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The promise and peril of chemical probes
Open accessAbstract
Chemical probes are powerful reagents with increasing impacts on biomedical research. However, probes of poor quality or that are used incorrectly generate misleading results. To help address these shortcomings, we will create a community-driven wiki resource to improve quality and convey current best practice.
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Role of AMP-Activated Protein Kinase in Mechanism of Metformin Action
Zhou, G., Myers, R., Li, Y., Chen, Y., Shen, X., Fenyk-Melody, J., Wu, M., Ventre, J., Doebber, T., Fujii, N., et al. (2001) · Journal of Clinical Investigation · doi:10.1172/jci13505 · Cited by 5,652
Specificity and mechanism of action of some commonly used protein kinase inhibitors
DAVIES, S. P., Reddy, H., Caivano, M., & Cohen, P. (2000) · Biochemical Journal · doi:10.1042/0264-6021:3510095 · Cited by 4,366
Self-citationVlahos, C. J., Matter, W. F., Hui, K. Y., & Brown, R. F. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)37680-9 · Cited by 3,248
Hidaka, H., Inagaki, M., Kawamoto, S., & Sasaki, Y. (1984) · Biochemistry · doi:10.1021/bi00316a032 · Cited by 2,688
Staurosporine, a potent inhibitor of phospholipidCa++dependent protein kinase
Tamaoki, T., Nomoto, H., TAKAHASHI, I., Kato, Y., Morimoto, M., & Tomita, F. (1986) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(86)90008-2 · Cited by 2,452
Monitoring Drug Target Engagement in Cells and Tissues Using the Cellular Thermal Shift Assay
Molina, D. M., Jafari, R., Ignatushchenko, M., Seki, T., Larsson, E. A., Dan, C., Sreekumar, L., Cao, Y., & Nordlund, P. (2013) · Science · doi:10.1126/science.1233606 · Cited by 2,261
Click Chemistry for Drug Development and Diverse Chemical–Biology Applications
Prakasam, T., Matosiuk, D., & Jóźwiak, K. (2013) · Chemical Reviews · doi:10.1021/cr200409f · Cited by 1,933
Valproic acid defines a novel class of HDAC inhibitors inducing differentiation of transformed cells
Göttlicher, M., Minucci, S., Zhu, P., Krämer, O. H., Schimpf, A., Giavara, S., Sleeman, J. P., Coco, F. L., Nervi, C., Pelicci, P. G., et al. (2001) · The EMBO Journal · doi:10.1093/emboj/20.24.6969 · Cited by 1,930
Targeting bromodomains: epigenetic readers of lysine acetylation
Filippakopoulos, P., & Knapp, S. (2014) · Nature Reviews Drug Discovery · doi:10.1038/nrd4286 · Cited by 1,298
Self-citationDorsomorphin inhibits BMP signals required for embryogenesis and iron metabolism
Yu, P. B., Hong, C. C., Sachidanandan, C., Babitt, J. L., Deng, D. Y., Hoyng, S. A., Lin, H. Y.-F., Bloch, K. D., & Peterson, R. T. (2007) · Nature Chemical Biology · doi:10.1038/nchembio.2007.54 · Cited by 1,059
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Natural allosteric modulators and their biological targets: molecular signatures and mechanisms
Bruder, M., Polo, G., & Trivella, D. B. B. (2020) · Natural Product Reports · doi:10.1039/c9np00064j · Cited by 32
Gradl, S., Steuber, H., Weiske, J., Szewczyk, M., Schmees, N., Siegel, S., Stoeckigt, D., Christ, C. D., Li, F., Organ, S. L., et al. (2021) · SLAS DISCOVERY · doi:10.1177/24725552211019409 · Cited by 31
Self-citationRobust proteome profiling of cysteine-reactive fragments using label-free chemoproteomics
Biggs, G. S., Cawood, E. E., Vuorinen, A., McCarthy, W. J., Wilders, H., Riziotis, I. G., van der Zouwen, A. J., Pettinger, J., Nightingale, L., Chen, P., et al. (2025) · Nature Communications · doi:10.1038/s41467-024-55057-5 · Cited by 36
Targeting Pim Kinases and DAPK3 to Control Hypertension
Carlson, D. A., Singer, M. R., Sutherland, C., Redondo, C., Alexander, L. T., Hughes, P. F., Knapp, S., Gurley, S. B., Sparks, M. A., MacDonald, J. A., et al. (2018) · Cell chemical biology · doi:10.1016/j.chembiol.2018.06.006 · Cited by 29
