Cited by 101Fungal and yeast genetics researchAntifungal resistance and susceptibilityFungal Infections and Studies

Pseudohyphal growth of the emerging pathogen Candida auris is triggered by genotoxic stress through the S phase checkpoint

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Bravo Ruiz, Gustavo, Ross, Zoe K., Gow, Neil A. R., Lorenz, Alexander·2020·mSphere

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Abstract

Candida auris is a newly emerged fungal pathogen of humans. This species was first reported in 2009 when it was identified in an ear infection of a patient in Japan. However, despite intense interest in this organism as an often multidrug-resistant fungus, there is little knowledge about its cellular biology. During infection of human patients, fungi are able to change cell shape from ellipsoidal yeast cells to elongated filaments to adapt to various conditions within the host organism. There are different types of filaments, which are triggered by reactions to different cues. Candida auris fails to form filaments when exposed to triggers that stimulate yeast filament morphogenesis in other fungi. Here, we show that it does form filaments when its DNA is damaged. These conditions might arise when Candida auris cells interact with host immune cells or during growth in certain host tissues (kidney or bladder) or during treatment with antifungal drugs.

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  • Certain Candida species can transition from yeast forms to filamentous structures, producing true hyphae in species like C. albicans, C. dubliniensis, and C. tropicalis, or pseudohyphae in species such as C. auris and C. parapsilosis.

    “Certain Candida species can transition from yeast forms to filamentous structures, producing true hyphae in species like C. albicans, C. dubliniensis, and C. tropicalis, or pseudohyphae in species such as C. auris and C. parapsilosis96–98.”

    From Distinct echinocandin responses of Candida albicans and Candida auris cell walls revealed by solid-state NMR (2025) · cites this paper as [97]

    The Results section on genes associated with hyphal growth identifies C. albicans, C. tropicalis, and C. dubliniensis as capable of forming true hyphae. The Results section on C. auris reports pseudohyphae under genotoxic stress. The paper says C. parapsilosis cannot form true hyphae, but does not say it forms pseudohyphae; it also notes that C. auris filamentation varies by strain. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • Clinical isolates of C. auris can exhibit different morphotypes such as filamentous, pseudohyphal, and yeast forms.

    “Clinical isolates of C. auris can exhibit different morphotypes such as filamentous, pseudohyphal, and yeast forms (8–14).”

