Broad Conservation of Milk Utilization Genes in Bifidobacterium longum subsp.infantis as Revealed by Comparative Genomic Hybridization

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302 · see citing works

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617 · see citing works

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506580102 · Cited by 53,625 · see citing works

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

Felsenstein, J. (1985) · Evolution · doi:10.1111/j.1558-5646.1985.tb00420.x · Cited by 44,735 · see citing works

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

Tamura, K., Dudley, J. T., Nei, M., & Kumar, S. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm092 · Cited by 28,734 · see citing works

Cluster analysis and display of genome-wide expression patterns

Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14863 · Cited by 12,617 · see citing works

An obesity-associated gut microbiome with increased capacity for energy harvest

Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444 · see citing works

In silico prediction of protein-protein interactions in human macrophages

Souiai, O., Guerfali, F. Z., Miled, S. B., Brun, C., & Benkahla, A. (2014) · BMC Research Notes · doi:10.1186/1756-0500-7-157 · Cited by 10,785 · see citing works

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

Irizarry, R. A. (2003) · Biostatistics · doi:10.1093/biostatistics/4.2.249 · Cited by 10,603 · see citing works

Significance analysis of microarrays applied to the ionizing radiation response

Tusher, V. G., Tibshirani, R., & Chu, G. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.091062498 · Cited by 10,568 · see citing works

PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

Mootha, V. K., Lindgren, C. M., Eriksson, K.-F., Subramanian, A., Sihag, S., Lehar, J., Puigserver, P., Carlsson, E., Ridderstråle, M., Laurila, E., et al. (2003) · Nature Genetics · doi:10.1038/ng1180 · Cited by 10,197 · see citing works

Application of Phylogenetic Networks in Evolutionary Studies

Huson, D. H., & Bryant, D. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msj030 · Cited by 8,751 · see citing works

A core gut microbiome in obese and lean twins

Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823 · see citing works

Prospects for inferring very large phylogenies by using the neighbor-joining method

Tamura, K., Nei, M., & Kumar, S. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0404206101 · Cited by 5,588 · see citing works

Host-Bacterial Mutualism in the Human Intestine

Bäckhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., & Gordon, J. I. (2005) · Science · doi:10.1126/science.1104816 · Cited by 5,277 · see citing works

TM4: a free, open-source system for microarray data management and analysis

Saeed, A. I., Sharov, V., White, J., Li, J., Liang, W., Bhagabati, N., Braisted, J., Klapa, M., Currier, T., Thiagarajan, M., et al. (2003) · BioTechniques · doi:10.2144/03342mt01 · Cited by 4,837 · see citing works

An Immunomodulatory Molecule of Symbiotic Bacteria Directs Maturation of the Host Immune System

Mazmanian, S. K., Liu, C. H., Tzianabos, A. O., & Kasper, D. L. (2005) · Cell · doi:10.1016/j.cell.2005.05.007 · Cited by 2,910 · see citing works

Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens

Servin, A. L. (2004) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2004.01.003 · Cited by 1,234 · see citing works

Probiotics: an overview of beneficial effects

Ouwehand, A. C., Salminen, S., & Isolauri, E. (2002) · Antonie van Leeuwenhoek · doi:10.1023/a:1020620607611 · Cited by 1,045 · see citing works

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

Schell, M. A., Karmirantzou, M., Snel, ‎., Vilanova, D., Berger, B. W., Pessi, G., Zwahlen, M.-C., Desiere, F., Peer Bork, B., Delley, M., et al. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.212527599 · Cited by 942 · see citing works

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

Sela, D. A., Chapman, J., Adeuya, A., Kim, J., Chen, F., Whitehead, T. R., Lapidus, A. L., Rokhsar, D. S., Lebrilla, C. B., German, J. B., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0809584105 · Cited by 884 · see citing works

Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, V. K., Srivastava, T. P., et al. (2007) · DNA Research · doi:10.1093/dnares/dsm018 · Cited by 869 · see citing works

Molecular Monitoring of Succession of Bacterial Communities in Human Neonates

Favier, C. F., Vaughan, E. E., de Vos, W. M., & Akkermans, A. D. L. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.1.219-226.2002 · Cited by 859 · see citing works

Phylogenetic test of the molecular clock and linearized trees.

Takezaki, N., Rzhetsky, A., & Nei, M. (1995) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040259 · Cited by 826 · see citing works

ABC transporters: physiology, structure and mechanism – an overview

Higgins, C. F. (2001) · Research in Microbiology · doi:10.1016/s0923-2508(01)01193-7 · Cited by 643 · see citing works

Protection of the Neonate by the Innate Immune System of Developing Gut and of Human Milk

Newburg, D. S., & Walker, W. A. (2007) · Pediatric Research · doi:10.1203/01.pdr.0000250274.68571.18 · Cited by 524 · see citing works

Leptin-specific patterns of gene expression in white adipose tissuePreprint

Soukas, A. A., Cohen, P., Socci, N. D., & Friedman, J. M. (2000) · Genes & Development · doi:10.1101/gad.14.8.963 · Cited by 516 · see citing works

A Strategy for Annotating the Human Milk Glycome

Niñonuevo, M. R., Park, Y., Yin, H., Zhang, J., Ward, R. E., Clowers, B. H., German, J. B., Freeman, S. L., Killeen, K., Grimm, R., et al. (2006) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf0615810 · Cited by 495 · see citing works

Bifidobacterium strains from resident infant human gastrointestinal microflora exert antimicrobial activity

Liévin, V, Peiffer, I., Hudault, S., Rochat, F., Brassart, D., Neeser, J.-R., & Servin, A. L. (2000) · Gut · doi:10.1136/gut.47.5.646 · Cited by 397 · see citing works