Self-citationEU-OPENSCREEN: A Novel Collaborative Approach to Facilitate Chemical Biology
Brennecke, P., Rasiņa, D., Aubi, O., Herzog, K., Landskron, J., Cautain, B., Vicente, F., Quintana, J. R., Mestres, J., Stechmann, B., et al. (2019) · SLAS DISCOVERY · doi:10.1177/2472555218816276 · Cited by 30
Propargylic Se-adenosyl- l -selenomethionine: A Chemical Tool for Methylome Analysis
Sohtome, Y., Shimazu, T., Shinkai, Y., & Sodeoka, M. (2021) · Accounts of Chemical Research · doi:10.1021/acs.accounts.1c00395 · Cited by 30
Image-Based Annotation of Chemogenomic Libraries for Phenotypic Screening
Tjaden, A., Chaikuad, A., Kowarz, E., Marschalek, R., Knapp, S., Schröder, M., & Müller, S. (2022) · Molecules · doi:10.3390/molecules27041439 · Cited by 30
Self-citationStructural features and inhibitors of bromodomains
Meslamani, J. E., Smith, S. G., Sánchez, R., & Zhou, M. (2016) · Drug Discovery Today Technologies · doi:10.1016/j.ddtec.2016.09.001 · Cited by 32
Yun, J., Hengst, J., Dick, T., Sharma, A. K., Doi, K., Hegde, S., Tan, S., Geffert, L., Fox, T., Sharma, A., et al. (2017) · Cancer translational medicine · doi:10.4103/ctm.ctm_7_17 · Cited by 30
Challenges in validating candidate therapeutic targets in cancer
Settleman, J. E., Sawyers, C. L., & Hunter, T. R. (2018) · eLife · doi:10.7554/elife.32402 · Cited by 32
The transcriptional repressor REV-ERB as a novel target for disease
Úriz, A., Date, A., Ang, H. Y.-K., Ali, S., Brady, H. J. M., & Fuchter, M. J. (2020) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2020.127395 · Cited by 29
Discovery of a Novel Class of Covalent Dual Inhibitors Targeting the Protein Kinases BMX and BTK
Förster, M., Liang, X. J., Schröder, M., Gerstenecker, S., Chaikuad, A., Knapp, S., Laufer, S., & Gehringer, M. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21239269 · Cited by 29
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Westphal, M. V., Sarott, R. C., Zirwes, E. A., Osterwald, A., Guba, W., Ullmer, C., Grether, U., & Carreira, E. M. (2020) · Chemistry - A European Journal · doi:10.1002/chem.201904584 · Cited by 27
Proj, M., Knez, D., Sosič, I., & Gobec, S. (2022) · Drug Discovery Today · doi:10.1016/j.drudis.2022.03.008 · Cited by 27
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Yang, X., Dickmander, R. J., Bayati, A., Taft-Benz, S., Smith, J. L., Wells, C. I., Madden, E. A., Brown, J. W., Lenarcic, E. M., Yount, B. L., et al. (2022) · ACS Chemical Biology · doi:10.1021/acschembio.2c00378 · Cited by 29
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Barghout, S. H., Machado, R. A. C., & Baršytė-Lovejoy, D. (2022) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2022.194840 · Cited by 29
Göricke, F., Vu, V., Smith, L., Scheib, U., Böhm, R., Akkılıç, N., Wohlfahrt, G., Weiske, J., Bömer, U., Brzezinka, K., et al. (2023) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c01933 · Cited by 30
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Volkamer, A., Eid, S., Turk, S., Rippmann, F., & Fulle, S. (2016) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.5b00627 · Cited by 27
Chemical probes targeting epigenetic proteins: Applications beyond oncology
Ackloo, S. Z., Brown, P. J., & Müller, S. (2017) · Epigenetics · doi:10.1080/15592294.2017.1279371 · Cited by 27
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Kooistra, A. J., & Volkamer, A. (2017) · Annual reports in medicinal chemistry · doi:10.1016/bs.armc.2017.08.001 · Cited by 27
Collins, R. J., Lee, H.-A., Jones, D. H., Elkins, J. M., Gillespie, J. A., Thomas, C., Baldwin, A. G., Jones, K. M., Waters, L., Paine, M., et al. (2022) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c00751 · Cited by 26
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Kang, H. J., Minamimoto, T., Wess, J., & Roth, B. L. (2023) · Nature Reviews Methods Primers · doi:10.1038/s43586-023-00276-1 · Cited by 27