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  1. [1]Satoh K, Makimura K, Hasumi Y, Nishiyama Y, Uchida K, Yamaguchi H 2009 Candida auris sp. nov., a novel ascomycetous yeast isolated from the external ear canal of an inpatient in a Japanese hospital. Microbiol Immunol 53: 41– 44. doi: 10.1111/j.1348-0421.2008.00083.x. 19161556 · DOI · Paper page
  2. [2]Kwon YJ, Shin JH, Byun SA, Choi MJ, Won EJ, Lee D, Lee SY, Chun S, Lee JH, Choi HJ, Kee SJ, Kim SH, Shin MG 2019 Candida auris clinical isolates from South Korea: identification, antifungal susceptibility, and genotyping. J Clin Microbiol 57: e01624-18. doi: 10.1128/JCM.01624-18. 30728190 PMC6440790 · DOI
  3. [4]Lone SA, Ahmad A 2019 Candida auris—the growing menace to global health. Mycoses 62: 620– 637. doi: 10.1111/myc.12904. 30773703 · DOI
  4. [5]Kean R, Ramage G 2019 Combined antifungal resistance and biofilm tolerance: the global threat of Candida auris. mSphere 4: e00458-19. doi: 10.1128/mSphere.00458-19. 31366705 PMC6669339 · DOI
  5. [6]Forsberg K, Woodworth K, Walters M, Berkow EL, Jackson B, Chiller T, Vallabhaneni S 2019 Candida auris: the recent emergence of a multidrug-resistant fungal pathogen. Med Mycol 57: 1– 12. doi: 10.1093/mmy/myy054. 30085270 · DOI · Paper page
  6. [7]Jackson BR, Chow N, Forsberg K, Litvintseva AP, Lockhart SR, Welsh R, Vallabhaneni S, Chiller T 2019 On the origins of a species: what might explain the rise of Candida auris? J Fungi (Baseo) 5: E58. doi: 10.3390/jof5030058. PMC6787658 31284576 · DOI
  7. [8]Casadevall A, Kontoyiannis DP, Robert V 2019 On the emergence of Candida auris: climate change, azoles, swamps, and birds. mBio 10: e01397-19. doi: 10.1128/mBio.01397-19. 31337723 PMC6650554 · DOI · Paper page
  8. [9]Sudbery P, Gow N, Berman J 2004 The distinct morphogenic states of Candida albicans. Trends Microbiol 12: 317– 324. doi: 10.1016/j.tim.2004.05.008. 15223059 · DOI · Paper page
  9. [12]Cullen PJ, Sprague GF 2012 The regulation of filamentous growth in yeast. Genetics 190: 23– 49. doi: 10.1534/genetics.111.127456. 22219507 PMC3249369 · DOI
  10. [13]Noble SM, Gianetti BA, Witchley JN 2017 Candida albicans cell-type switching and functional plasticity in the mammalian host. Nat Rev Microbiol 15: 96– 108. doi: 10.1038/nrmicro.2016.157. 27867199 PMC5957277 · DOI
  11. [14]Thompson DS, Carlisle PL, Kadosh D 2011 Coevolution of morphology and virulence in Candida Species. Eukaryot Cell 10: 1173– 1182. doi: 10.1128/EC.05085-11. 21764907 PMC3187052 · DOI
  12. [15]Wang X, Bing J, Zheng Q, Zhang F, Liu J, Yue H, Tao L, Du H, Wang Y, Wang H, Huang G 2018 The first isolate of Candida auris in China: clinical and biological aspects. Emerg Microbes Infect 7: 93. doi: 10.1038/s41426-018-0095-0. 29777096 PMC5959928 · DOI · Paper page
  13. [16]Kron SJ, Gow NA 1995 Budding yeast morphogenesis: signalling, cytoskeleton and cell cycle. Curr Opin Cell Biol 7: 845– 855. doi: 10.1016/0955-0674(95)80069-7. 8608015 · DOI
  14. [17]Pardo B, Crabbé L, Pasero P 2017 Signaling pathways of replication stress in yeast. FEMS Yeast Res 17: fow101. doi: 10.1093/femsyr/fow101. 27915243 · DOI
  15. [18]Bachewich C, Nantel A, Whiteway M 2005 Cell cycle arrest during S or M phase generates polarized growth via distinct signals in Candida albicans. Mol Microbiol 57: 942– 959. doi: 10.1111/j.1365-2958.2005.04727.x. 16091036 · DOI
  16. [19]Jiang YW, Kang CM 2003 Induction of S. cerevisiae filamentous differentiation by slowed DNA synthesis involves Mec1, Rad53 and Swe1 checkpoint proteins. Mol Biol Cell 14: 5116– 5124. doi: 10.1091/mbc.e03-06-0375. 14565980 PMC284813 · DOI
  17. [20]Shi Q-M, Wang Y-M, De Zheng X, Lee RTH, Wang Y 2007 Critical role of DNA checkpoints in mediating genotoxic-stress–induced filamentous growth in Candida albicans. Mol Biol Cell 18: 815– 826. doi: 10.1091/mbc.e06-05-0442. 17182857 PMC1805102 · DOI