Glycoprofiling of bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation

LoCascio, R. G., Ninonuevo, M. R., Freeman, S. L., Sela, D. A., Grimm, R., Lebrilla, C. B., Mills, D. A., & German, J. B. (2007) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf0710480 · Cited by 365 · see citing works

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

Rzhetsky, A., & Nei, M. (1992) · Journal of Molecular Evolution · doi:10.1007/bf00161174 · Cited by 361 · see citing works

Bifidobacterium bifidumLacto-N-Biosidase, a Critical Enzyme for the Degradation of Human Milk Oligosaccharides with a Type 1 Structure

Wada, J., Ando, T., Kiyohara, M., Ashida, H., Kitaoka, M., Yamaguchi, M., Kumagai, H., Katayama, T., & Yamamoto, K. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.00149-08 · Cited by 230 · see citing works

NITROGEN CYCLING IN THE GUT

Fuller, M. F., & Reeds, P. J. (1998) · Annual Review of Nutrition · doi:10.1146/annurev.nutr.18.1.385 · Cited by 225 · see citing works

Biochemistry and Role of Sialic Acids

Schauer, R., Kelm, S., Reuter, G., Roggentin, P., & Shaw, L. (1995) · Springer eBooks · doi:10.1007/978-1-4757-9504-2_2 · Cited by 223 · see citing works

Large-Scale Clustering of cDNA-Fingerprinting DataPreprint

Herwig, R., Poustka, A. J., Müller, C. H., Bull, C., Lehrach, H. R., & O’Brien, J. (1999) · Genome Research · doi:10.1101/gr.9.11.1093 · Cited by 221 · see citing works

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

Markowitz, V. M., Szeto, E., Palaniappan, K., Grechkin, Y., Chu, K., Chen, I.-M. A., Dubchak, I. L., Anderson, I., Lykidis, A., Mavromatis, K., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm846 · Cited by 211 · see citing works

The First Prebiotics in Humans

Coppa, G. V., Bruni, S., Morelli, L., Soldi, S., & Gabrielli, O. (2004) · Journal of Clinical Gastroenterology · doi:10.1097/01.mcg.0000128926.14285.25 · Cited by 202 · see citing works

Novel Putative Galactose Operon Involving Lacto-N-Biose Phosphorylase inBifidobacterium longum

Kitaoka, M., Tian, J., & Nishimoto, M. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.6.3158-3162.2005 · Cited by 200 · see citing works

Development of bacterial and bifidobacterial communities in feces of newborn babies

Favier, C. F., de Vos, W. M., & Akkermans, A. D. L. (2003) · Anaerobe · doi:10.1016/j.anaerobe.2003.07.001 · Cited by 194 · see citing works

Identification ofN-Acetylhexosamine 1-Kinase in the Complete Lacto-N-Biose I/Galacto-N-Biose Metabolic Pathway inBifidobacterium longum

Nishimoto, M., & Kitaoka, M. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01425-07 · Cited by 194 · see citing works

Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth

Lee, J.-H., Karamychev, V., Kozyavkin, S. A., Mills, D. A., Pavlov, A., Pavlova, N. V., Polouchine, N., Richardson, P., Shakhova, V. V., Slesarev, A. I., et al. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-247 · Cited by 181 · see citing works

Influence of two infant formulas and human milk on the development of the faecal flora in newborn infants

Kleessen, B., Bunke, H., Tovar, K., Noack, J., & Sawatzki, G. (1995) · Acta Paediatrica · doi:10.1111/j.1651-2227.1995.tb13567.x · Cited by 179 · see citing works

Analysis of bifidobacterial evolution using a multilocus approach

Ventura, M., Canchaya, C. A., Casale, A. D., Dellaglio, F., Neviani, E., Fitzgerald, G. F., & van Sinderen, D. (2006) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64233-0 · Cited by 158 · see citing works

Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity

Cai, H., Rodriguez, B. T., Zhang, W., Broadbent, J. R., & Steele, J. L. (2007) · Microbiology · doi:10.1099/mic.0.2007/006452-0 · Cited by 148 · see citing works

Complete Genome Sequence of Bifidobacterium longum subsp. longum KACC 91563

Ham, J.-S., Lee, T., Byun, M.-J., Lee, K., Kim, M., Han, G.-S., Jeong, S.-G., Oh, M., Kim, D., & Kim, H. (2011) · Journal of Bacteriology · doi:10.1128/jb.05620-11 · Cited by 143 · see citing works

A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides

LoCascio, R. G., Niñonuevo, M. R., Kronewitter, S. R., Freeman, S. L., German, J. B., Lebrilla, C. B., & Mills, D. A. (2008) · Microbial Biotechnology · doi:10.1111/j.1751-7915.2008.00072.x · Cited by 140 · see citing works

Survival of Human Milk Oligosaccharides in the Intestine of Infants

Chaturvedi, P., Warren, C. D., Buescher, C., Pickering, L. K., & Newburg, D. S. (2001) · Advances in experimental medicine and biology · doi:10.1007/978-1-4615-1371-1_39 · Cited by 124 · see citing works

Unification of Bifidobacterium infantis and Bifidobacterium suis as Bifidobacterium longum.

Sakata, S., Kitahara, M., Sakamoto, M., Hayashi, H., Fukuyama, M., & Benno, Y. (2002) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-52-6-1945 · Cited by 111 · see citing works

Proposal to reclassify the three biotypes of Bifidobacterium longum as three subspecies: Bifidobacterium longum subsp. longum subsp. nov., Bifidobacterium longum subsp. infantis comb. nov. and Bifidobacterium longum subsp. suis comb. nov.

