Persistence of Supplemented Bifidobacterium longum subsp. infantis EVC001 in Breastfed Infants

QIIME allows analysis of high-throughput community sequencing data

Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887 · see citing works

Search and clustering orders of magnitude faster than BLAST

Edgar, R. C. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq461 · Cited by 20,617 · see citing works

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C., Turnbaugh, P. J., Fierer, N., & Knight, R. D. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000080107 · Cited by 9,633 · see citing works

Primer3—new capabilities and interfaces

Untergasser, A., Cutcutache, I., Kõressaar, T., Ye, J., Faircloth, B., Remm, M., & Rozen, S. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks596 · Cited by 9,165 · see citing works

Conservation evaluation and phylogenetic diversity

Faith, D. (1992) · Biological Conservation · doi:10.1016/0006-3207(92)91201-3 · Cited by 5,495 · see citing works

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774 · see citing works

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

Bokulich, N. A., Subramanian, S., Faith, J. J., Gevers, D., Gordon, J. I., Knight, R. D., Mills, D. A., & Caporaso, J. G. (2012) · Nature Methods · doi:10.1038/nmeth.2276 · Cited by 4,409 · see citing works

Proteobacteria: Microbial signature of dysbiosis in gut microbiota

Shin, N.-R., Whon, T. W., & Bae, J.-W. (2015) · Trends in Biotechnology · doi:10.1016/j.tibtech.2015.06.011 · Cited by 3,954 · see citing works

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

Bäckhed, F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.004 · Cited by 3,315 · see citing works

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

Morgan, X. C., Tickle, T. L., Sokol, H., Gevers, D., Devaney, K. L., Ward, D. V., Reyes, J. A., Shah, S. A., LeLeiko, N., Snapper, S. B., et al. (2012) · Genome Biology · doi:10.1186/gb-2012-13-9-r79 · Cited by 2,713 · see citing works

Enhancements and modifications of primer design program Primer3

Kõressaar, T., & Remm, M. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm091 · Cited by 2,618 · see citing works

Bifidobacteria can protect from enteropathogenic infection through production of acetate

Fukuda, S., Toh, H., Hase, K., Oshima, K., Nakanishi, Y., Yoshimura, K., Tobe, T., Clarke, J. M., Topping, D. L., Suzuki, T., et al. (2011) · Nature · doi:10.1038/nature09646 · Cited by 2,387 · see citing works

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

Walters, W. A., Hyde, E. R., Berg-Lyons, D., Ackermann, G. L., Humphrey, G. C., Parada, A. E., Gilbert, J. A., Jansson, J. K., Caporaso, J. G., Fuhrman, J. A., et al. (2015) · mSystems · doi:10.1128/msystems.00009-15 · Cited by 2,202 · see citing works

The Long-Term Stability of the Human Gut Microbiota

Faith, J. J., Guruge, J. L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A. L., Clemente, J. C., Knight, R., Heath, A. C., Leibel, R. L., et al. (2013) · Science · doi:10.1126/science.1237439 · Cited by 2,058 · see citing works

Detecting outliers when fitting data with nonlinear regression – a new method based on robust nonlinear regression and the false discovery rate

Motulsky, H. J., & Brown, R. E. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-123 · Cited by 1,616 · see citing works

Antibiotics, birth mode, and diet shape microbiome maturation during early life

Bokulich, N. A., Chung, J., Battaglia, T., Henderson, N., Jay, M., Li, H., D. Lieber, A., Wu, F., Perez-Perez, G. I., Chen, Y., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aad7121 · Cited by 1,469 · see citing works

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

Vatanen, T., Kostic, A. D., d’Hennezel, E., Siljander, H., Franzosa, E. A., Yassour, M., Kolde, R., Vlamakis, H., Arthur, T. D., Hämäläinen, A.-M., et al. (2016) · Cell · doi:10.1016/j.cell.2016.04.007 · Cited by 1,289 · see citing works

Lactate metabolism: a new paradigm for the third millennium

Gladden, L. B. (2004) · The Journal of Physiology · doi:10.1113/jphysiol.2003.058701 · Cited by 1,283 · see citing works

Persistent gut microbiota immaturity in malnourished Bangladeshi children

Subramanian, S., Huq, S., Yatsunenko, T., Haque, R., Mahfuz, M., Alam, M. A., Benezra, A., DeStefano, J., Meier, M. F., Muegge, B. D., et al. (2014) · Nature · doi:10.1038/nature13421 · Cited by 1,270 · see citing works

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

Yassour, M., Vatanen, T., Siljander, H., Hämäläinen, A.-M., Härkönen, T., Ryhänen, S. J., Franzosa, E. A., Vlamakis, H., Huttenhower, C., Gevers, D., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aad0917 · Cited by 1,043 · see citing works

Screening of Probiotic Activities of Forty-Seven Strains of Lactobacillus spp. by In Vitro Techniques and Evaluation of the Colonization Ability of Five Selected Strains in Humans

Jacobsen, C. N., Nielsen, V. R., Hayford, A. E., Møller, P. L., Michaelsen, K. F., Pærregaard, A., Sandström, B., Tvede, M., & Jakobsen, M. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.11.4949-4956.1999 · Cited by 880 · see citing works

Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella

Rivera-Chávez, F., Zhang, L. F., Faber, F., Lopez, C. A., Byndloss, M. X., Olsan, E. E., Xu, G., Velazquez, E. M., Lebrilla, C. B., Winter, S. E., et al. (2016) · Cell Host & Microbe · doi:10.1016/j.chom.2016.03.004 · Cited by 864 · see citing works

Carbohydrate metabolism in Bifidobacteria

Pokusaeva, K., Fitzgerald, G. F., & van Sinderen, D. (2011) · Genes & Nutrition · doi:10.1007/s12263-010-0206-6 · Cited by 855 · see citing works

Analysis of the Fecal Microbiota of Irritable Bowel Syndrome Patients and Healthy Controls with Real-Time PCR

Malinen, E., Rinttila, T., Kajander, K., Matto, J., Kassinen, A., Krogius, L., Saarela, M., Korpela, R., & Palva, A. (2005) · The American Journal of Gastroenterology · doi:10.1111/j.1572-0241.2005.40312.x · Cited by 699 · see citing works

Human milk glycobiome and its impact on the infant gastrointestinal microbiota

Zivkovic, A. M., German, J. B., Lebrilla, C. B., & Mills, D. A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000083107 · Cited by 679 · see citing works

Molecular characterization of a membrane transporter for lactate, pyruvate, and other monocarboxylates: Implications for the Cori cycle

