Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 362

The DOI matches its Crossref record; 36 of the 36 references it cites were found in a registry or an index.

Neutralizing and protective human monoclonal antibodies recognizing the N-terminal domain of the SARS-CoV-2 spike protein

Open access
Suryadevara, Naveenchandra, Shrihari, Swathi, Gilchuk, Pavlo, VanBlargan, Laura A., Binshtein, Elad, Zost, Seth J., Nargi, Rachel S., Sutton, Rachel E., Winkler, Emma S., Chen, Elaine C., Fouch, Mallorie E., Davidson, Edgar, Doranz, Benjamin J., Chen, Rita E., Shi, Pei-Yong, Carnahan, Robert H., Thackray, Larissa B., Diamond, Michael S., Crowe, James E.·2021·Cell

Published version of a preprint

Abstract

Most human monoclonal antibodies (mAbs) neutralizing SARS-CoV-2 recognize the spike (S) protein receptor-binding domain and block virus interactions with the cellular receptor angiotensin-converting enzyme 2. We describe a panel of human mAbs binding to diverse epitopes on the N-terminal domain (NTD) of S protein from SARS-CoV-2 convalescent donors and found a minority of these possessed neutralizing activity. Two mAbs (COV2-2676 and COV2-2489) inhibited infection of authentic SARS-CoV-2 and recombinant VSV/SARS-CoV-2 viruses. We mapped their binding epitopes by alanine-scanning mutagenesis and selection of functional SARS-CoV-2 S neutralization escape variants. Mechanistic studies showed that these antibodies neutralize in part by inhibiting a post-attachment step in the infection cycle. COV2-2676 and COV2-2489 offered protection either as prophylaxis or therapy, and Fc effector functions were required for optimal protection. Thus, natural infection induces a subset of potent NTD-specific mAbs that leverage neutralizing and Fc-mediated activities to protect against SARS-CoV-2 infection using multiple functional attributes.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.cell.2021.03.029