Mattarelli, P., Bonaparte, C., Pot, B., & Biavati, B. (2008) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.65319-0 · Cited by 106 · see citing works

Bioactive Components of Human Milk

Newburg, D. S. (2001) · Advances in experimental medicine and biology · doi:10.1007/978-1-4615-1371-1_1 · Cited by 102 · see citing works

Differential Transcriptional Response of Bifidobacterium longum to Human Milk, Formula Milk, and Galactooligosaccharide

GONZALEZ, R., Klaassens, E. S., Malinen, E., de Vos, W. M., & Vaughan, E. E. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.00122-08 · Cited by 92 · see citing works

EU project Crownalife: functional foods, gut microflora and healthy ageing

Silvi, S., Verdenelli, M. C., Orpianesi, C., & Cresci, A. (2002) · Journal of Food Engineering · doi:10.1016/s0260-8774(02)00249-2 · Cited by 87 · see citing works

Non‐Protein Nitrogen and True Protein in Infant Formulas

Donovan, S. M., & Lönnerdal, B. L. (1989) · Acta Paediatrica · doi:10.1111/j.1651-2227.1989.tb17927.x · Cited by 84 · see citing works

Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing

Delétoile, A., Passet, V., Aires, J., Chambaud, I., Butel, M., Smokvina, T., & Brisse, S. (2010) · Research in Microbiology · doi:10.1016/j.resmic.2009.12.006 · Cited by 74 · see citing works

Comparative genomic analysis of Mycobacterium avium subspecies obtained from multiple host species

Paustian, M. L., Zhu, X., Sreevatsan, S., Robbe‐Austerman, S., Kapur, V., & Bannantine, J. P. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-135 · Cited by 60 · see citing works

Urease production by Streptococcus thermophilus

Zotta, T., Ricciardi, A., Rossano, R., & Parente, E. (2007) · Food Microbiology · doi:10.1016/j.fm.2007.07.001 · Cited by 51 · see citing works

A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study

Taboada, E. N., Acedillo, R. R., Luebbert, C., Findlay, W. A., & Nash, J. H. E. (2005) · BMC Genomics · doi:10.1186/1471-2164-6-78 · Cited by 34 · see citing works

Improved analysis of bacterial CGH data beyond the log-ratio paradigm

Snipen, L. G., Nyquist, O. L., Solheim, M., Aakra, Å., & Nes, I. F. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-91 · Cited by 11 · see citing works

How glycan metabolism shapes the human gut microbiota

Koropatkin, N. M., Cameron, E. A., & Martens, E. C. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2746 · Cited by 1,419 · see citing works

Bifidobacteria-mediated immune system imprinting early in life

Henrick, B. M., Rodriguez, L., Lakshmikanth, T., Pou, C., Henckel, E., Arzoomand, A., Olin, A., Wang, J., Mikeš, J., Tan, Z., et al. (2021) · Cell · doi:10.1016/j.cell.2021.05.030 · Cited by 808 · see citing works

The human gut microbiome: ecology and recent evolutionary changes

Walter, J., & Ley, R. (2011) · Annual Review of Microbiology · doi:10.1146/annurev-micro-090110-102830 · Cited by 720 · see citing works

Diet and the Intestinal Microbiome: Associations, Functions, and Implications for Health and Disease

Albenberg, L. G., & Wu, G. D. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.01.058 · Cited by 606 · see citing works

Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition

Charbonneau, M. R., O’Donnell, D., Blanton, L. V., Totten, S. M., Davis, J. C. C., Barratt, M. J., Cheng, J., Guruge, J., Talcott, M., Bain, J. R., et al. (2016) · Cell · doi:10.1016/j.cell.2016.01.024 · Cited by 606 · see citing works

Physiology of Consumption of Human Milk Oligosaccharides by Infant Gut-associated Bifidobacteria

Asakuma, S., Hatakeyama, E., Urashima, T., Yoshida, E., Katayama, T., Yamamoto, K., Kumagai, H., Ashida, H., Hirose, J., & Kitaoka, M. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.248138 · Cited by 442 · see citing works

Bifidobacterium longum subspecies infantis: champion colonizer of the infant gut

Underwood, M. A., German, J. B., Lebrilla, C. B., & Mills, D. A. (2015) · Pediatric Research · doi:10.1038/pr.2014.156 · Cited by 439 · see citing works

Human milk oligosaccharide consumption by intestinal microbiota

Marcobal, A. M., & Sonnenburg, J. L. (2012) · Clinical Microbiology and Infection · doi:10.1111/j.1469-0691.2012.03863.x · Cited by 311 · see citing works

Bifidobacteria isolated from infants and cultured on human milk oligosaccharides affect intestinal epithelial function

Chichlowski, M., De Lartigue, G., German, J. B., Raybould, H. E., & Mills, D. A. (2012) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0b013e31824fb899 · Cited by 276 · see citing works

Impact of human milk bacteria and oligosaccharides on neonatal gut microbiota establishment and gut health

Jost, T., Lacroix, C., Braegger, C., & Chassard, C. (2015) · Nutrition Reviews · doi:10.1093/nutrit/nuu016 · Cited by 267 · see citing works

The principal fucosylated oligosaccharides of human milk exhibit prebiotic properties on cultured infant microbiota

Yu, Z., Chen, C., Kling, D. E., Liu, B., McCoy, J. M., Merighi, M., Heidtman, M. I., & Newburg, D. S. (2012) · Glycobiology · doi:10.1093/glycob/cws138 · Cited by 252 · see citing works

Variation in Consumption of Human Milk Oligosaccharides by Infant Gut-Associated Strains of Bifidobacterium breve