Garcia, C. K., Goldstein, J. L., Pathak, R., Anderson, R. G. W., & Brown, M. S. (1994) · Cell · doi:10.1016/0092-8674(94)90361-1 · Cited by 588 · see citing works

Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways

Marcobal, A., Barboza, M., Sonnenburg, E. D., Pudlo, N., Martens, E. C., Desai, P., Lebrilla, C. B., Weimer, B. C., Mills, D. A., German, J. B., et al. (2011) · Cell Host & Microbe · doi:10.1016/j.chom.2011.10.007 · Cited by 574 · see citing works

Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome

Maldonado-Gómez, M. X., Martínez, I., Bottacini, F., O’Callaghan, A., Ventura, M., van Sinderen, D., Hillmann, B., Vangay, P., Knights, D., Hutkins, R. W., et al. (2016) · Cell Host & Microbe · doi:10.1016/j.chom.2016.09.001 · Cited by 517 · see citing works

The functional biology of human milk oligosaccharides

Bode, L. (2015) · Early Human Development · doi:10.1016/j.earlhumdev.2015.09.001 · Cited by 483 · see citing works

Bifidobacterium longum subspecies infantis: champion colonizer of the infant gut

Underwood, M. A., German, J. B., Lebrilla, C. B., & Mills, D. A. (2015) · Pediatric Research · doi:10.1038/pr.2014.156 · Cited by 439 · see citing works

Mechanisms controlling pathogen colonization of the gut

Stecher, B., & Hardt, W. (2010) · Current Opinion in Microbiology · doi:10.1016/j.mib.2010.10.003 · Cited by 415 · see citing works

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants

Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popović, M., Parker, E. A., Lemay, D. G., Tassell, M. L. V., Miller, M. J., Jin, Y., German, J. B., et al. (2015) · Microbiome · doi:10.1186/s40168-015-0071-z · Cited by 412 · see citing works

Stool microbiota and vaccine responses of infants

Huda, M. N., Lewis, Z., Kalanetra, K. M., Rashid, M., Ahmad, S. M., Raqib, R., Qadri, F., Underwood, M. A., Mills, D. A., & Stephensen, C. B. (2014) · PEDIATRICS · doi:10.1542/peds.2013-3937 · Cited by 392 · see citing works

Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR

Penders, J., Vink, C., Driessen, C., London, N. H. H. J., Thijs, C. T., & Stobberingh, E. E. (2004) · FEMS Microbiology Letters · doi:10.1016/j.femsle.2004.11.052 · Cited by 380 · see citing works

Mother-to-Infant Transmission of Intestinal Bifidobacterial Strains Has an Impact on the Early Development of Vaginally Delivered Infant's Microbiota

Makino, H., Kushiro, A., Ishikawa, E., Kubota, H., Gawad, A., Sakai, T., Oishi, K., Martı́n, R., Amor, K. B., Knol, J., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0078331 · Cited by 304 · see citing works

Bifidobacteria isolated from infants and cultured on human milk oligosaccharides affect intestinal epithelial function

Chichlowski, M., De Lartigue, G., German, J. B., Raybould, H. E., & Mills, D. A. (2012) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0b013e31824fb899 · Cited by 276 · see citing works

Broad Conservation of Milk Utilization Genes in<i>Bifidobacterium longum</i>subsp.<i>infantis</i>as Revealed by Comparative Genomic Hybridization

LoCascio, R. G., Desai, P., Sela, D. A., Weimer, B., & Mills, D. A. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00675-10 · Cited by 229 · see citing works

Oligosaccharides in Human Milk and Bacterial Colonization

Newburg, D. S. (2000) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/00005176-200000002-00003 · Cited by 212 · see citing works

Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria

Garrido, D. A., Ruiz‐Moyano, S., Lemay, D. G., Sela, D. A., German, J. B., & Mills, D. A. (2015) · Scientific Reports · doi:10.1038/srep13517 · Cited by 189 · see citing works

Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides and Infant Gut Microbiota

Davis, J. C. C., Lewis, Z. T., Krishnan, S., Bernstein, R. M., Moore, S. E., Prentice, A. M., Mills, D. A., Lebrilla, C. B., & Zivkovic, A. M. (2017) · Scientific Reports · doi:10.1038/srep40466 · Cited by 187 · see citing works

The importance of appropriate initial bacterial colonization of the intestine in newborn, child, and adult health

Walker, W. A. (2017) · Pediatric Research · doi:10.1038/pr.2017.111 · Cited by 169 · see citing works

Distinct Gut Microbiota in Southeastern African and Northern European Infants

Grześkowiak, Ł., Collado, M. C., Mangani, C., Maleta, K. M., Laitinen, K., Ashorn, P., Isolauri, E., & Salminen, S. (2012) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0b013e318249039c · Cited by 163 · see citing works

Validating bifidobacterial species and subspecies identity in commercial probiotic products

Lewis, Z. T., Shani, G., Masarweh, C. F., Popovic, M., Frese, S. A., Sela, D. A., Underwood, M. A., & Mills, D. A. (2016) · Pediatric Research · doi:10.1038/pr.2015.244 · Cited by 154 · see citing works

Oligosaccharides in Human Milk and Bacterial Colonization

Newburg, D. S. (2000) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/00005176-200003002-00003 · Cited by 143 · see citing works

Occurrence of oligosaccharides in feces of breast-fed babies in their first six months of life and the corresponding breast milk

Albrecht, S., Schols, H. A., van den Heuvel, E. G. H. M., Voragen, A. G. J., & Gruppen, H. (2011) · Carbohydrate Research · doi:10.1016/j.carres.2011.08.009 · Cited by 114 · see citing works

Identification of Oligosaccharides in Feces of Breast-fed Infants and Their Correlation with the Gut Microbial Community

Davis, J. C. C., Totten, S. M., Huang, J., Nagshbandi, S., Kirmiz, N., Garrido, D. A., Lewis, Z. T., Wu, L. D., Smilowitz, J. T., German, J. B., et al. (2016) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m116.060665 · Cited by 100 · see citing works

Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol

Milani, C., Lugli, G. A., Turroni, F., Mancabelli, L., Duranti, S., Viappiani, A., Mangifesta, M., Segata, N., van Sinderen, D., & Ventura, M. (2014) · FEMS Microbiology Ecology · doi:10.1111/1574-6941.12410 · Cited by 88 · see citing works

Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells

Wickramasinghe, S., Pacheco, A. R., Lemay, D. G., & Mills, D. A. (2015) · BMC Microbiology · doi:10.1186/s12866-015-0508-3 · Cited by 86 · see citing works

Bifidobacterium infantis suppresses proinflammatory interleukin-17 production in murine splenocytes and dextran sodium sulfate-induced intestinal inflammation

Tanabe, S. (1998) · International Journal of Molecular Medicine · doi:10.3892/ijmm_00000006 · Cited by 76 · see citing works

Safety and tolerability of Bifidobacterium longum subspecies infantis EVC001 supplementation in healthy term breastfed infants: a phase I clinical trial

Smilowitz, J. T., Moya, J. J., Breck, M. A., Cook, C., Fineberg, A. E., Angkustsiri, K., & Underwood, M. A. (2017) · BMC Pediatrics · doi:10.1186/s12887-017-0886-9 · Cited by 71 · see citing works

Effects of Feeding an Infant Formula Containing Lactobacillus GG on the Colonization of the Intestine

Petschow, B. W., Figueroa, R., Harris, C. L., Beck, L. B., Ziegler, E., & Goldin, B. R. (2005) · Journal of Clinical Gastroenterology · doi:10.1097/01.mcg.0000177245.53753.86 · Cited by 53 · see citing works

Safety and Immunomodulatory Effects of Three Probiotic Strains Isolated from the Feces of Breast-Fed Infants in Healthy Adults: SETOPROB Study

Plaza-Diaz, J., Gomez-Llorente, C., Campaña-Martin, L., Matencio, E., Ortuño, I., Martínez-Silla, R., Gomez-Gallego, C., Periago, M. J., Ros, G., Chenoll, E., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0078111 · Cited by 44 · see citing works

The Fecal Microbial Community of Breast-fed Infants from Armenia and Georgia

Lewis, Z. T., Sidamonidze, K., Tsaturyan, V. V., Tsereteli, D., Khachidze, N., Pepoyan, A., Zhgenti, E., Tevzadze, L., Manvelyan, A., Balayan, M. H., et al. (2017) · Scientific Reports · doi:10.1038/srep40932 · Cited by 30 · see citing works

Erratum: Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria

Garrido, D. A., Ruiz‐Moyano, S., Lemay, D. G., Sela, D. A., German, J. B., & Mills, D. A. (2015) · Scientific Reports · doi:10.1038/srep15311 · Cited by 25 · see citing works

Impact of maternal bifidobacteria and the mode of delivery on Bifidobacterium microbiota in infants

Sirilun, S., Takahashi, H., Boonyaritichaikij, S., Chaiyasut, C., Lertruangpanya, P., Koga, Y., & Mikami, K. (2015) · Beneficial Microbes · doi:10.3920/bm2014.0124 · Cited by 20 · see citing works

Probiotics and Innate and Adaptive Immune Responses in Premature Infants

Underwood, M. A. (2016) · Forum on Immunopathological Diseases and Therapeutics · doi:10.1615/forumimmundisther.2016018178 · Cited by 12 · see citing works

Short-term and long-term effects of caesarean section on the health of women and children

Sandall, J., Tribe, R. M., Avery, L., Mola, G., Visser, G. H., Homer, C. S., Gibbons, D., Kelly, N. M., Kennedy, H. P., Kidanto, H., et al. (2018) · The Lancet · doi:10.1016/s0140-6736(18)31930-5 · Cited by 1,394 · see citing works

Bifidobacteria-mediated immune system imprinting early in life

Henrick, B. M., Rodriguez, L., Lakshmikanth, T., Pou, C., Henckel, E., Arzoomand, A., Olin, A., Wang, J., Mikeš, J., Tan, Z., et al. (2021) · Cell · doi:10.1016/j.cell.2021.05.030 · Cited by 808 · see citing works

Bifidobacterium species associated with breastfeeding produce aromatic lactic acids in the infant gut

Laursen, M. F., Sakanaka, M., von Burg, N., Mörbe, U., Andersen, D., Moll, J. M., Pekmez, C. T., Rivollier, A., Michaelsen, K. F., Mølgaard, C., et al. (2021) · Nature Microbiology · doi:10.1038/s41564-021-00970-4 · Cited by 596 · see citing works

Emerging issues in probiotic safety: 2023 perspectives

Merenstein, D., Pot, B., Leyer, G., Ouwehand, A. C., Preidis, G. A., Elkins, C. A., Hill, C., Lewis, Z. T., Shane, A. L., Zmora, N., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2185034 · Cited by 481 · see citing works

Indole-3-lactic acid associated with Bifidobacterium-dominated microbiota significantly decreases inflammation in intestinal epithelial cells

Ehrlich, A. M., Pacheco, A. R., Henrick, B. M., Taft, D. H., Xu, G., Huda, M. N., Mishchuk, D. O., Goodson, M. L., Slupsky, C. M., Barile, D., et al. (2020) · BMC Microbiology · doi:10.1186/s12866-020-02023-y · Cited by 314 · see citing works

Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life

Vatanen, T., Plichta, D. R., Somani, J., Münch, P. C., Arthur, T. D., Hall, A. B., Rudolf, S., Oakeley, E. J., Ke, X., Young, R. A., et al. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0321-5 · Cited by 216 · see citing works

Human Milk: An Ideal Food for Nutrition of Preterm Newborn

Boquien, C. (2018) · Frontiers in Pediatrics · doi:10.3389/fped.2018.00295 · Cited by 220 · see citing works

Varied Pathways of Infant Gut-Associated Bifidobacterium to Assimilate Human Milk Oligosaccharides: Prevalence of the Gene Set and Its Correlation with Bifidobacteria-Rich Microbiota Formation

Sakanaka, M., Gotoh, A., Yoshida, K., Odamaki, T., Koguchi, H., Xiao, J., Kitaoka, M., & Katayama, T. (2019) · Nutrients · doi:10.3390/nu12010071 · Cited by 215 · see citing works

Solutions in microbiome engineering: prioritizing barriers to organism establishment

Albright, M., Louca, S., Winkler, D. E., Feeser, K. L., Haig, S., Whiteson, K., Emerson, J., & Dunbar, J. (2021) · The ISME Journal · doi:10.1038/s41396-021-01088-5 · Cited by 192 · see citing works

Supplementation with a probiotic mixture accelerates gut microbiome maturation and reduces intestinal inflammation in extremely preterm infants

