health
Tuganbaev, T., Yoshida, K., & Honda, K. (2022) · Science · doi:10.1126/science.abn1890 · Cited by 177
Oliver, A., Chase, A. B., Weihe, C., Orchanian, S. B., Riedel, S. F., Hendrickson, C. L., Lay, M., Sewall, J. M., Martiny, J. B. H., & Whiteson, K. (2021) · mSystems · doi:10.1128/msystems.00115-21 · Cited by 171
Metadata
- Authors
- Clemente, J. C., Pehrsson, E. C., Blaser, M. J., Sandhu, K., Gao, Z., Wang, B., Magris, M., Hidalgo, G., Contreras, M., Noya-Alarcón, Ó., Lander, O., McDonald, J., Cox, M., Walter, J., Oh, P. L., Ruiz, J. F., Rodriguez, S., Shen, N., Song, S. J., Metcalf, J., Knight, R., Dantas, G., & Dominguez-Bello, M. G.
- Affiliations
- Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
- Washington University in St. Louis (US)
- United States Department of Veterans Affairs (US)
- New York University (US)
- Amazonic Center for Research and Control of Tropical Diseases (CAICET), Puerto Ayacucho 7101, Venezuela.
- Venezuelan Institute for Scientific Research, Caracas 1020-A, Venezuela.
- Universidad Central de Venezuela (VE)
- AnMed Health (US)
- University of Nebraska–Lincoln (US)
- University of Puerto Rico at Río Piedras (PR)
- Icahn School of Medicine at Mount Sinai (US)
- University of Colorado Boulder (US)
- Howard Hughes Medical Institute (US)
- New York University School of Medicine, New York, NY 10016, USA.
- Corresponding author
- Pehrsson, Erica C.
- Sandhu, Kuldip
- Walter, Jens
- Knight, Rob
- ORCID
- Venue
- Science Advances
- Published
- 2015-04-03
- Volume
- 1
- Issue
- 3
- ISSN
- 2375-2548 (ISSN-L)
- PMC
- PMC4517851
- OpenAlex
- W1986189475
- Cited by
- 851
- References
- 74
- Citations by year
- 2026: 35 · 2025: 55 · 2024: 59 · 2023: 72 · 2022: 81 · 2021: 88 · 2020: 90 · 2019: 103 · 2018: 77 · 2017: 72 · 2016: 86 · 2015: 31
- FWCI
- 38.52
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by-nc
- Locations
- Science Advances (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Digital Commons@Becker (Washington University School of Medicine) (submittedVersion)
- Rutgers University Community Repository (Rutgers University) (submittedVersion)
- Lincoln (University of Nebraska) (submittedVersion, cc-by-nc)
- eScholarship (California Digital Library) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by-nc)
- Funders
- C&D Research Fund (ID0EWFBG929)
- Emch Research Fund (ID0EBMBG930)
- NIH SCORE-PES RISE (ID0EMSBG931, 2R25GM061151-13)
- SUCCESS (ID0EZYBG932)
- Leona M. and Harry B. Helmsley Charitable Trust (ID0ET1BG933)
- NIH NIDDK (ID0EN3BG934, DK062429)
- NAKFI Synthetic Biology (ID0EJ5BG935, SB2, ID0ECAAI936)
- NIH Director’s New Innovator Award (ID0EYBAI937, NIDDK DP2-DK098089)
- NIH NIGMS (ID0EQDAI938, R01-GM099538)
- Washington University I-CARES (ID0EIFAI939)
- NIH NIAMS (ID0E5GAI940, UH2AR057506)
- Diane Belfer Program for Human Microbial Ecology (ID0EYIAI941)
- NDSEG (ID0EQKAI942)
- Howard Hughes Medical Institute (ID0EEMAI943)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Microbiology (medical) › Antibiotic Resistance in Bacteria
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- human microbiome, resistome, antibiotic resistance genes, Yanomami, isolated populations, Westernization, bacterial diversity, synthetic antibiotics, gut microbiota, oral microbiota, skin microbiome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review