Ruiz‐Moyano, S., Totten, S. M., Garrido, D. A., Smilowitz, J. T., German, J. B., Lebrilla, C. B., & Mills, D. A. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.01843-13 · Cited by 238 · see citing works

Persistence of Supplemented Bifidobacterium longum subsp. <i>infantis</i> EVC001 in Breastfed Infants

Frese, S. A., Hutton, A. A., Contreras, L. N., Shaw, C. A., Palumbo, M. C., Casaburi, G., Xu, G., Davis, J. C. C., Lebrilla, C. B., Henrick, B. M., et al. (2017) · mSphere · doi:10.1128/msphere.00501-17 · Cited by 231 · see citing works

Comparison of the Compositions of the Stool Microbiotas of Infants Fed Goat Milk Formula, Cow Milk-Based Formula, or Breast Milk

Tannock, G. W., Lawley, B., Munro, K., Pathmanathan, S. G., Zhou, S. J., Makrides, M., Gibson, R. A., Sullivan, T., Prosser, C. G., Lowry, D. J., et al. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.03910-12 · Cited by 230 · see citing works

Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications

Garrido, D., Dallas, D. C., & Mills, D. A. (2013) · Microbiology · doi:10.1099/mic.0.064113-0 · Cited by 228 · see citing works

Genetic Mechanisms of Prebiotic Oligosaccharide Metabolism in Probiotic Microbes

Goh, Y. J., & Klaenhammer, T. R. (2014) · Annual Review of Food Science and Technology · doi:10.1146/annurev-food-022814-015706 · Cited by 224 · see citing works

Oligosaccharide Binding Proteins from Bifidobacterium longum subsp. infantis Reveal a Preference for Host Glycans

Garrido, D. A., Kim, J., German, J. B., Raybould, H. E., & Mills, D. A. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017315 · Cited by 218 · see citing works

Robust variation in infant gut microbiome assembly across a spectrum of lifestyles

Olm, M. R., Dahan, D., Carter, M. M., Merrill, B. D., Yu, F. B., Jain, S., Meng, X., Tripathi, S. M., Wastyk, H. C., Neff, N. F., et al. (2022) · Science · doi:10.1126/science.abj2972 · Cited by 210 · see citing works

Human milk oligosaccharide consumption by probiotic and human-associated bifidobacteria and lactobacilli

Thongaram, T., Hoeflinger, J. L., Chow, J., & Miller, M. J. (2017) · Journal of Dairy Science · doi:10.3168/jds.2017-12753 · Cited by 215 · see citing works

Varied Pathways of Infant Gut-Associated Bifidobacterium to Assimilate Human Milk Oligosaccharides: Prevalence of the Gene Set and Its Correlation with Bifidobacteria-Rich Microbiota Formation

Sakanaka, M., Gotoh, A., Yoshida, K., Odamaki, T., Koguchi, H., Xiao, J., Kitaoka, M., & Katayama, T. (2019) · Nutrients · doi:10.3390/nu12010071 · Cited by 215 · see citing works

Genomics and ecological overview of the genus Bifidobacterium

Turroni, F., van Sinderen, D., & Ventura, M. (2010) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2010.12.010 · Cited by 197 · see citing works

Human milk and related oligosaccharides as prebiotics

Barile, D., & Rastall, R. A. (2013) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2013.01.008 · Cited by 193 · see citing works

Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria

Garrido, D. A., Ruiz‐Moyano, S., Lemay, D. G., Sela, D. A., German, J. B., & Mills, D. A. (2015) · Scientific Reports · doi:10.1038/srep13517 · Cited by 189 · see citing works

Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation

Schwab, C., Ruscheweyh, H., Bunešová, V., Pham, V. T., Beerenwinkel, N., & Lacroix, C. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00095 · Cited by 188 · see citing works

Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides and Infant Gut Microbiota

Davis, J. C. C., Lewis, Z. T., Krishnan, S., Bernstein, R. M., Moore, S. E., Prentice, A. M., Mills, D. A., Lebrilla, C. B., & Zivkovic, A. M. (2017) · Scientific Reports · doi:10.1038/srep40466 · Cited by 187 · see citing works

Diet and microbiota linked in health and disease

Requena, T., Martínez‐Cuesta, M. C., & Peláez, C. (2018) · Food & Function · doi:10.1039/c7fo01820g · Cited by 187 · see citing works

A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596

Garrido, D. A., Ruiz‐Moyano, S., Kirmiz, N., Davis, J. C. C., Totten, S. M., Lemay, D. G., Ugalde, J. A., German, J. B., Lebrilla, C. B., & Mills, D. A. (2016) · Scientific Reports · doi:10.1038/srep35045 · Cited by 185 · see citing works

The Impact of the Milk Glycobiome on the Neonate Gut Microbiota

Pacheco, A. R., Barile, D., Underwood, M. A., & Mills, D. A. (2014) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-022114-111112 · Cited by 181 · see citing works

Bovine Milk as a Source of Functional Oligosaccharides for Improving Human Health

Zivkovic, A. M., & Barile, D. (2011) · Advances in Nutrition · doi:10.3945/an.111.000455 · Cited by 180 · see citing works

Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes

Peterson, D., Bonham, K. S., Rowland, S., Pattanayak, C. W., & Klepac‐Ceraj, V. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.670336 · Cited by 178 · see citing works

The Influence of Milk Oligosaccharides on Microbiota of Infants: Opportunities for Formulas

Chichlowski, M., German, J. B., Lebrilla, C. B., & Mills, D. A. (2011) · Annual Review of Food Science and Technology · doi:10.1146/annurev-food-022510-133743 · Cited by 174 · see citing works

Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense

Bunešová, V., Lacroix, C., & Schwab, C. (2016) · BMC Microbiology · doi:10.1186/s12866-016-0867-4 · Cited by 173 · see citing works