Samara, J., Moossavi, S., Alshaikh, B., Ortega, V. A., Pettersen, V. K., Ferdous, T., Hoops, S. L., Soraisham, A., Vayalumkal, J., Dersch-Mills, D., et al. (2022) · Cell Host &amp; Microbe · doi:10.1016/j.chom.2022.04.005 · Cited by 191 · see citing works

Use of Probiotics in Preterm Infants

Poindexter, B., COMMITTEE ON FETUS AND NEWBORN, Cummings, J., Hand, I., Adams-Chapman, I., Aucott, S. W., Puopolo, K. M., Goldsmith, J. P., Kaufman, D., Martin, C., et al. (2021) · Pediatrics · doi:10.1542/peds.2021-051485 · Cited by 171 · see citing works

Malnutrition and Gut Microbiota in Children

Iddrisu, I., Monteagudo-Mera, A., Poveda, C. G., Pyle, S., Shahzad, M. A., Andrews, S. C., & Walton, G. (2021) · Nutrients · doi:10.3390/nu13082727 · Cited by 170 · see citing works

Intestinal and fecal pH in human health

Yamamura, R., Inoue, K. Y., Nishino, K., & Yamasaki, S. (2023) · Frontiers in Microbiomes · doi:10.3389/frmbi.2023.1192316 · Cited by 172 · see citing works

The Role of Gut Microbiota and Environmental Factors in Type 1 Diabetes Pathogenesis

Dedrick, S., Sundaresh, B., Huang, Q., Brady, C., Yoo, T., Cronin, C. T., Rudnicki, C., Flood, M., Momeni, B., Ludvigsson, J., et al. (2020) · Frontiers in Endocrinology · doi:10.3389/fendo.2020.00078 · Cited by 164 · see citing works

Elevated Fecal pH Indicates a Profound Change in the Breastfed Infant Gut Microbiome Due to Reduction of Bifidobacterium over the Past Century

Henrick, B. M., Hutton, A. A., Palumbo, M., Casaburi, G., Mitchell, R. D., Underwood, M. A., Smilowitz, J. T., & Frese, S. A. (2018) · mSphere · doi:10.1128/msphere.00041-18 · Cited by 157 · see citing works

Bifidobacterium Abundance in Early Infancy and Vaccine Response at 2 Years of Age

Huda, M. N., Ahmad, S. M., Alam, J., Khanam, A., Kalanetra, K. M., Taft, D. H., Raqib, R., Underwood, M. A., Mills, D. A., & Stephensen, C. B. (2019) · PEDIATRICS · doi:10.1542/peds.2018-1489 · Cited by 156 · see citing works

The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis

Wandro, S., Osborne, S., Enriquez, C., Bixby, C., Arrieta, A. C., & Whiteson, K. (2018) · mSphere · doi:10.1128/msphere.00104-18 · Cited by 149 · see citing works

Clinical implications of preterm infant gut microbiome development

Healy, D., Ryan, C. A., Ross, R. P., Stanton, C., & Dempsey, E. M. (2021) · Nature Microbiology · doi:10.1038/s41564-021-01025-4 · Cited by 132 · see citing works

Early‐Life Gut Microbiome—The Importance of Maternal and Infant Factors in Its Establishment

Kapourchali, F. R., & Cresci, G. (2020) · Nutrition in Clinical Practice · doi:10.1002/ncp.10490 · Cited by 133 · see citing works

Gut Microbiota Development: Influence of Diet from Infancy to Toddlerhood

Laursen, M. F. (2021) · Annals of Nutrition and Metabolism · doi:10.1159/000517912 · Cited by 131 · see citing works

Current explorations of nutrition and the gut microbiome: a comprehensive evaluation of the review literature

Frame, L. A., Costa, E., & Jackson, S. A. (2019) · Nutrition Reviews · doi:10.1093/nutrit/nuz106 · Cited by 127 · see citing works

Bifidobacterium longum Subspecies infantis (B. infantis) in Pediatric Nutrition: Current State of Knowledge

Chichlowski, M., Shah, N., Wampler, J. L., Wu, S. S., & Vanderhoof, J. A. (2020) · Nutrients · doi:10.3390/nu12061581 · Cited by 122 · see citing works

Colonization by B. infantis EVC001 modulates enteric inflammation in exclusively breastfed infants

Henrick, B. M., Chew, S., Casaburi, G., Brown, H. K., Frese, S. A., Zhou, Y., Underwood, M. A., & Smilowitz, J. T. (2019) · Pediatric Research · doi:10.1038/s41390-019-0533-2 · Cited by 117 · see citing works

Mother–infant transmission of human microbiota

Browne, H. P., Shao, Y., & Lawley, T. D. (2022) · Current Opinion in Microbiology · doi:10.1016/j.mib.2022.102173 · Cited by 112 · see citing works

Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond

Lordan, C., Roche, A. K., Delsing, D. J. M., Nauta, A., Groeneveld, A., MacSharry, J. A., Cotter, P. D., & van Sinderen, D. (2024) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00094-23 · Cited by 109 · see citing works

Bifidobacterial Dominance of the Gut in Early Life and Acquisition of Antimicrobial Resistance

Taft, D. H., Liu, J., Maldonado-Gómez, M. X., Akre, S., Huda, M. N., Ahmad, S. M., Stephensen, C. B., & Mills, D. A. (2018) · mSphere · doi:10.1128/msphere.00441-18 · Cited by 107 · see citing works

Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial

He, X., Parenti, M., Grip, T., Lönnerdal, B. L., Timby, N., Domellöf, M., Hernell, O., & Slupsky, C. M. (2019) · Scientific Reports · doi:10.1038/s41598-019-47953-4 · Cited by 103 · see citing works

The gut microbiome and dietary fibres: implications in obesity, cardiometabolic diseases and cancer

Delzenne, N. M., Bindels, L. B., Neyrinck, A. M., & Walter, J. (2024) · Nature Reviews Microbiology · doi:10.1038/s41579-024-01108-z · Cited by 105 · see citing works

Role of the gut microbiota in nutrient competition and protection against intestinal pathogen colonization

Horrocks, V., King, O. G., Yip, A. Y. G., Marques, I. M., & McDonald, J. A. K. (2023) · Microbiology · doi:10.1099/mic.0.001377 · Cited by 104 · see citing works

Incidence of necrotising enterocolitis before and after introducing routine prophylactic Lactobacillus and Bifidobacterium probiotics

Robertson, C., Savva, G. M., Clapuci, R., Jones, J. E., Maimouni, H., Brown, E., Minocha, A., Hall, L. J., & Clarke, P. (2019) · Archives of Disease in Childhood Fetal & Neonatal · doi:10.1136/archdischild-2019-317346 · Cited by 102 · see citing works

Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria

Casaburi, G., Duar, R. M., Vance, D. P., Mitchell, R., Contreras, L., Frese, S. A., Smilowitz, J. T., & Underwood, M. A. (2019) · Antimicrobial Resistance &amp; Infection Control · doi:10.1186/s13756-019-0583-6 · Cited by 101 · see citing works

Nurturing the Early Life Gut Microbiome and Immune Maturation for Long Term Health

Dogra, S. K., Chung, C. K. C. K., Wang, D., Sakwińska, O., Mottaz, S. C., & Sprenger, N. (2021) · Microorganisms · doi:10.3390/microorganisms9102110 · Cited by 104 · see citing works

Microbial Colonization From the Fetus to Early Childhood—A Comprehensive Review

Senn, V., Bassler, D., Choudhury, R. A., Scholkmann, F., Righini‐Grunder, F., Vuille-dit-Bille, R. N., & Restin, T. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.573735 · Cited by 97 · see citing works

Untangling human milk oligosaccharides and infant gut microbiome

Masi, A. C., & Stewart, C. J. (2021) · iScience · doi:10.1016/j.isci.2021.103542 · Cited by 94 · see citing works

Intestinal pH: a major driver of human gut microbiota composition and metabolism

Brinck, J. E., Sinha, A. K., Laursen, M. F., Dragsted, L. O., Raes, J., Vazquez-Uribe, R., Walter, J., Roager, H. M., & Licht, T. R. (2025) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-025-01092-6 · Cited by 100 · see citing works

Parturition and the perinatal period: can mode of delivery impact on the future health of the neonate?

Tribe, R. M., Taylor, P. D., Kelly, N., Rees, D., Sandall, J., & Kennedy, H. P. (2018) · The Journal of Physiology · doi:10.1113/jp275429 · Cited by 93 · see citing works

Mining Lactobacillus and Bifidobacterium for organisms with long-term gut colonization potential

Xiao, Y., Zhao, J., Zhang, H., Zhai, Q., & Chen, W. (2019) · Clinical Nutrition · doi:10.1016/j.clnu.2019.05.014 · Cited by 91 · see citing works

The honey bee gut microbiota: strategies for study and characterization

Romero, S., Nastasa, A., Chapman, A., Kwong, W. K., & Foster, L. J. (2019) · Insect Molecular Biology · doi:10.1111/imb.12567 · Cited by 88 · see citing works

Maternal milk microbiota and oligosaccharides contribute to the infant gut microbiota assembly

Laursen, M. F., Pekmez, C. T., Larsson, M. W., Lind, M. V., Yonemitsu, C., Larnkjær, A., Mølgaard, C., Bode, L., Dragsted, L. O., Michaelsen, K. F., et al. (2021) · ISME Communications · doi:10.1038/s43705-021-00021-3 · Cited by 93 · see citing works

The Role of Diet and Nutritional Interventions for the Infant Gut Microbiome

Catassi, G. N., Aloi, M., Giorgio, V., Gasbarrini, A., Cammarota, G., & Ianiro, G. (2024) · Nutrients · doi:10.3390/nu16030400 · Cited by 88 · see citing works

Dosing a synbiotic of human milk oligosaccharides and B. infantis leads to reversible engraftment in healthy adult microbiomes without antibiotics

Button, J. E., Autran, C. A., Reens, A. L., Cosetta, C. M., Smriga, S., Ericson, M. E., Pierce, J. V., Cook, D. N., Lee, M. L., Sun, A. K., et al. (2022) · Cell Host & Microbe · doi:10.1016/j.chom.2022.04.001 · Cited by 85 · see citing works

Intestinal ‘Infant-Type’ Bifidobacteria Mediate Immune System Development in the First 1000 Days of Life

Lin, C., Lin, Y., Zhang, H., Wang, G., Zhao, J., Zhang, H., & Chen, W. (2022) · Nutrients · doi:10.3390/nu14071498 · Cited by 85 · see citing works

Neonatal intestinal dysbiosis

Underwood, M. A., Mukhopadhyay, S., Lakshminrusimha, S., & Bevins, C. L. (2020) · Journal of Perinatology · doi:10.1038/s41372-020-00829-2 · Cited by 81 · see citing works

Infant gut microbiome is enriched with Bifidobacterium longum ssp. infantis in Old Order Mennonites with traditional farming lifestyle

Seppo, A., Bu, K., Jumabaeva, M., Thakar, J., Choudhury, R. A., Yonemitsu, C., Bode, L., Martina, C. A., Allen, M., Tamburini, S., et al. (2021) · Allergy · doi:10.1111/all.14877 · Cited by 78 · see citing works

Metagenomic insights of the infant microbiome community structure and function across multiple sites in the United States

Casaburi, G., Duar, R. M., Brown, H. K., Mitchell, R. D., Kazi, S., Chew, S., Cagney, O., Flannery, R. L., Sylvester, K. G., Frese, S. A., et al. (2021) · Scientific Reports · doi:10.1038/s41598-020-80583-9 · Cited by 75 · see citing works

Understanding mode of action can drive the translational pipeline towards more reliable health benefits for probiotics

Kleerebezem, M., Binda, S., Bron, P. A., Gross, G., Hill, C., Vlieg, J. E. V. H., Lebeer, S., Satokari, R. M., & Ouwehand, A. C. (2018) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2018.09.007 · Cited by 73 · see citing works

Comparative Genome Analysis of Bifidobacterium longum subsp. infantis Strains Reveals Variation in Human Milk Oligosaccharide Utilization Genes among Commercial Probiotics

Duar, R. M., Casaburi, G., Mitchell, R. D., Scofield, L. N. C., Ramírez, C. A. O., Barile, D., Henrick, B. M., & Frese, S. A. (2020) · Nutrients · doi:10.3390/nu12113247 · Cited by 70 · see citing works

Colonization Resistance in the Infant Gut: The Role of B. infantis in Reducing pH and Preventing Pathogen Growth

Duar, R. M., Kyle, D., & Casaburi, G. (2020) · High-Throughput · doi:10.3390/ht9020007 · Cited by 70 · see citing works

Novel Genes and Metabolite Trends in Bifidobacterium longum subsp. infantis Bi-26 Metabolism of Human Milk Oligosaccharide 2′-fucosyllactose

Zabel, B., Yde, C. C., Roos, P., Marcussen, J., Jensen, H. M., Salli, K. M., Hirvonen, J., Ouwehand, A. C., & Morovic, W. (2019) · Scientific Reports · doi:10.1038/s41598-019-43780-9 · Cited by 69 · see citing works