Cites

36 of 36 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 36 references

Research works printed but not linked: 50

  1. Avanzato, 2020, Case study: Prolonged infectious SARS-CoV-2 shedding from an asymptomatic immunocompromised individual with cancer, Cell, 183, 1901, 10.1016/j.cell.2020.10.049 · DOI · Paper page
  2. Bepler, 2020, Topaz-Denoise: general deep denoising models for cryoEM and cryoET, Nat. Commun., 11, 5208, 10.1038/s41467-020-18952-1 · DOI · Paper page
  3. Bepler, 2019, Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs, Nat. Methods, 16, 1153, 10.1038/s41592-019-0575-8 · DOI · Paper page
  4. Bloch, 2020, Convalescent plasma to treat COVID-19, Blood, 136, 654, 10.1182/blood.2020007714 · DOI
  5. Cao, 2020, Potent neutralizing antibodies against SARS-CoV-2 identified by high-throughput single-cell sequencing of convalescent patients’ B cells, Cell, 182, 73, 10.1016/j.cell.2020.05.025 · DOI · Paper page
  6. Case, 2020, Growth, detection, quantification, and inactivation of SARS-CoV-2, Virology, 548, 39, 10.1016/j.virol.2020.05.015 · DOI · Paper page
  7. Case, 2020, Neutralizing antibody and soluble ACE2 inhibition of a replication-competent VSV-SARS-CoV-2 and a clinical isolate of SARS-CoV-2, Cell Host Microbe, 28, 475, 10.1016/j.chom.2020.06.021 · DOI · Paper page
  8. Chen, 2020, Virus load and virus shedding of SARS-CoV-2 and their impact on patient outcomes, World J. Clin. Cases, 8, 6252, 10.12998/wjcc.v8.i24.6252 · DOI
  9. Chen, 2021, Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies, Nat. Med., 10.1038/s41591-021-01294-w · DOI · Paper page
  10. Chi, 2020, A neutralizing human antibody binds to the N-terminal domain of the Spike protein of SARS-CoV-2, Science, 369, 650, 10.1126/science.abc6952 · DOI · Paper page
  11. Chiodo, 2020, Novel ACE2-independent carbohydrate-binding of SARS-CoV-2 spike protein to host lectins and lung microbiota, bioRxiv
  12. Chng, 2015, Cleavage efficient 2A peptides for high level monoclonal antibody expression in CHO cells, MAbs, 7, 403, 10.1080/19420862.2015.1008351 · DOI · Paper page
  13. Clausen, 2020, SARS-CoV-2 infection depends on cellular heparan sulfate and ACE2, Cell, 183, 1043, 10.1016/j.cell.2020.09.033 · DOI · Paper page
  14. Davidson, 2014, A high-throughput shotgun mutagenesis approach to mapping B-cell antibody epitopes, Immunology, 143, 13, 10.1111/imm.12323 · DOI
  15. Fox, 2019, Optimal therapeutic activity of monoclonal antibodies against chikungunya virus requires Fc-FcγR interaction on monocytes, Sci. Immunol., 4, eaav5062, 10.1126/sciimmunol.aav5062 · DOI
  16. Gao, 2020, ACE2 partially dictates the host range and tropism of SARS-CoV-2, Comput. Struct. Biotechnol. J., 18, 4040, 10.1016/j.csbj.2020.11.032 · DOI
  17. Gilchuk, 2020, Integrated pipeline for the accelerated discovery of antiviral antibody therapeutics, Nat. Biomed. Eng., 4, 1030, 10.1038/s41551-020-0594-x · DOI
  18. Gilchuk, 2020, Analysis of a therapeutic antibody cocktail reveals determinants for cooperative and broad ebolavirus neutralization, Immunity, 52, 388, 10.1016/j.immuni.2020.01.001 · DOI
  19. Golden, 2020, Human angiotensin-converting enzyme 2 transgenic mice infected with SARS-CoV-2 develop severe and fatal respiratory disease, JCI Insight, 5, e142032, 10.1172/jci.insight.142032 · DOI · Paper page
  20. Halper-Stromberg, 2014, Broadly neutralizing antibodies and viral inducers decrease rebound from HIV-1 latent reservoirs in humanized mice, Cell, 158, 989, 10.1016/j.cell.2014.07.043 · DOI · Paper page
  21. Harcourt, 2020, Isolation and characterization of SARS-CoV-2 from the first US COVID-19 patient, bioRxiv
  22. Harcourt, 2020, Severe acute respiratory syndrome coronavirus 2 from patient with coronavirus disease, United States, Emerg. Infect. Dis., 26, 1266, 10.3201/eid2606.200516 · DOI · Paper page
  23. Hassan, 2020, A SARS-CoV-2 infection model in mice demonstrates protection by neutralizing antibodies, Cell, 182, 744, 10.1016/j.cell.2020.06.011 · DOI · Paper page
  24. Hsieh, 2020, Structure-based design of prefusion-stabilized SARS-CoV-2 spikes, Science, 369, 1501, 10.1126/science.abd0826 · DOI · Paper page
  25. Jones, 2020, LY-CoV555, a rapidly isolated potent neutralizing antibody, provides protection in a non-human primate model of SARS-CoV-2 infection, bioRxiv
  26. Liu, 2020, Identification of common deletions in the spike protein of severe acute respiratory syndrome coronavirus, J. Virol., 94, 10.1128/JVI.00790-20 · DOI · Paper page
  27. Laczko, 2020, A single immunization with nucleoside-modified mRNA vaccines elicits strong cellular and humoral immune responses against SARS-CoV-2 in mice, Immunity, 53, 724, 10.1016/j.immuni.2020.07.019 · DOI · Paper page
  28. Lu, 2016, Enhanced clearance of HIV-1-infected cells by broadly neutralizing antibodies against HIV-1 in vivo, Science, 352, 1001, 10.1126/science.aaf1279 · DOI · Paper page
  29. Lund, 1991, Human Fc gamma RI and Fc gamma RII interact with distinct but overlapping sites on human IgG, J. Immunol., 147, 2657, 10.4049/jimmunol.147.8.2657 · DOI · Paper page
  30. Mukherjee, 2016, Enhancing dengue virus maturation using a stable furin over-expressing cell line, Virology, 497, 33, 10.1016/j.virol.2016.06.022 · DOI
  31. Mulligan, 2020, Phase I/II study of COVID-19 RNA vaccine BNT162b1 in adults, Nature, 586, 589, 10.1038/s41586-020-2639-4 · doi:10.1038/s41586-020-2639-4 · Paper page
  32. Ohi, 2004, Negative staining and image classification - Powerful tools in modern electron microscopy, Biol. Proced. Online, 6, 23, 10.1251/bpo70 · DOI · Paper page
  33. Oladunni, 2020, Lethality of SARS-CoV-2 infection in K18 human angiotensin-converting enzyme 2 transgenic mice, Nat. Commun., 11, 6122, 10.1038/s41467-020-19891-7 · DOI · Paper page
  34. Oude Munnink, 2021, Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans, Science, 371, 172, 10.1126/science.abe5901 · DOI · Paper page
  35. Pettersen, 2004, UCSF Chimera--a visualization system for exploratory research and analysis, J. Comput. Chem., 25, 1605, 10.1002/jcc.20084 · DOI · Paper page
  36. Piccoli, 2020, Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology, Cell, 183, 1024, 10.1016/j.cell.2020.09.037 · DOI · Paper page
  37. Pinto, 2020, Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody, Nature, 583, 290, 10.1038/s41586-020-2349-y · DOI · Paper page
  38. Punjani, 2017, cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination, Nat. Methods, 14, 290, 10.1038/nmeth.4169 · DOI · Paper page
  39. Schäfer, 2021, Antibody potency, effector function, and combinations in protection and therapy for SARS-CoV-2 infection in vivo, J. Exp. Med., 218, e20201993, 10.1084/jem.20201993 · DOI · Paper page
  40. Smith, 2020, Landscape and selection of vaccine epitopes in SARS-CoV-2, bioRxiv
  41. Smith, 2012, Persistence of circulating B memory cell clones with potential for dengue virus disease enhancement for decades following infection, J. Virol., 86, 2665, 10.1128/JVI.06335-11 · DOI
  42. ter Meulen, 2006, Human monoclonal antibody combination against SARS coronavirus: synergy and coverage of escape mutants, PLoS Med., 3, e237, 10.1371/journal.pmed.0030237 · DOI · Paper page
  43. Voss, 2020, Prevalent, protective, and convergent IgG recognition of SARS-CoV-2 non-RBD spike epitopes in COVID-19 convalescent plasma, bioRxiv
  44. Wang, 2020, A human monoclonal antibody blocking SARS-CoV-2 infection, Nat. Commun., 11, 2251, 10.1038/s41467-020-16256-y · DOI · Paper page
  45. Wec, 2020, Broad neutralization of SARS-related viruses by human monoclonal antibodies, Science, 369, 731, 10.1126/science.abc7424 · DOI · Paper page
  46. Wines, 2000, The IgG Fc contains distinct Fc receptor (FcR) binding sites: the leukocyte receptors Fc gamma RI and Fc gamma RIIa bind to a region in the Fc distinct from that recognized by neonatal FcR and protein A, J. Immunol., 164, 5313, 10.4049/jimmunol.164.10.5313 · DOI
  47. Wu, 2020, An alternative binding mode of IGHV3-53 antibodies to the SARS-CoV-2 receptor binding domain, Cell Rep., 33, 108274, 10.1016/j.celrep.2020.108274 · DOI
  48. Zhang, 2020, A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2, bioRxiv
  49. Zhou, 2019, Structural definition of a neutralization epitope on the N-terminal domain of MERS-CoV spike glycoprotein, Nat. Commun., 10, 3068, 10.1038/s41467-019-10897-4 · DOI
  50. Zost, 2020, Rapid isolation and profiling of a diverse panel of human monoclonal antibodies targeting the SARS-CoV-2 spike protein, Nat. Med., 26, 1422, 10.1038/s41591-020-0998-x · DOI · Paper page