  18. [21]Yue H, Bing J, Zheng Q, Zhang Y, Hu T, Du H, Wang H, Huang G 2018 Filamentation in Candida auris, an emerging fungal pathogen of humans: passage through the mammalian body induces a heritable phenotypic switch. Emerg Microbes Infect 7: 188. doi: 10.1038/s41426-018-0187-x. 30482894 PMC6258701 · DOI · Paper page
  19. [22]Nyholm S, Thelander L, Gräslund A 1993 Reduction and loss of the iron center in the reaction of the small subunit of Mouse ribonucleotide reductase with hydroxyurea. Biochemistry 32: 11569– 11574. doi: 10.1021/bi00094a013. 8218224 · DOI
  20. [23]Poli J, Tsaponina O, Crabbé L, Keszthelyi A, Pantesco V, Chabes A, Lengronne A, Pasero P 2012 dNTP pools determine fork progression and origin usage under replication stress. EMBO J 31: 883– 894. doi: 10.1038/emboj.2011.470. 22234185 PMC3280562 · DOI
  21. [24]Vázquez MV, Rojas V, Tercero JA 2008 Multiple pathways cooperate to facilitate DNA replication fork progression through alkylated DNA. DNA Repair (Amst) 7: 1693– 1704. doi: 10.1016/j.dnarep.2008.06.014. 18640290 · DOI
  22. [25]Grem JL 2000 5-Fluorouracil: forty-plus and still ticking. A review of its preclinical and clinical development. Invest New Drugs 18: 299– 313. doi: 10.1023/a:1006416410198. 11081567 · DOI
  23. [26]Sherry L, Ramage G, Kean R, Borman A, Johnson EM, Richardson MD, Rautemaa-Richardson R 2017 Biofilm-forming capability of highly virulent, multidrug-resistant Candida auris. Emerg Infect Dis 23: 328– 331. doi: 10.3201/eid2302.161320. 28098553 PMC5324806 · DOI · Paper page
  24. [27]Jin R, Dobry CJ, McCown PJ, Kumar A 2008 Large-scale analysis of yeast filamentous growth by systematic gene disruption and overexpression. Mol Biol Cell 19: 284– 196. doi: 10.1091/mbc.e07-05-0519. 17989363 PMC2174193 · DOI
  25. [28]Ryan O, Shapiro RS, Kurat CF, Mayhew D, Baryshnikova A, Chin B, Lin ZY, Cox MJ, Vizeacoumar F, Cheung D, Bahr S, Tsui K, Tebbji F, Sellam A, Istel F, Schwarzmüller T, Reynolds TB, Kuchler K, Gifford DK, Whiteway M, Giaever G, Nislow C, Costanzo M, Gingras AC, Mitra RD, Andrews B, Fink GR, Cowen LE, Boone C 2012 Global gene deletion analysis exploring yeast filamentous growth. Science 337: 1352– 1356. doi: 10.1126/science.1224339. 22984072 · DOI
  26. [29]Azadmanesh J, Gowen AM, Creger PE, Schafer ND, Blankenship JR 2017 Filamentation involves two overlapping, but distinct, programs of filamentation in the pathogenic fungus Candida albicans. G3 (Bethesda) 7: 3797– 3808. doi: 10.1534/g3.117.300224. 28951491 PMC5677161 · DOI
  27. [30]Munoz JF, Gade L, Chow NA, Loparev VN, Juieng P, Farrer RA, Litvintseva AP, Cuomo CA 2018 Genomic basis of multidrug-resistance, mating, and virulence in Candida auris and related emerging species. Nat Commun 9: 5346. doi: 10.1038/s41467-018-07779-6. 30559369 PMC6297351 · DOI · Paper page
  28. [31]Lo W, Dranginis AM 1998 The cell surface flocculin Flo11 is required for pseudohyphae formation and invasion by Saccharomyces cerevisiae. Mol Biol Cell 9: 161– 171. doi: 10.1091/mbc.9.1.161. 9436998 PMC25236 · DOI
  29. [32]Vinod PK, Sengupta N, Bhat PJ, Venkatesh KV 2008 Integration of global signaling pathways, cAMP-PKA, MAPK and TOR in the regulation of FLO11. PLoS One 3: e1663. doi: 10.1371/journal.pone.0001663. 18301741 PMC2246015 · DOI
  30. [33]Younes SS, Khalaf RA 2013 The Candida albicans Hwp2p can complement the lack of filamentation of a Saccharomyces cerevisiae flo11 null strain. Microbiology 159: 1160– 1164. doi: 10.1099/mic.0.067249-0. 23558263 · DOI
  31. [34]Braun BR, Johnson AD 1997 Control of filament formation in Candida albicans by the transcriptional repressor TUP1. Science 277: 105– 109. doi: 10.1126/science.277.5322.105. 9204892 · DOI
  32. [35]Braun BR, Head WS, Wang MX, Johnson AD 2000 Identification and characterization of TUP1-regulated genes in Candida albicans. Genetics 156: 31– 44. 10978273 PMC1461230