The Impact of Probiotics, Prebiotics, and Synbiotics during Pregnancy or Lactation on the Intestinal Microbiota of Children Born by Cesarean Section: A Systematic Review

Martín‐Peláez, S., Ibáñez, N. C., Pinto-Gallardo, M., & Amezcua‐Prieto, C. (2022) · Nutrients · doi:10.3390/nu14020341 · Cited by 68 · see citing works

Early life gut microbiome and its impact on childhood health and chronic conditions

Núñez, H., Nieto, P. A., Mars, R. A. T., Ghavami, M., Hoy, C. S., & Sukhum, K. V. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2463567 · Cited by 74 · see citing works

Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease

Rhoades, N. S., Barr, T., Hendrickson, S. M., Prongay, K., Haertel, A. J., Gill, L., Garzel, L. M., Whiteson, K., Slifka, M. K., & Messaoudi, I. (2019) · Genome biology · doi:10.1186/s13059-019-1789-x · Cited by 66 · see citing works

Factors Influencing the Intestinal Microbiome During the First Year of Life

Zimmermann, P., & Curtis, N. C. (2018) · The Pediatric Infectious Disease Journal · doi:10.1097/inf.0000000000002103 · Cited by 68 · see citing works

Early probiotic supplementation with B. infantis in breastfed infants leads to persistent colonization at 1 year

O’Brien, C. E., Meier, A., Cernioglo, K., Mitchell, R. D., Casaburi, G., Frese, S. A., Henrick, B. M., Underwood, M. A., & Smilowitz, J. T. (2021) · Pediatric Research · doi:10.1038/s41390-020-01350-0 · Cited by 66 · see citing works

Human milk oligosaccharides modify the strength of priority effects in the Bifidobacterium community assembly during infancy

Laursen, M. F., & Roager, H. M. (2023) · The ISME Journal · doi:10.1038/s41396-023-01525-7 · Cited by 63 · see citing works

Breastfeeding Behaviors and the Innate Immune System of Human Milk: Working Together to Protect Infants against Inflammation, HIV-1, and Other Infections

Henrick, B. M., Yao, X.-D., Nasser, L., Roozrogousheh, A., & Rosenthal, K. L. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01631 · Cited by 84 · see citing works

Impact of Probiotic B. infantis EVC001 Feeding in Premature Infants on the Gut Microbiome, Nosocomially Acquired Antibiotic Resistance, and Enteric Inflammation

Nguyen, M., Holdbrooks, H., Mishra, P. K., Abrantes, M. A., Eskew, S., Garma, M., Oca, C.-G., McGuckin, C., Hein, C. T., Mitchell, R. D., et al. (2021) · Frontiers in Pediatrics · doi:10.3389/fped.2021.618009 · Cited by 61 · see citing works

Ingestion, Immunity, and Infection: Nutrition and Viral Respiratory Tract Infections

Govers, C., Calder, P. C., Savelkoul, H. F. J., Albers, R., & van Neerven, R. J. J. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.841532 · Cited by 66 · see citing works

Goals in Nutrition Science 2020-2025

Bassaganya-Riera, J., Berry, E. M., Blaak, E. E., Burlingame, B., le Coutre, J., van Eden, W., El‐Sohemy, A., German, J. B., Knorr, D., Lacroix, C., et al. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2020.606378 · Cited by 65 · see citing works

Safety and efficacy of a probiotic-containing infant formula supplemented with 2’-fucosyllactose: a double-blind randomized controlled trial

Alliet, P., Vandenplas, Y., Roggero, P., Jespers, S. N. J., Peeters, S., Stalens, J., Kortman, G. A. M., Amico, M., Berger, B. W., Sprenger, N., et al. (2022) · Nutrition Journal · doi:10.1186/s12937-022-00764-2 · Cited by 57 · see citing works

Reduced colonic mucin degradation in breastfed infants colonized by Bifidobacterium longum subsp. infantis EVC001

Karav, S., Casaburi, G., & Frese, S. A. (2018) · FEBS Open Bio · doi:10.1002/2211-5463.12516 · Cited by 57 · see citing works

Probiotics in the New Era of Human Milk Oligosaccharides (HMOs): HMO Utilization and Beneficial Effects of Bifidobacterium longum subsp. infantis M-63 on Infant Health

Wong, C. B., Huang, H., Ning, Y., & Xiao, J. (2024) · Microorganisms · doi:10.3390/microorganisms12051014 · Cited by 56 · see citing works

Human Milk Oligosaccharides and Bacterial Profile Modulate Infant Body Composition during Exclusive Breastfeeding

Cheema, A. S., Gridneva, Z., Fürst, A., Roman, A. S., Trevenen, M., Turlach, B. A., Lai, C. T., Stinson, L. F., Bode, L., Payne, M. S., et al. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23052865 · Cited by 53 · see citing works

Integrating the Ecosystem Services Framework to Define Dysbiosis of the Breastfed Infant Gut: The Role of B. infantis and Human Milk Oligosaccharides

Duar, R. M., Henrick, B. M., Casaburi, G., & Frese, S. A. (2020) · Frontiers in Nutrition · doi:10.3389/fnut.2020.00033 · Cited by 50 · see citing works

Bifidobacterium catabolism of human milk oligosaccharides overrides endogenous competitive exclusion driving colonization and protection

Heiss, B. E., Ehrlich, A. M., Maldonado-Gómez, M. X., Taft, D. H., Larke, J. A., Goodson, M. L., Slupsky, C. M., Tancredi, D. J., Raybould, H. E., & Mills, D. A. (2021) · Gut Microbes · doi:10.1080/19490976.2021.1986666 · Cited by 50 · see citing works

Early Probiotic Supplementation of Healthy Term Infants with Bifidobacterium longum subsp. infantis M-63 Is Safe and Leads to the Development of Bifidobacterium-Predominant Gut Microbiota: A Double-Blind, Placebo-Controlled Trial

Hiraku, A., Nakata, S., Murata, M., Xu, C., Mutoh, N., Arai, S., Odamaki, T., Iwabuchi, N., Tanaka, M., Tsuno, T., et al. (2023) · Nutrients · doi:10.3390/nu15061402 · Cited by 49 · see citing works

Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria

Arzamasov, A. A., Rodionov, D. A., Hibberd, M. C., Guruge, J. L., Kent, J. E., Kazanov, M. D., Leyn, S. A., Elane, M. L., Sejane, K., Fürst, A., et al. (2025) · Nature Microbiology · doi:10.1038/s41564-025-02056-x · Cited by 49 · see citing works