Bifidobacterium infantis treatment promotes weight gain in Bangladeshi infants with severe acute malnutrition

Barratt, M. J., Nuzhat, S., Ahsan, K., Frese, S. A., Arzamasov, A. A., Sarker, S. A., Islam, M. M., Palit, P., Islam, M. R., Hibberd, M. C., et al. (2022) · Science Translational Medicine · doi:10.1126/scitranslmed.abk1107 · Cited by 169 · see citing works

Sharing of human milk oligosaccharides degradants within bifidobacterial communities in faecal cultures supplemented with Bifidobacterium bifidum

Gotoh, A., Katoh, T., Sakanaka, M., Ling, Y., Yamada, C., Asakuma, S., Urashima, T., Tomabechi, Y., Katayama-Ikegami, A., Kurihara, S., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-32080-3 · Cited by 168 · see citing works

Microbial Urease in Health and Disease

Mora, D., & Arioli, S. (2014) · PLoS Pathogens · doi:10.1371/journal.ppat.1004472 · Cited by 161 · see citing works

Validating bifidobacterial species and subspecies identity in commercial probiotic products

Lewis, Z. T., Shani, G., Masarweh, C. F., Popovic, M., Frese, S. A., Sela, D. A., Underwood, M. A., & Mills, D. A. (2016) · Pediatric Research · doi:10.1038/pr.2015.244 · Cited by 154 · see citing works

Article Commentary: The Influence of Early Infant-Feeding Practices on the Intestinal Microbiome and Body Composition in Infants

O’Sullivan, A. M., Farver, M., & Smilowitz, J. T. (2015) · Nutrition and Metabolic Insights · doi:10.4137/nmi.s29530 · Cited by 153 · see citing works

A molecular basis for bifidobacterial enrichment in the infant gastrointestinal tract

Garrido, D., Barile, D., & Mills, D. A. (2012) · Advances in Nutrition · doi:10.3945/an.111.001586 · Cited by 149 · see citing works

Mucin Cross-Feeding of Infant Bifidobacteria and Eubacterium hallii

Bunešová, V., Lacroix, C., & Schwab, C. (2017) · Microbial Ecology · doi:10.1007/s00248-017-1037-4 · Cited by 149 · see citing works

The genus Bifidobacterium : from genomics to functionality of an important component of the mammalian gut microbiota

Alessandri, G., van Sinderen, D., & Ventura, M. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.03.006 · Cited by 147 · see citing works

Bifidobacterium longum subsp. infantis uses two different β-galactosidases for selectively degrading type-1 and type-2 human milk oligosaccharides

Yoshida, E., Sakurama, H., Kiyohara, M., Nakajima, M., Kitaoka, M., Ashida, H., Hirose, J., Katayama, T., Yamamoto, K., & Kumagai, H. (2011) · Glycobiology · doi:10.1093/glycob/cwr116 · Cited by 140 · see citing works

Soy and Gut Microbiota: Interaction and Implication for Human Health

Huang, H., Krishnan, H. B., Pham, Q., Yu, L. L., & Wang, T. T. Y. (2016) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.6b03725 · Cited by 138 · see citing works

Human milk oligosaccharide categories define the microbiota composition in human colostrum

Aakko, J., Kumar, H., Rautava, S., Wise, A., Autran, C. A., Bode, L., Isolauri, E., & Salminen, S. (2017) · Beneficial Microbes · doi:10.3920/bm2016.0185 · Cited by 136 · see citing works

Galacto-oligosaccharides and colorectal cancer: Feeding our intestinal probiome

Bruno-Bárcena, J. M., & Azcárate-Peril, M. A. (2014) · Journal of Functional Foods · doi:10.1016/j.jff.2014.10.029 · Cited by 127 · see citing works

Beneficial effects of human milk oligosaccharides on gut microbiota

Musilová, Š., Rada, V., Vlková, E., & Bunešová, V. (2014) · Beneficial Microbes · doi:10.3920/bm2013.0080 · Cited by 127 · see citing works

Heat-treated colostrum feeding promotes beneficial bacteria colonization in the small intestine of neonatal calves

Malmuthuge, N., Chen, Y., Liang, G., Goonewardene, L. A., & Guan, L. L. (2015) · Journal of Dairy Science · doi:10.3168/jds.2015-9607 · Cited by 131 · see citing works

Bifidobacterium longum Subspecies infantis (B. infantis) in Pediatric Nutrition: Current State of Knowledge

Chichlowski, M., Shah, N., Wampler, J. L., Wu, S. S., & Vanderhoof, J. A. (2020) · Nutrients · doi:10.3390/nu12061581 · Cited by 122 · see citing works

Bifidobacterial Enzymes Involved in the Metabolism of Human Milk Oligosaccharides

Kitaoka, M. (2012) · Advances in Nutrition · doi:10.3945/an.111.001420 · Cited by 118 · see citing works

Exposure of Bifidobacterium longum subsp. infantis to Milk Oligosaccharides Increases Adhesion to Epithelial Cells and Induces a Substantial Transcriptional Response

Kavanaugh, D. W., O’Callaghan, J., Buttó, L. F., Slattery, H., Lane, J. A., Clyne, M., Kane, M., Joshi, L., & Hickey, R. M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0067224 · Cited by 115 · see citing works

Utilization of galactooligosaccharides by Bifidobacterium longum subsp. infantis isolates

Garrido, D. A., Ruiz‐Moyano, S., Jimenez-Espinoza, R., Eom, H., Block, D. E., & Mills, D. A. (2012) · Food Microbiology · doi:10.1016/j.fm.2012.10.003 · Cited by 113 · see citing works

