Proteobacteria: Microbial signature of dysbiosis in gut microbiota

An obesity-associated gut microbiome with increased capacity for energy harvest

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Structure, function and diversity of the healthy human microbiome

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A human gut microbial gene catalogue established by metagenomic sequencing

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Human gut microbes associated with obesity

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A metagenome-wide association study of gut microbiota in type 2 diabetes

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Obesity alters gut microbial ecology

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Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

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Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

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Host-Bacterial Mutualism in the Human Intestine

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A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

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Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

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Phylogenetic structure of the prokaryotic domain: The primary kingdoms

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Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

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Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

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Inflammatory Mechanisms in Obesity

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Type 2 diabetes as an inflammatory disease

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Bacterial Community Variation in Human Body Habitats Across Space and Time

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The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

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Gut metagenome in European women with normal, impaired and diabetic glucose control

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Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

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Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome

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Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

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Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

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The Placenta Harbors a Unique Microbiome

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A microbial symbiosis factor prevents intestinal inflammatory disease

Mazmanian, S. K., Round, J. L., & Kasper, D. L. (2008) · Nature · doi:10.1038/nature07008 · Cited by 2,340 · see citing works

Factors influencing the composition of the intestinal microbiota in early infancy

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Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

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Artificial sweeteners induce glucose intolerance by altering the gut microbiota

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The Long-Term Stability of the Human Gut Microbiota

Faith, J. J., Guruge, J. L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A. L., Clemente, J. C., Knight, R., Heath, A. C., Leibel, R. L., et al. (2013) · Science · doi:10.1126/science.1237439 · Cited by 2,058 · see citing works

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

Chassaing, B., Koren, O., Goodrich, J. K., Poole, A. C., Srinivasan, S., Ley, R. E., & Gewirtz, A. T. (2015) · Nature · doi:10.1038/nature14232 · Cited by 2,055 · see citing works

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice

Devkota, S., Wang, Y., Musch, M. W., Leone, V., Fehlner-Peach, H., Nadimpalli, A., Antonopoulos, D. A., Jabri, B., & Chang, E. B. (2012) · Nature · doi:10.1038/nature11225 · Cited by 1,904 · see citing works

Human gut microbiota in obesity and after gastric bypass

Zhang, H., DiBaise, J. K., Zuccolo, A., Kudrna, D., Braidotti, M., Yu, Y., Parameswaran, P., Crowell, M. D., Wing, R., Rittmann, B. E., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812600106 · Cited by 1,880 · see citing works

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution

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Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: A connection between endogenous alcohol and NASH

Zhu, L., Baker, S. S., Gill, C., Liu, W., Alkhouri, R., Baker, R. D., & Gill, S. R. (2013) · Hepatology · doi:10.1002/hep.26093 · Cited by 1,708 · see citing works

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

Teeling, H., Fuchs, B. M., Becher, D., Klockow, C., Gardebrecht, A., Bennke, C. M., Kassabgy, M., Huang, S., Mann, A. J., Waldmann, J., et al. (2012) · Science · doi:10.1126/science.1218344 · Cited by 1,405 · see citing works

Persistent gut microbiota immaturity in malnourished Bangladeshi children

Subramanian, S., Huq, S., Yatsunenko, T., Haque, R., Mahfuz, M., Alam, M. A., Benezra, A., DeStefano, J., Meier, M. F., Muegge, B. D., et al. (2014) · Nature · doi:10.1038/nature13421 · Cited by 1,270 · see citing works

Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor

Smith, M. I., Yatsunenko, T., Manary, M. J., Trehan, I., Mkakosya, R., Cheng, J., Kau, A. L., Rich, S. S., Concannon, P., Mychaleckyj, J. C., et al. (2013) · Science · doi:10.1126/science.1229000 · Cited by 1,173 · see citing works

Differential Adaptation of Human Gut Microbiota to Bariatric Surgery–Induced Weight Loss

Furet, J.-P., Kong, L.-C., Tap, J., Poitou, C., Basdevant, A., Bouillot, J.-L., Mariat, D., Corthier, G., Doré, J., Henegar, C., et al. (2010) · Diabetes · doi:10.2337/db10-0253 · Cited by 1,173 · see citing works

Moving pictures of the human microbiome

Caporaso, J. G., Lauber, C. L., Costello, E. K., Berg-Lyons, D., Gonzalez, A., Stombaugh, J., Knights, D., Gajer, P., Ravel, J., Fierer, N., et al. (2011) · Genome Biology · doi:10.1186/gb-2011-12-5-r50 · Cited by 1,138 · see citing works

Diet dominates host genotype in shaping the murine gut microbiota

Carmody, R. N., Gerber, G. K., Luevano, J. M., Gatti, D. M., Somes, L., Svenson, K. L., & Turnbaugh, P. J. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2014.11.010 · Cited by 1,103 · see citing works

Responses of Gut Microbiota and Glucose and Lipid Metabolism to Prebiotics in Genetic Obese and Diet-Induced Leptin-Resistant Mice