Precision modulation of dysbiotic adult microbiomes with a human-milk-derived synbiotic reshapes gut microbial composition and metabolites

Button, J. E., Cosetta, C. M., Reens, A. L., Brooker, S. L., Rowan-Nash, A. D., Lavin, R., Saur, R., Zheng, S., Autran, C. A., Lee, M. L., et al. (2023) · Cell Host & Microbe · doi:10.1016/j.chom.2023.08.004 · Cited by 48 · see citing works

Ecological and molecular perspectives on responders and non-responders to probiotics and prebiotics

Ojima, M. N., Yoshida, K., Sakanaka, M., Jiang, L., Odamaki, T., & Katayama, T. (2022) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2021.06.023 · Cited by 46 · see citing works

Early development of infant gut microbiota in relation to breastfeeding and human milk oligosaccharides

Chichlowski, M., van Diepen, J. A., Prodan, A., Olga, L., Ong, K. K., Kortman, G. A. M., Dunger, D. B., & Gross, G. (2023) · Frontiers in Nutrition · doi:10.3389/fnut.2023.1003032 · Cited by 45 · see citing works

A bacterial sialidase mediates early-life colonization by a pioneering gut commensal

Buzun, E., Hsu, C.-Y., Sejane, K., Oles, R. E., Ayala, A. V., Loomis, L. R., Zhao, J., Rossitto, L.-A. M., McGrosso, D., Gonzalez, D. J., et al. (2024) · Cell Host & Microbe · doi:10.1016/j.chom.2023.12.014 · Cited by 42 · see citing works

Gut Microbiota Profile in Children with IgE-Mediated Cow’s Milk Allergy and Cow’s Milk Sensitization and Probiotic Intestinal Persistence Evaluation

Mennini, M., Reddel, S., CHIERICO, F. D., Gardini, S., Quagliariello, A., Vernocchi, P., Valluzzi, R. L., Fierro, V., Riccardi, C., Napolitano, T., et al. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22041649 · Cited by 44 · see citing works

Bifidobacterium infantis as a probiotic in preterm infants: a systematic review and meta-analysis

Batta, V., Rao, S. C., & Patole, S. (2023) · Pediatric Research · doi:10.1038/s41390-023-02716-w · Cited by 43 · see citing works

Human Milk Oligosaccharides: Decoding Their Structural Variability, Health Benefits, and the Evolution of Infant Nutrition

Duman, H., Bechelany, M., & Karav, S. (2024) · Nutrients · doi:10.3390/nu17010118 · Cited by 46 · see citing works

Prospects for primary prevention of type 1 diabetes by restoring a disappearing microbe

Insel, R. A., & Knip, M. (2018) · Pediatric Diabetes · doi:10.1111/pedi.12756 · Cited by 43 · see citing works

Galacto- and Fructo-oligosaccharides Utilized for Growth by Cocultures of Bifidobacterial Species Characteristic of the Infant Gut

Sims, I. M., & Tannock, G. W. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.00214-20 · Cited by 43 · see citing works

Bifidobacterium longum subsp. infantis EVC001 Administration Is Associated with a Significant Reduction in the Incidence of Necrotizing Enterocolitis in Very Low Birth Weight Infants

Tobias, J. D., Olyaei, A. F., Laraway, B. J., Jordan, B. K., Dickinson, S., Golzarri‐Arroyo, L., Fialkowski, E., Owora, A. H., & Scottoline, B. P. (2022) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2021.12.070 · Cited by 43 · see citing works

Inulin Fermentation by Lactobacilli and Bifidobacteria from Dairy Calves

Zhu, Y., Liu, J., Lopez, J. M., & Mills, D. A. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.01738-20 · Cited by 40 · see citing works

Human milk oligosaccharides combine with Bifidobacterium longum to form the “golden shield” of the infant intestine: metabolic strategies, health effects, and mechanisms of action

Yang, S., Cai, J., Su, Q., Li, Q., & Meng, X. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2430418 · Cited by 39 · see citing works

Translating neonatal microbiome science into commercial innovation: metabolism of human milk oligosaccharides as a basis for probiotic efficacy in breast-fed infants

Mills, D. A., German, J. B., Lebrilla, C. B., & Underwood, M. A. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2192458 · Cited by 38 · see citing works

Colonization of breastfed infants by Bifidobacterium longum subsp. infantis EVC001 reduces virulence gene abundance

Casaburi, G., & Frese, S. A. (2018) · Human Microbiome Journal · doi:10.1016/j.humic.2018.05.001 · Cited by 38 · see citing works

Lactate Metabolism Is Strongly Modulated by Fecal Inoculum, pH, and Retention Time in PolyFermS Continuous Colonic Fermentation Models Mimicking Young Infant Proximal Colon

Pham, V. T., Chassard, C., Rifa, É., Braegger, C., Geirnaert, A., Martin, V. N. R., & Lacroix, C. (2019) · mSystems · doi:10.1128/msystems.00264-18 · Cited by 38 · see citing works

Emerging role of Gut-microbiota-brain axis in depression and therapeutic implication

Evrensel, A., & Tarhan, N. (2020) · Progress in Neuro-Psychopharmacology and Biological Psychiatry · doi:10.1016/j.pnpbp.2020.110138 · Cited by 39 · see citing works

Supplementation with Bifidobacterium longum subspecies infantis EVC001 for mitigation of type 1 diabetes autoimmunity: the GPPAD-SINT1A randomised controlled trial protocol

Ziegler, A., Arnolds, S., Koelln, A., Achenbach, P., Berner, R., Bonifacio, E. E., Casteels, K., Larsson, H. E., Gündert, M., Hasford, J., et al. (2021) · BMJ Open · doi:10.1136/bmjopen-2021-052449 · Cited by 38 · see citing works

An Extensively Hydrolyzed Formula Supplemented with Two Human Milk Oligosaccharides Modifies the Fecal Microbiome and Metabolome in Infants with Cow’s Milk Protein Allergy

Boulangé, C. L., Pedersen, H., Martin, F., Siegwald, L., Pallejá, A., Eklund, A. C., Jia, W. P., Zhang, H., Berger, B. W., Sprenger, N., et al. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241411422 · Cited by 37 · see citing works

Impact of Maternal Intrapartum Antibiotics, and Caesarean Section with and without Labour on Bifidobacterium and Other Infant Gut Microbiota