  33. [36]Legrand M, Chan CL, Jauert PA, Kirkpatrick DT 2007 Role of DNA mismatch repair and double-strand break repair in genome stability and antifungal drug resistance in Candida albicans. Eukaryot Cell 6: 2194– 2205. doi: 10.1128/EC.00299-07. 17965250 PMC2168241 · DOI
  34. [37]García-Prieto F, Gómez-Raja J, Andaluz E, Calderone R, Larriba G 2010 Role of the homologous recombination genes RAD51 and RAD59 in the resistance of Candida albicans to UV light, radiomimetic and anti-tumor compounds and oxidizing agents. Fungal Genet Biol 47: 433– 445. doi: 10.1016/j.fgb.2010.02.007. 20206282 PMC2852118 · DOI
  35. [38]Wang G, Tong X, Weng S, Zhou H 2012 Multiple phosphorylation of Rad9 by CDK is required for DNA damage checkpoint activation. Cell Cycle 11: 3792– 3800. doi: 10.4161/cc.21987. 23070520 PMC3495822 · DOI
  36. [39]González-Prieto R, Muñoz-Cabello AM, Cabello-Lobato MJ, Prado F 2013 Rad51 replication fork recruitment is required for DNA damage tolerance. EMBO J 32: 1307– 1321. doi: 10.1038/emboj.2013.73. 23563117 PMC3642682 · DOI
  37. [40]Alcasabas AA, Osborn AJ, Bachant J, Hu F, Werler PJH, Bousset K, Furuya K, Diffley JFX, Carr AM, Elledge SJ 2001 Mrc1 transduces signals of DNA replication stress to activate Rad53. Nat Cell Biol 3: 958– 965. doi: 10.1038/ncb1101-958. 11715016 · DOI
  38. [41]Osborn AJ, Elledge SJ 2003 Mrc1 is a replication fork component whose phosphorylation in response to DNA replication stress activates Rad53. Genes Dev 17: 1755– 1767. doi: 10.1101/gad.1098303. 12865299 PMC196183 · DOI
  39. [42]Andaluz E, Ciudad T, Gómez-Raja J, Calderone R, Larriba G 2006 Rad52 depletion in Candida albicans triggers both the DNA-damage checkpoint and filamentation accompanied by but independent of expression of hypha-specific genes. Mol Microbiol 59: 1452– 1472. doi: 10.1111/j.1365-2958.2005.05038.x. 16468988 · DOI
  40. [43]Lockhart SR, Etienne KA, Vallabhaneni S, Farooqi J, Chowdhary A, Govender NP, Colombo AL, Calvo B, Cuomo CA, Desjardins CA, Berkow EL, Castanheira M, Magobo RE, Jabeen K, Asghar RJ, Meis JF, Jackson B, Chiller T, Litvintseva AP 2017 Simultaneous emergence of multidrug-resistant Candida auris on 3 continents confirmed by whole-genome sequencing and epidemiological analyses. Clin Infect Dis 64: 134– 140. doi: 10.1093/cid/ciw691. 27988485 PMC5215215 · DOI · Paper page
  41. [44]Chakrabarti A, Sood P, Rudramurthy SM, Chen S, Kaur H, Capoor M, Chhina D, Rao R, Eshwara VK, Xess I, Kindo AJ, Umabala P, Savio J, Patel A, Ray U, Mohan S, Iyer R, Chander J, Arora A, Sardana R, Roy I, Appalaraju B, Sharma A, Shetty A, Khanna N, Marak R, Biswas S, Das S, Harish BN, Joshi S, Mendiratta D 2015 Incidence, characteristics and outcome of ICU-acquired candidemia in India. Intensive Care Med 41: 285– 295. doi: 10.1007/s00134-014-3603-2. 25510301 · DOI · Paper page
  42. [45]Rhodes J, Abdolrasouli A, Farrer RA, Cuomo CA, Aanensen DM, Armstrong-James D, Fisher MC, Schelenz S 2018 Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris. Emerg Microbes Infect 43: 1– 12. doi: 10.1038/s41426-018-0045-x. PMC5874254 29593275 · DOI · Paper page
  43. [46]Zheng X, Wang Y, Wang Y 2004 Hgc1, a novel hypha-specific G1 cyclin-related protein regulates Candida albicans hyphal morphogenesis. EMBO J 23: 1845– 1856. doi: 10.1038/sj.emboj.7600195. 15071502 PMC394249 · DOI
  44. [47]Braun BR, Kadosh D, Johnson AD 2001 NRG1, a repressor of filamentous growth in C. albicans, is down-regulated during filament induction. EMBO J 20: 4753– 4761. doi: 10.1093/emboj/20.17.4753. 11532939 PMC125265 · DOI
  45. [49]Bachewich C, Thomas DY, Whiteway M 2003 Depletion of a Polo-like kinase in Candida albicans activates Cyclase-dependent hyphal-like growth. Mol Biol Cell 14: 2163– 2180. doi: 10.1091/mbc.02-05-0076. 12802083 PMC165105 · DOI