Everard, A., Lazarevic, V., Derrien, M., Girard, M., Muccioli, G. G., Neyrinck, A. M., Possemiers, S., Van Holle, A., François, P., de Vos, W. M., et al. (2011) · Diabetes · doi:10.2337/db11-0227 · Cited by 1,076 · see citing works

Host-Derived Nitrate Boosts Growth of <i>E. coli</i> in the Inflamed Gut

Winter, S. E., Winter, M. G., Xavier, M. N., Thiennimitr, P., Poon, V., Keestra, A. M., Laughlin, R. C., Gomez, G., Wu, J., Lawhon, S. D., et al. (2013) · Science · doi:10.1126/science.1232467 · Cited by 1,019 · see citing works

Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section

Jakobsson, H. E., Abrahamsson, T. R., Jenmalm, M. C., Harris, K., Quince, C., Jernberg, C., Björkstén, B., Engstrand, L., & Andersson, A. F. (2014) · Gut · doi:10.1136/gutjnl-2012-303249 · Cited by 1,011 · see citing works

Conserved shifts in the gut microbiota due to gastric bypass reduce host weight and adiposity

Liou, A. P., Paziuk, M., Luevano, J.-M., Machineni, S., Turnbaugh, P. J., & Kaplan, L. M. (2013) · Science Translational Medicine · doi:10.1126/scitranslmed.3005687 · Cited by 1,007 · see citing works

Human Gut Microbiota Changes Reveal the Progression of Glucose Intolerance

Zhang, X., Shen, D., Fang, Z., Jie, Z., Qiu, X., Zhang, C., Chen, Y., & Ji, L. (2013) · PLoS ONE · doi:10.1371/journal.pone.0071108 · Cited by 946 · see citing works

Communicable Ulcerative Colitis Induced by T-bet Deficiency in the Innate Immune System

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Intestinal Bacterial Colonization Induces Mutualistic Regulatory T Cell Responses

Geuking, M. B., Cahenzli, J., Lawson, M. A. E., Ng, D. C. K., Slack, E., Hapfelmeier, S., McCoy, K. D., & Macpherson, A. J. (2011) · Immunity · doi:10.1016/j.immuni.2011.03.021 · Cited by 840 · see citing works

Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice

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Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis

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An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice

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16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis

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Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity

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Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility

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The microbiota regulates neutrophil homeostasis and host resistance to Escherichia coli K1 sepsis in neonatal mice

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Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice

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Activation of β-Catenin in Dendritic Cells Regulates Immunity Versus Tolerance in the Intestine

Manicassamy, S., Reizis, B., Ravindran, R., Nakaya, H. I., Gonzalez, R. M. S., Wang, Y., & Pulendran, B. (2010) · Science · doi:10.1126/science.1188510 · Cited by 500 · see citing works

Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations

Zhang, C., Zhang, M. H., Pang, X., Zhao, Y., Wang, L., & Zhao, L. (2012) · The ISME Journal · doi:10.1038/ismej.2012.27 · Cited by 496 · see citing works

Gut inflammation can boost horizontal gene transfer between pathogenic and commensal <i>Enterobacteriaceae</i>

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Meconium Microbiome Analysis Identifies Bacteria Correlated with Premature Birth

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Metabolic surgery profoundly influences gut microbial–host metabolic cross-talk

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Complex host genetics influence the microbiome in inflammatory bowel disease

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Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes

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NLRC4-driven production of IL-1β discriminates between pathogenic and commensal bacteria and promotes host intestinal defense

Franchi, L., Kamada, N., Nakamura, Y., Burberry, A., Kuffa, P., Suzuki, S., Shaw, M. H., Kim, Y., & Núñez, G. (2012) · Nature Immunology · doi:10.1038/ni.2263 · Cited by 394 · see citing works

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

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Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy

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Effect of Breast and Formula Feeding on Gut Microbiota Shaping in Newborns

Guaraldi, F., & Salvatori, G. (2012) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2012.00094 · Cited by 365 · see citing works

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants

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Gut microbial colonisation in premature neonates predicts neonatal sepsis

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Altered Gut Microbiota and Endocannabinoid System Tone in Obese and Diabetic Leptin-Resistant Mice: Impact on Apelin Regulation in Adipose Tissue

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The Transcription Factor T-bet Regulates Intestinal Inflammation Mediated by Interleukin-7 Receptor+ Innate Lymphoid Cells

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The Human Neonatal Gut Microbiome: A Brief Review

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Microbial Inhabitants of Humans: Their Ecology and Role in Health and Disease

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Proteobacteria-specific IgA regulates maturation of the intestinal microbiota

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Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers

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Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

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Human Milk Glycomics and Gut Microbial Genomics in Infant Feces Show a Correlation between Human Milk Oligosaccharides and Gut Microbiota: A Proof-of-Concept Study

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The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework

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Altered enteric microbiota ecology in interleukin 10-deficient mice during development and progression of intestinal inflammation

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