Infant Maturity at Birth Reveals Minor Differences in the Maternal Milk Metabolome in the First Month of Lactation

Spevacek, A., Smilowitz, J. T., Chin, E. L., Underwood, M. A., German, J. B., & Slupsky, C. M. (2015) · Journal of Nutrition · doi:10.3945/jn.115.210252 · Cited by 112 · see citing works

Host-Microbe Interactions in the Neonatal Intestine: Role of Human Milk Oligosaccharides

Donovan, S. M., Wang, M., Li, M., Friedberg, I., Schwartz, S., & Chapkin, R. S. (2012) · Advances in Nutrition · doi:10.3945/an.112.001859 · Cited by 107 · see citing works

Insights into the reason of Human-Residential Bifidobacteria (HRB) being the natural inhabitants of the human gut and their potential health-promoting benefits

Wong, C. B., Odamaki, T., & Xiao, J. (2020) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaa010 · Cited by 106 · see citing works

Bifidobacterial utilization of human milk oligosaccharides

Sela, D. A. (2011) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2011.01.025 · Cited by 105 · see citing works

Bifidobacterial Succession and Correlation Networks in a Large Unselected Cohort of Mothers and Their Children

Avershina, E., Storrø, O., Øien, T., Johnsen, R., Wilson, R., Egeland, T., & Rudi, K. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.02359-12 · Cited by 101 · see citing works

Release and utilization of N-acetyl-d-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis

Garrido, D. A., Ruiz‐Moyano, S., & Mills, D. A. (2012) · Anaerobe · doi:10.1016/j.anaerobe.2012.04.012 · Cited by 102 · see citing works

Genotyping by PCR and high-throughput sequencing of commercial probiotic products reveals composition biases

Morovic, W., Hibberd, A. A., Zabel, B., Barrangou, R., & Stahl, B. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01747 · Cited by 99 · see citing works

Bifidobacteria and humans: our special friends, from ecological to genomics perspectives

Ventura, M., Turroni, F., Lugli, G. A., & van Sinderen, D. (2013) · Journal of the Science of Food and Agriculture · doi:10.1002/jsfa.6356 · Cited by 99 · see citing works

Intestinal fermentation of lactose and prebiotic lactose derivatives, including human milk oligosaccharides

Venema, K. (2011) · International Dairy Journal · doi:10.1016/j.idairyj.2011.10.011 · Cited by 98 · see citing works

Comparative Genomic Analysis of 45 Type Strains of the Genus Bifidobacterium: A Snapshot of Its Genetic Diversity and Evolution

Sun, Z., Zhang, W., Guo, C., Yang, X., Liu, W., Wu, Y., Song, Y., Kwok, L. Y., Cui, Y., Menghe, B., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0117912 · Cited by 97 · see citing works

Effect of intrapartum antibiotics on the intestinal microbiota of infants: a systematic review

Zimmermann, P., & Curtis, N. C. (2019) · Archives of Disease in Childhood Fetal & Neonatal · doi:10.1136/archdischild-2018-316659 · Cited by 97 · see citing works

A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning

Vatanen, T., Ang, Q. Y., Siegwald, L., Sarker, S. A., Roy, C. I. L., Duboux, S., Delannoy-Bruno, O., Ngom‐Bru, C., Boulangé, C. L., Stražar, M., et al. (2022) · Cell · doi:10.1016/j.cell.2022.10.011 · Cited by 92 · see citing works

Untangling human milk oligosaccharides and infant gut microbiome

Masi, A. C., & Stewart, C. J. (2021) · iScience · doi:10.1016/j.isci.2021.103542 · Cited by 94 · see citing works

Dosing a synbiotic of human milk oligosaccharides and B. infantis leads to reversible engraftment in healthy adult microbiomes without antibiotics

Button, J. E., Autran, C. A., Reens, A. L., Cosetta, C. M., Smriga, S., Ericson, M. E., Pierce, J. V., Cook, D. N., Lee, M. L., Sun, A. K., et al. (2022) · Cell Host & Microbe · doi:10.1016/j.chom.2022.04.001 · Cited by 85 · see citing works

Infant gut microbiome is enriched with Bifidobacterium longum ssp. infantis in Old Order Mennonites with traditional farming lifestyle

Seppo, A., Bu, K., Jumabaeva, M., Thakar, J., Choudhury, R. A., Yonemitsu, C., Bode, L., Martina, C. A., Allen, M., Tamburini, S., et al. (2021) · Allergy · doi:10.1111/all.14877 · Cited by 80 · see citing works

Prevention of Necrotizing Enterocolitis Through Manipulation of the Intestinal Microbiota of the Premature Infant

Vongbhavit, K., & Underwood, M. A. (2016) · Clinical Therapeutics · doi:10.1016/j.clinthera.2016.01.006 · Cited by 79 · see citing works

Metabolism of the predominant human milk oligosaccharide fucosyllactose by an infant gut commensal

James, K., Bottacini, F., Serrano-Contreras, J. I., Vigoureux, M., Egan, M., Motherway, M. O., Holmes, E. C., & van Sinderen, D. (2019) · Scientific Reports · doi:10.1038/s41598-019-51901-7 · Cited by 76 · see citing works

Metagenomic insights of the infant microbiome community structure and function across multiple sites in the United States

Casaburi, G., Duar, R. M., Brown, H. K., Mitchell, R. D., Kazi, S., Chew, S., Cagney, O., Flannery, R. L., Sylvester, K. G., Frese, S. A., et al. (2021) · Scientific Reports · doi:10.1038/s41598-020-80583-9 · Cited by 75 · see citing works

Soy bioactive peptides and the gut microbiota modulation

Ashaolu, T. J. (2020) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-020-10799-2 · Cited by 72 · see citing works