  46. [50]Chen C, Zeng G, Wang Y 2018 G1 and S phase arrest in Candida albicans induces filamentous growth via distinct mechanisms. Mol Microbiol 110: 191– 203. doi: 10.1111/mmi.14097. 30084240 · DOI
  47. [51]Bacal J, Moriel‐Carretero M, Pardo B, Barthe A, Sharma S, Chabes A, Lengronne A, Pasero P 2018 Mrc1 and Rad9 cooperate to regulate initiation and elongation of DNA replication in response to DNA damage. EMBO J 37: 1– 18. doi: 10.15252/embj.201899319. 30158111 PMC6213276 · DOI
  48. [52]Lopes M, Cotta-Ramusino C, Liberi G, Foiani M 2003 Branch migrating sister chromatid junctions form at replication origins through Rad51/Rad52-independent mechanisms. Mol Cell 12: 1499– 1510. doi: 10.1016/s1097-2765(03)00473-8. 14690603 · DOI
  49. [54]Hashimoto Y, Chaudhuri AR, Lopes M, Costanzo V 2010 Rad51 protects nascent DNA from Mre11-dependent degradation and promotes continuous DNA synthesis. Nat Struct Mol Biol 17: 1305– 1311. doi: 10.1038/nsmb.1927. 20935632 PMC4306207 · DOI
  50. [55]Petermann E, Orta ML, Issaeva N, Schultz N, Helleday T 2010 Hydroxyurea-stalled replication forks become progressively inactivated and require two different RAD51-mediated pathways for restart and repair. Mol Cell 37: 492– 502. doi: 10.1016/j.molcel.2010.01.021. 20188668 PMC2958316 · DOI
  51. [56]Prado F 2018 Homologous recombination: to fork and beyond. Genes (Basel) 9: 603. doi: 10.3390/genes9120603. PMC6316604 30518053 · DOI
  52. [57]Zaragoza O, Nielsen K 2013 Titan cells in Cryptococcus neoformans: cells with a giant impact. Curr Opin Microbiol 16: 409– 413. doi: 10.1016/j.mib.2013.03.006. 23588027 PMC3723695 · DOI
  53. [58]Dambuza IM, Drake T, Chapuis A, Zhou X, Correia J, Taylor-Smith L, LeGrave N, Rasmussen T, Fisher MC, Bicanic T, Harrison TS, Jaspars M, May RC, Brown GD, Yuecel R, MacCallum DM, Ballou ER 2018 The Cryptococcus neoformans Titan cell is an inducible and regulated morphotype underlying pathogenesis. PLoS Pathog 14: e1006978. doi: 10.1371/journal.ppat.1006978. 29775474 PMC5959070 · DOI · Paper page
  54. [59]Malavia D, Lehtovirta-Morley LE, Alamir O, Weiß E, Gow NAR, Hube B, Wilson D 2017 Zinc limitation induces a hyper-adherent Goliath phenotype in Candida albicans. Front Microbiol 8: 2238. doi: 10.3389/fmicb.2017.02238. 29184547 PMC5694484 · DOI · Paper page
  55. [60]Loll-Krippleber R, Enfert C, Feri A, Diogo D, Perin A, Marcet-Houben M, Bougnoux M, Legrand M 2014 A study of the DNA damage checkpoint in Candida albicans: uncoupling of the functions of Rad53 in DNA repair, cell cycle regulation and genotoxic stress-induced polarized growth. Mol Microbiol 91: 452– 471. doi: 10.1111/mmi.12471. 24286230 · DOI
  56. [61]Legrand M, Chan CL, Jauert PA, Kirkpatrick DT 2011 The contribution of the S-phase checkpoint genes MEC1 and SGS1 to genome stability maintenance in Candida albicans. Fungal Genet Biol 48: 823– 830. doi: 10.1016/j.fgb.2011.04.005. 21511048 PMC3126902 · DOI
  57. [62]Katou Y, Kanoh Y, Bando M, Noguchi H, Tanaka H, Ashikari T, Sugimoto K, Shirahige K 2003 S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex. Nature 424: 1078– 1083. doi: 10.1038/nature01900. 12944972 · DOI
  58. [63]Masai H, Yang CC, Matsumoto S 2017 Mrc1/Claspin: a new role for regulation of origin firing. Curr Genet 63: 813– 818. doi: 10.1007/s00294-017-0690-y. 28357499 · DOI
  59. [64]Miller CT, Gabrielse C, Chen YC, Weinreich M 2009 Cdc7p-Dbf4p regulates mitotic exit by inhibiting Polo kinase. PLoS Genet 5: e1000498. doi: 10.1371/journal.pgen.1000498. 19478884 PMC2682205 · DOI
  60. [65]Asano S, Park JE, Sakchaisri K, Yu LR, Song S, Supavilai P, Veenstra TD, Lee KS 2005 Concerted mechanism of Swe1/Wee1 regulation by multiple kinases in budding yeast. EMBO J 24: 2194– 2204. doi: 10.1038/sj.emboj.7600683. 15920482 PMC1150880 · DOI
  61. [66]Zhang T, Nirantar S, Lim HH, Sinha I, Surana U 2009 DNA damage checkpoint maintains Cdh1 in an active state to inhibit anaphase progression. Dev Cell 17: 541– 551. doi: 10.1016/j.devcel.2009.09.006. 19853567 · DOI
