Check biochemistry, genetics and molecular biology papers: citations, claims and retractions

REVIGO summarizes and visualizes long lists of gene ontology terms

Supek, F., Bošnjak, M., Škunca, N., & Šmuc, T. (2011) · PLoS ONE

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 6,264

Twenty-Year Follow-up of a Randomized Trial Comparing Total Mastectomy, Lumpectomy, and Lumpectomy plus Irradiation for the Treatment of Invasive Breast Cancer

Fisher, B., Anderson, S., Bryant, J., Margolese, R. G., Deutsch, M., Fisher, E. R., Jeong, J.-H., & Wolmark, N. (2002) · New England Journal of Medicine

Breast Cancer Treatment StudiesBreast Lesions and Carcinomas

Cited by 6,249

The gut microbiota as an environmental factor that regulates fat storage

Bäckhed, F., Ding, H., Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A., Semenkovich, C. F., & Gordon, J. I. (2004) · Proceedings of the National Academy of Sciences

Gut microbiota and healthAdipokines, Inflammation, and Metabolic Diseases

Cited by 6,245

The <tt>sva</tt> package for removing batch effects and other unwanted variation in high-throughput experiments

Leek, J. T., Johnson, W. E., Parker, H. S., Jaffe, A. E., & Storey, J. D. (2012) · Bioinformatics

Gene expression and cancer classificationSingle-cell and spatial transcriptomics

Cited by 6,231

Amino acid substitution matrices from protein blocks.

Henikoff, S., & Henikoff, J. G. (1992) · Proceedings of the National Academy of Sciences

Genomics and Phylogenetic StudiesFractal and DNA sequence analysis

Cited by 6,218

Phosphorylation and regulation of Akt/PKB by the rictor-mTOR complex

Sarbassov, D. D., Guertin, D. A., Ali, S. M., & Sabatini, D. M. (2005) · Science

PI3K/AKT/mTOR signaling in cancerMetabolism, Diabetes, and Cancer

Cited by 6,216

Hypoxia-inducible factor 1 is a basic-helix-loop-helix-PAS heterodimer regulated by cellular O2 tension.

Wang, G. L., Jiang, B. H., Rue, E. A., & Semenza, G. L. (1995) · Proceedings of the National Academy of Sciences

Cancer, Hypoxia, and MetabolismErythropoietin and Anemia Treatment

Cited by 6,212

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 6,187

Biogenesis, Secretion, and Intercellular Interactions of Exosomes and Other Extracellular Vesicles

Colombo, M., Raposo, G., & Théry, C. (2014) · Annual Review of Cell and Developmental Biology

Extracellular vesicles in diseaseCellular transport and secretion

Cited by 6,186

A general framework for estimating the relative pathogenicity of human genetic variants

Kircher, M., Witten, D. M., Jain, P., O'Roak, B. J., Cooper, G. M., & Shendure, J. (2014) · Nature Genetics

Genomics and Rare DiseasesGenetic Associations and Epidemiology

Cited by 6,183

Epigenetic programming by maternal behavior

Weaver, I. C. G., Cervoni, N., Champagne, F. A., D'Alessio, A. C., Sharma, S., Seckl, J. R., Dymov, S., Szyf, M., & Meaney, M. J. (2004) · Nature Neuroscience

Epigenetics and DNA MethylationStress Responses and Cortisol

Cited by 6,177

Obesity alters gut microbial ecology

Ley, R. E., Bäckhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., & Gordon, J. I. (2005) · Proceedings of the National Academy of Sciences

Gut microbiota and healthAdipokines, Inflammation, and Metabolic Diseases

Cited by 6,176

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

Law, C. W., Chen, Y., Shi, W., & Smyth, G. K. (2014) · Genome Biology

Gene expression and cancer classificationGenomics and Phylogenetic Studies

Cited by 6,155

Pfam: the protein families database

Finn, R. D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Heger, A., Hetherington, K., Holm, L., Mistry, J., et al. (2014) · Nucleic Acids Research

Genomics and Phylogenetic StudiesEnzyme Structure and Function

Cited by 6,148

DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development

Okano, M., Bell, D. W., Haber, D. A., & Li, E. (1999) · Cell

Epigenetics and DNA MethylationGenetic Syndromes and Imprinting

Cited by 6,143

Developmental Plasticity and Evolution

West-Eberhard, M. J. (2003) · Oxford University Press eBooks

Evolution and Genetic DynamicsAnimal Behavior and Reproduction

Cited by 6,115

AKT/PKB signaling: navigating downstream

Manning, B. D., & Cantley, L. C. (2007) · Cell

PI3K/AKT/mTOR signaling in cancerMetabolism, Diabetes, and Cancer

Cited by 6,115

New functions for the matrix metalloproteinases in cancer progression

Egeblad, M., & Werb, Z. (2002) · Nature Reviews Cancer

Protease and Inhibitor MechanismsTGF-β signaling in diseases

Cited by 6,108

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

METABRIC Group, Curtis, C., Shah, S. P., Chin, S.-F., Turashvili, G., Rueda, O. M., Dunning, M. J., Speed, D., Lynch, A. G., Samarajiwa, S., et al. (2012) · Nature

Breast Cancer Treatment StudiesCancer Genomics and Diagnostics

Cited by 6,097

The DNA-damage response in human biology and disease

Jackson, S. P., & Bartek, J. (2009) · Nature

DNA Repair MechanismsEffects of Radiation Exposure

Cited by 6,092

The human microbiome project

Turnbaugh, P. J., Ley, R. E., Hamady, M., Fraser-Liggett, C. M., Knight, R., & Gordon, J. I. (2007) · Nature

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 6,091

UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses

Chandrashekar, D. S., Bashel, B., Balasubramanya, S. A. H., Creighton, C. J., Ponce-Rodriguez, I., Chakravarthi, B. V. S. K., & Varambally, S. (2017) · Neoplasia

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 6,086

Inositol Trisphosphate, a Novel Second Messenger in Cellular Signal Transduction

Berridge, M. J., & Irvine, R. F. (1984) · Nature

Protein Kinase Regulation and GTPase SignalingCalcium signaling and nucleotide metabolism

Cited by 6,086

Biopython: freely available python tools for computational molecular biology and bioinformatics

Cock, P. J. A., Antao, T., Chang, J. T., Chapman, B. A., Cox, C. J., Dalke, A., Friedberg, I., Hamelryck, T., Kauff, F., Wilczynski, B., et al. (2009) · Bioinformatics

Genetics, Bioinformatics, and Biomedical ResearchGenomics and Phylogenetic Studies

Cited by 6,080