Comparative Genome Analysis of Bifidobacterium longum subsp. infantis Strains Reveals Variation in Human Milk Oligosaccharide Utilization Genes among Commercial Probiotics

Duar, R. M., Casaburi, G., Mitchell, R. D., Scofield, L. N. C., Ramírez, C. A. O., Barile, D., Henrick, B. M., & Frese, S. A. (2020) · Nutrients · doi:10.3390/nu12113247 · Cited by 70 · see citing works

Strain-specific strategies of 2′-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697

Zabel, B., Gerdes, S., Evans, K. C., Nedveck, D. A., Singles, S. K., Volk, B., & Budinoff, C. R. (2020) · Scientific Reports · doi:10.1038/s41598-020-72792-z · Cited by 71 · see citing works

Colonization and probiotic function of Bifidobacterium longum

Zhang, C., Yu, Z., Zhao, J., Zhang, H., Zhai, Q., & Chen, W. (2018) · Journal of Functional Foods · doi:10.1016/j.jff.2018.12.022 · Cited by 70 · see citing works

Factors Influencing the Intestinal Microbiome During the First Year of Life

Zimmermann, P., & Curtis, N. C. (2018) · The Pediatric Infectious Disease Journal · doi:10.1097/inf.0000000000002103 · Cited by 68 · see citing works

Early probiotic supplementation with B. infantis in breastfed infants leads to persistent colonization at 1 year

O’Brien, C. E., Meier, A., Cernioglo, K., Mitchell, R. D., Casaburi, G., Frese, S. A., Henrick, B. M., Underwood, M. A., & Smilowitz, J. T. (2021) · Pediatric Research · doi:10.1038/s41390-020-01350-0 · Cited by 66 · see citing works

Molecular strategies for the utilisation of human milk oligosaccharides by infant gut-associated bacteria

Kiely, L. J., Busca, K., Lane, J. A., van Sinderen, D., & Hickey, R. M. (2023) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuad056 · Cited by 63 · see citing works

Human milk oligosaccharides modify the strength of priority effects in the Bifidobacterium community assembly during infancy

Laursen, M. F., & Roager, H. M. (2023) · The ISME Journal · doi:10.1038/s41396-023-01525-7 · Cited by 63 · see citing works

Adaptation of bifidobacteria to the gastrointestinal tract and functional consequences

Sánchez, B., Ruíz, L., Gueimonde, M., Ruas‐Madiedo, P., & Margollés, A. (2012) · Pharmacological Research · doi:10.1016/j.phrs.2012.11.004 · Cited by 64 · see citing works

Breastfeeding Behaviors and the Innate Immune System of Human Milk: Working Together to Protect Infants against Inflammation, HIV-1, and Other Infections

Henrick, B. M., Yao, X.-D., Nasser, L., Roozrogousheh, A., & Rosenthal, K. L. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01631 · Cited by 84 · see citing works

Complex Oligosaccharide Utilization Pathways in Lactobacillus

Zúñiga, M., Yebra, M. J., & Monedero, V. (2020) · Current Issues in Molecular Biology · doi:10.21775/cimb.040.049 · Cited by 62 · see citing works

Longitudinal quantification of Bifidobacterium longum subsp. infantis reveals late colonization in the infant gut independent of maternal milk HMO composition

Ennis, D., Shmorak, S., Jantscher‐Krenn, E., & Yassour, M. (2024) · Nature Communications · doi:10.1038/s41467-024-45209-y · Cited by 61 · see citing works

Oligosaccharides in goats’ milk-based infant formula and their prebiotic and anti-infection properties

Leong, A., Liu, Z., Almshawit, H., Zisu, B., Pillidge, C. J., Rochfort, S. J., & Gill, H. (2019) · British Journal Of Nutrition · doi:10.1017/s000711451900134x · Cited by 59 · see citing works

Food Oligosaccharides

(2014) · Wiley eBooks · doi:10.1002/9781118817360 · Cited by 56 · see citing works

Differential Establishment of Bifidobacteria in the Breastfed Infant Gut

Lewis, Z. T., & Mills, D. A. (2017) · Nestlé Nutrition Institute Workshop series · doi:10.1159/000455399 · Cited by 56 · see citing works

Inefficient Metabolism of the Human Milk Oligosaccharides Lacto-N-tetraose and Lacto-N-neotetraose Shifts Bifidobacterium longum subsp. infantis Physiology

Özcan, E., & Sela, D. A. (2018) · Frontiers in Nutrition · doi:10.3389/fnut.2018.00046 · Cited by 56 · see citing works

Ecologies, synergies, and biological systems shaping human milk composition—a report from “Breastmilk Ecology: Genesis of Infant Nutrition (BEGIN)” Working Group 2

Smilowitz, J. T., Allen, L. H., Dallas, D. C., McManaman, J. L., Raiten, D. J., Rozga, M., Sela, D. A., Seppo, A., Williams, J. E., Young, B. E., et al. (2023) · American Journal of Clinical Nutrition · doi:10.1016/j.ajcnut.2022.11.027 · Cited by 55 · see citing works

Bovine glycomacropeptide promotes the growth of Bifidobacterium longum ssp. infantis and modulates its gene expression

O’Riordan, N., O’Callaghan, J., Buttó, L. F., Kilcoyne, M., Joshi, L., & Hickey, R. M. (2018) · Journal of Dairy Science · doi:10.3168/jds.2018-14499 · Cited by 55 · see citing works

Probiotics in the New Era of Human Milk Oligosaccharides (HMOs): HMO Utilization and Beneficial Effects of Bifidobacterium longum subsp. infantis M-63 on Infant Health