  62. [67]Simpson-Lavy KJ, Brandeis M 2010 Clb2 and the APC/CCdh1 regulate Swe1 stability. Cell Cycle 9: 3046– 3053. doi: 10.4161/cc.9.115.12457. 20714223 · DOI
  63. [68]Pruyne D, Bretscher A 2000 Polarization of cell growth in yeast. I. Establishment and maintenance of polarity states. J Cell Sci 113: 365– 375. 10639324
  64. [69]Lew DJ 2003 The morphogenesis checkpoint: how yeast cells watch their figures. Curr Opin Cell Biol 15: 648– 653. doi: 10.1016/j.ceb.2003.09.001. 14644188 · DOI
  65. [70]Ahn SH, Acurio A, Kron SJ 1999 Regulation of G2/M progression by the STE mitogen-activated protein kinase pathway in budding yeast filamentous growth. Mol Biol Cell 10: 3301– 3316. doi: 10.1091/mbc.10.10.3301. 10512868 PMC25595 · DOI
  66. [72]Wu X, Jiang YW 2005 Possible integration of upstream signals at Cdc42 in filamentous differentiation of S. cerevisiae. Yeast 22: 1069– 1077. doi: 10.1002/yea.1294. 16200521 · DOI
  67. [73]Shapiro RS, Cowen LE 2010 Coupling temperature sensing and development: hsp90 regulates morphogenetic signaling in Candida albicans. Virulence 1: 45– 48. doi: 10.4161/viru.1.1.10320. 21178413 PMC3080193 · DOI
  68. [74]Khurana N, Laskar S, Bhattacharyya MK, Bhattacharyya S 2016 Hsp90 induces increased genomic instability toward DNA-damaging agents by tuning down RAD53 transcription. Mol Biol Cell 27: 2463– 2478. doi: 10.1091/mbc.E15-12-0867. 27307581 PMC4966986 · DOI
  69. [75]Bravo Ruiz G, Ross ZK, Holmes E, Schelenz S, Gow NAR, Lorenz A 2019 Rapid and extensive karyotype diversification in haploid clinical Candida auris isolates. Curr Genet 65: 1217– 1228. doi: 10.1007/s00294-019-00976-w. 31020384 PMC6744574 · DOI · Paper page
  70. [76]Lee KL, Buckley HR, Campbell CC 1975 An amino acid liquid synthetic medium for the development of mycellal and yeast forms of Candida albicans. Sabouraudia 13: 148– 153. doi: 10.1080/00362177585190271. 808868 · DOI
  71. [77]Fortuna M, Sousa MJ, Corte-Real M, Leao C, Salvador A, Sansonetty F 2000 Cell cycle analysis of yeasts. Curr Protoc Cytom Chapter 11: Unit 11.13. doi: 10.1002/0471142956.cy1113s13. 18770687 · DOI
  72. [78]Burke D, Dawson D, Stearns T 2000 Methods in yeast genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  73. [79]Vyas VK, Barrasa MI, Fink GR 2015 A Candida albicans CRISPR system permits genetic engineering of essential genes and gene families. Sci Adv 1: e1500248. doi: 10.1126/sciadv.1500248. 25977940 PMC4428347 · DOI
  74. [80]Shevchuk NA, Bryksin AV, Nusinovich YA, Cabello FC, Sutherland M, Ladisch S 2004 Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously. Nucleic Acids Res 32: e19. doi: 10.1093/nar/gnh014. 14739232 PMC373371 · DOI
  75. [81]Walther A, Wendland J 2003 An improved transformation protocol for the human fungal pathogen Candida albicans. Curr Genet 42: 339– 343. doi: 10.1007/s00294-002-0349-0. 12612807 · DOI
  76. [83]Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ 2009 Jalview version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189– 1191. doi: 10.1093/bioinformatics/btp033. 19151095 PMC2672624 · DOI
  77. [84]Li H, Durbin R 2010 Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589– 595. doi: 10.1093/bioinformatics/btp698. 20080505 PMC2828108 · DOI · Paper page
  78. [85]Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009 The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078– 2079. doi: 10.1093/bioinformatics/btp352. 19505943 PMC2723002 · DOI · Paper page
  79. [86]Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, Earl AM 2014 Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One 9: e112963. doi: 10.1371/journal.pone.0112963. 25409509 PMC4237348 · DOI
  80. [87]Stanke M, Steinkamp R, Waack S, Morgenstern B 2004 AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res 32: W309– W312. doi: 10.1093/nar/gkh379. 15215400 PMC441517 · DOI