Chen, Y. Y., Zhao, X., Moeder, W., Tun, H. M., Simons, E., Mandhane, P. J., Moraes, T. J., Turvey, S. E., Subbarao, P., Scott, J. A., et al. (2021) · Microorganisms · doi:10.3390/microorganisms9091847 · Cited by 37 · see citing works

Human Milk Oligosaccharide Utilization in Intestinal Bifidobacteria Is Governed by Global Transcriptional Regulator NagR

Arzamasov, A. A., Nakajima, A., Sakanaka, M., Ojima, M. N., Katayama, T., Rodionov, D. A., & Osterman, A. L. (2022) · mSystems · doi:10.1128/msystems.00343-22 · Cited by 37 · see citing works

Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2’-fucosyllactose utilization can be facilitated by coexisting species

Lou, Y. C., Rubin, B. E., Schoelmerich, M. C., DiMarco, K. S., Borges, A. L., Rovinsky, R., Song, L. C. T., Doudna, J. A., & Banfield, J. F. (2023) · Nature Communications · doi:10.1038/s41467-023-43279-y · Cited by 35 · see citing works

2'-Fucosyllactose Promotes Colonization of Akkermansia muciniphila and Prevents Colitis In Vitro and in Mice.

Liu, X., Zhang, B.-W., Zhang, Y.-H., Li, W.-H., Yin, J., Shi, A.-Y., Wang, J., & Wang, S. (2024) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.3c08305 · Cited by 33 · see citing works

Colonization of Supplemented Bifidobacterium breve M-16V in Low Birth Weight Infants and Its Effects on Their Gut Microbiota Weeks Post-administration

Horigome, A., Hisata, K., Odamaki, T., Iwabuchi, N., Xiao, J., & Shimizu, T. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.610080 · Cited by 34 · see citing works

Disruption of the early-life microbiota alters Peyer’s patch development and germinal center formation in gastrointestinal-associated lymphoid tissue

Borbet, T. C., Pawline, M. B., Li, J., Ho, M. L., Yin, Y. S., Zhang, X., Novikova, E., Jackson, K., Mullins, B. J., Ruiz, V. E., et al. (2023) · iScience · doi:10.1016/j.isci.2023.106810 · Cited by 34 · see citing works

N-glycans from human milk glycoproteins are selectively released by an infant gut symbiont in vivo

Karav, S., Casaburi, G., Arslan, A., Kaplan, M., Sucu, B., & Frese, S. A. (2019) · Journal of Functional Foods · doi:10.1016/j.jff.2019.103485 · Cited by 33 · see citing works

Helping Mom Help Baby: Nutrition-Based Support for the Mother-Infant Dyad During Lactation

Ford, E. L., Underwood, M. A., & German, J. B. (2020) · Frontiers in Nutrition · doi:10.3389/fnut.2020.00054 · Cited by 40 · see citing works

Safety and efficacy of probiotic administration to preterm infants: ten common questions

Underwood, M. A., Umberger, E., & Patel, R. M. (2020) · Pediatric Research · doi:10.1038/s41390-020-1080-6 · Cited by 33 · see citing works

Probiotics and Prebiotics

Sanders, M. E., Goh, Y. J., & Klaenhammer, T. R. (2019) · ASM Press eBooks · doi:10.1128/9781555819972.ch32 · Cited by 32 · see citing works

Impact of probiotic on anxiety and depression symptoms in pregnant and lactating women and microbiota of infants: A systematic review and meta-analysis

Halemani, K., Shetty, A. P., Latha, T., Issac, A., Dhiraaj, S., Radha, K., Mishra, P., & Mathias, E. G. (2023) · Journal of Global Health · doi:10.7189/jogh.13.04038 · Cited by 31 · see citing works

Opioid-induced dysbiosis of maternal gut microbiota during gestation alters offspring gut microbiota and pain sensitivity

Abu, Y. F., Singh, S., Tao, J., Chupikova, I., Singh, P. K., Meng, J., & Roy, S. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2292224 · Cited by 32 · see citing works

Neonatal Diet Impacts Bioregional Microbiota Composition in Piglets Fed Human Breast Milk or Infant Formula

Brink, L., Matazel, K. S., Piccolo, B. D., Bowlin, A. K., Chintapalli, S. V., Shankar, K., & Yeruva, L. (2019) · Journal of Nutrition · doi:10.1093/jn/nxz170 · Cited by 31 · see citing works

Role of milk glycome in prevention, treatment, and recovery of COVID-19

Kaplan, M., Şahutoğlu, A. S., Sarıtaş, S., Duman, H., Arslan, A., Pekdemir, B., & Karav, S. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.1033779 · Cited by 31 · see citing works

Potential Applications of Endo-β-N-Acetylglucosaminidases From Bifidobacterium longum Subspecies infantis in Designing Value-Added, Next-Generation Infant Formulas

Duman, H., Kaplan, M., Arslan, A., Şahutoğlu, A. S., Kayılı, H. M., Frese, S. A., & Karav, S. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.646275 · Cited by 30 · see citing works

Early probiotic supplementation with B. infantis in breastfed infants leads to persistent colonization at 1 year

O’Brien, C. E., Meier, A., Cernioglo, K., Mitchell, R. D., Casaburi, G., Frese, S. A., Henrick, B. M., Underwood, M. A., & Smilowitz, J. T. (2021) · Pediatric Research · doi:10.1038/s41390-020-01350-0 · Cited by 66 · see citing works

Colonization of breastfed infants by Bifidobacterium longum subsp. infantis EVC001 reduces virulence gene abundance

Casaburi, G., & Frese, S. A. (2018) · Human Microbiome Journal · doi:10.1016/j.humic.2018.05.001 · Cited by 38 · see citing works

Nutritional Microbiology

(2018) · Current Developments in Nutrition · doi:10.1093/cdn/nzy047

Bifidobacterium longum subsp. infantis EVC001 stably restores the infant gut microbiome over the first year of life in breastfed infants.

Smilowitz, J. T., Hutton, A. A., Contreras, L., Shaw, C. A., Lebrilla, C. B., Frese, S. A., Barile, D., German, B. J., Mills, D. A., & Underwood, M. A. (2018) · PEDIATRICS · doi:10.1542/peds.142.1ma2.163

Maximizing Nutrient Availability for the Breastfed Infant Through Colonization with B. Infantis EVC001 (FS04-04-19)

Shafizadeh, T., Frese, S., & Casaburi, G. (2019) · Current Developments in Nutrition · doi:10.1093/cdn/nzz048.fs04-04-19