Cited by

See all 362

Metadata

Authors
Suryadevara, N., Shrihari, S., Gilchuk, P., VanBlargan, L. A., Binshtein, E., Zost, S. J., Nargi, R. S., Sutton, R. E., Winkler, E. S., Chen, E. C., Fouch, M. E., Davidson, E., Doranz, B. J., Chen, R. E., Shi, P.-Y., Carnahan, R. H., Thackray, L. B., Diamond, M. S., & Crowe, J. E.
Venue
Cell
Publisher
Elsevier BV
Published
2021-04
Volume
184
Issue
9
Pages
2316-2331.e15
ISSN
0092-8674 (ISSN-L)
OpenAlex
W3139036184
Cited by
362
References
36
FWCI
24.80
Type
journal article
Language
en
Open access
bronze
Funders
  • DARPA
  • NIAID DMID

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: Neutralizing and protective human monoclonal antibodies recognizing the N-terminal domain of the SARS-CoV-2 spike protein. https://app.cochat.ai/papers/10.1016/j.cell.2021.03.029
The paper
Suryadevara, N., Shrihari, S., Gilchuk, P., VanBlargan, L. A., Binshtein, E., Zost, S. J., Nargi, R. S., Sutton, R. E., Winkler, E. S., Chen, E. C., Fouch, M. E., Davidson, E., Doranz, B. J., Chen, R. E., Shi, P.-Y., Carnahan, R. H., Thackray, L. B., Diamond, M. S., & Crowe, J. E. (2021). Neutralizing and protective human monoclonal antibodies recognizing the N-terminal domain of the SARS-CoV-2 spike protein. Cell. https://doi.org/10.1016/j.cell.2021.03.029

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.