Wong, C. B., Huang, H., Ning, Y., & Xiao, J. (2024) · Microorganisms · doi:10.3390/microorganisms12051014 · Cited by 56 · see citing works

Bifidobacteria-Host Interactions—An Update on Colonisation Factors

Grimm, V., Westermann, C., & Riedel, C. U. (2014) · BioMed Research International · doi:10.1155/2014/960826 · Cited by 54 · see citing works

Lactation and Intestinal Microbiota: How Early Diet Shapes the Infant Gut

Goldsmith, F., O’Sullivan, A. M., Smilowitz, J. T., & Freeman, S. L. (2015) · Journal of Mammary Gland Biology and Neoplasia · doi:10.1007/s10911-015-9335-2 · Cited by 54 · see citing works

A Human Gut Commensal Ferments Cranberry Carbohydrates To Produce Formate

Özcan, E., Sun, J., Rowley, D. C., & Sela, D. A. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.01097-17 · Cited by 53 · see citing works

Human Milk Oligosaccharides: A Comprehensive Review towards Metabolomics

Corona, L., Lussu, A., Bosco, A., Pintus, R., Marincola, F. C., Fanos, V., & Dessì, A. (2021) · Children · doi:10.3390/children8090804 · Cited by 54 · see citing works

100K Pathogen Genome Project

Weimer, B. C. (2017) · Genome Announcements · doi:10.1128/genomea.00594-17 · Cited by 51 · see citing works

Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria

Arzamasov, A. A., Rodionov, D. A., Hibberd, M. C., Guruge, J. L., Kent, J. E., Kazanov, M. D., Leyn, S. A., Elane, M. L., Sejane, K., Fürst, A., et al. (2025) · Nature Microbiology · doi:10.1038/s41564-025-02056-x · Cited by 49 · see citing works

Precision modulation of dysbiotic adult microbiomes with a human-milk-derived synbiotic reshapes gut microbial composition and metabolites

Button, J. E., Cosetta, C. M., Reens, A. L., Brooker, S. L., Rowan-Nash, A. D., Lavin, R., Saur, R., Zheng, S., Autran, C. A., Lee, M. L., et al. (2023) · Cell Host & Microbe · doi:10.1016/j.chom.2023.08.004 · Cited by 48 · see citing works

Development of omics‐based protocols for the microbiological characterization of multi‐strain formulations marketed as probiotics: the case of VSL#3

Mora, D., Filardi, R., Arioli, S., Boeren, S. A., Aalvink, S., & de Vos, W. M. (2019) · Microbial Biotechnology · doi:10.1111/1751-7915.13476 · Cited by 45 · see citing works

Why Don't All Infants Have Bifidobacteria in Their Stool?

Tannock, G. W., Lee, P. S., Wong, K. H., & Lawley, B. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00834 · Cited by 44 · see citing works

Bifidobacterium longum subsp. infantis EVC001 Administration Is Associated with a Significant Reduction in the Incidence of Necrotizing Enterocolitis in Very Low Birth Weight Infants

Tobias, J. D., Olyaei, A. F., Laraway, B. J., Jordan, B. K., Dickinson, S., Golzarri‐Arroyo, L., Fialkowski, E., Owora, A. H., & Scottoline, B. P. (2022) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2021.12.070 · Cited by 43 · see citing works

Bosom Buddies: The Symbiotic Relationship Between Infants and<i>Bifidobacterium longum</i>ssp.<i>longum</i>and ssp.<i>infantis</i>. Genetic and Probiotic Features

Arboleya, S., Stanton, C., Ryan, C. A., Dempsey, E., & Ross, P. R. (2016) · Annual Review of Food Science and Technology · doi:10.1146/annurev-food-041715-033151 · Cited by 41 · see citing works

The Infant Gut Commensal Bacteroides dorei Presents a Generalized Transcriptional Response to Various Human Milk Oligosaccharides

Kijner, S., Cher, A., & Yassour, M. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.854122 · Cited by 42 · see citing works

Intraspecies Genomic Diversity and Long-Term Persistence of Bifidobacterium longum

Chaplin, A. V., Efimov, B. A., Smeianov, V. V., Кафарская, Л. И., Pikina, A. P., & Shkoporov, A. N. (2015) · PLoS ONE · doi:10.1371/journal.pone.0135658 · Cited by 43 · see citing works

A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596

Garrido, D. A., Ruiz‐Moyano, S., Kirmiz, N., Davis, J. C. C., Totten, S. M., Lemay, D. G., Ugalde, J. A., German, J. B., Lebrilla, C. B., & Mills, D. A. (2016) · Scientific Reports · doi:10.1038/srep35045 · Cited by 185 · see citing works

Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

Arboleya, S., Bottacini, F., Motherway, M. O., Ryan, C. A., Ross, R. P., van Sinderen, D., & Stanton, C. (2018) · BMC Genomics · doi:10.1186/s12864-017-4388-9 · Cited by 92 · see citing works

Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria

Garrido, D. A., Ruiz‐Moyano, S., Lemay, D. G., Sela, D. A., German, J. B., & Mills, D. A. (2015) · Scientific Reports · doi:10.1038/srep13517 · Cited by 189 · see citing works

Targeted High-Resolution Taxonomic Identification of Bifidobacterium longum subsp. infantis Using Human Milk Oligosaccharide Metabolizing Genes

Tso, L., Bonham, K. S., Fishbein, A., Rowland, S., & Klepac‐Ceraj, V. (2021) · Nutrients · doi:10.3390/nu13082833 · Cited by 20 · see citing works

Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota

Díaz, R., Torres-Miranda, A., Orellana, G., & Garrido, D. A. (2021) · Microorganisms · doi:10.3390/microorganisms9091906 · Cited by 28 · see citing works