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Authors
Bravo Ruiz, G., Ross, Z. K., Gow, N. A. R., & Lorenz, A.
Affiliations
  • Institute of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom
  • University of Aberdeen (GB)
  • University of Exeter (GB)
Corresponding author
Lorenz, Alexander
Venue
mSphere
Published
2020-04-29
Volume
5
Issue
2
ISSN
2379-5042 (ISSN-L)
OpenAlex
W3012011716
Cited by
101
References
7
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Language
en
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  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
  • Figshare (submittedVersion, cc-by)
  • Open Research Exeter (University of Exeter) (submittedVersion, cc-by)
Funders
  • Wellcome Trust (212524/Z/18/Z)
  • UK Research and Innovation | Medical Research Council (MR/P501955/2, MR/N006364/2)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
  • Health Sciences › Medicine › Infectious Diseases › Antifungal resistance and susceptibility
  • Health Sciences › Medicine › Epidemiology › Fungal Infections and Studies
Keywords
Candida auris, pseudohyphal growth, genotoxic stress, DNA damage, S-phase checkpoint, yeast-to-hypha transition, antifungal resistance, emerging fungal pathogens, host-pathogen interaction
MeSH terms
Adaptation, Physiological, Candida, DNA Damage, DNA, Fungal, Flucytosine, Hydroxyurea, Methyl Methanesulfonate, Mutagens, Virulence, Hyphae, Host-Pathogen Interactions, S Phase Cell Cycle Checkpoints

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

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