Self-citationSeashore-Ludlow, B. A., & Lundbäck, T. (2016) · SLAS DISCOVERY · doi:10.1177/1087057116659256 · Cited by 26
Wang, Y., Wang, L., Hu, T., Wang, F., Han, Z., Yin, Z., Ge, X., Xie, K., & Lei, P. (2020) · Neurological Research · doi:10.1080/01616412.2020.1747717 · Cited by 26
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Vu, V., Szewczyk, M. M., Nie, D. Y., Arrowsmith, C. H., & Baršytė-Lovejoy, D. (2022) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-032620-105344 · Cited by 26
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Wu, K., Huynh, K. Q., Lu, I., Moustakim, M., Miao, H., Yu, C., Haeusgen, M. J., Hopkins, B. D., Huang, L., Zheng, N., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2007328118 · Cited by 26
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Lamb, D. J., Wollin, S. L., Schnapp, A., Bischoff, D., Erb, K. J., Bouyssou, T., Guilliard, B., Strasser, C., Wex, E., Blum, S., et al. (2016) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1124/jpet.116.233155 · Cited by 25
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Zhang, K., Wei, J., Zhang, S.-Y., Fei, L., Guo, L., Liu, X., Ji, Y., Chen, W., Ciamponi, F. E., Chen, W., et al. (2024) · Cell chemical biology · doi:10.1016/j.chembiol.2024.08.003 · Cited by 24
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Möller, T., & Boddeke, H. W. G. M. (2016) · Glia · doi:10.1002/glia.22993 · Cited by 24
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Seashore-Ludlow, B. A., Axelsson, H., Almqvist, H., Dahlgren, B., Jönsson, M., & Lundbäck, T. (2018) · Biochemistry · doi:10.1021/acs.biochem.8b01057 · Cited by 24
Wortmann, L., Lindenthal, B., Muhn, P., Walter, A., Nubbemeyer, R., Heldmann, D., Sobek, L., Morandi, F., Schrey, A. K., Moosmayer, D., et al. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b01382 · Cited by 23
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Self-citationReinecke, M., Heinzlmeir, S., Wilhelm, M., Médard, G., Klaeger, S., & Küster, B. (2019) · Methods and principles in medicinal chemistry · doi:10.1002/9783527818242.ch4 · Cited by 23
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Wang, C., Zou, P., Yang, C., Liu, L., Cheng, L., He, X., Zhang, L., Zhang, Y., Jiang, H., & Chen, P. R. (2019) · Science China Life Sciences · doi:10.1007/s11427-019-9823-1 · Cited by 23
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Pasquer, Q. T. L., Tsakoumagkos, I. A., & Hoogendoorn, S. (2020) · Molecules · doi:10.3390/molecules25235702 · Cited by 21
Hegedüs, Z., Hóbor, F., Shoemark, D. K., Celis, S., Lian, L., Trinh, C. H., Sessions, R. B., Edwards, T. A., & Wilson, A. J. (2021) · Chemical Science · doi:10.1039/d0sc05694d · Cited by 21
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Xie, Y., Dahlin, J. L., Oakley, A. J., Casarotto, M. G., Philip G. Board, & Baell, J. B. (2018) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b00318 · Cited by 21
Self-citationBailey, C. P., Figueroa, M., Mohiuddin, S., Zaky, W. T., & Chandra, J. (2018) · Bioengineering · doi:10.3390/bioengineering5040088 · Cited by 21
D’Alessandro, P. L., Buschmann, N., Kaufmann, M., Furet, P., Baysang, F., Brunner, R., Marzinzik, A. L., Vorherr, T. E., Stachyra, T., Ottl, J., et al. (2016) · Angewandte Chemie International Edition · doi:10.1002/anie.201608568 · Cited by 21
Shi, Y. H., Bray, W. M., Smith, A. J., Zhou, W., Calaoagan, J. M., Lagisetti, C., Sambucetti, L. C., Crews, P., Lokey, R. S., & Webb, T. R. (2020) · PLoS ONE · doi:10.1371/journal.pone.0233672 · Cited by 24
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Lu, Q., Livi, G. P., Modha, S. S., Yusa, K., Macarrón, R., & Dow, D. J. (2017) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2017.1317244 · Cited by 21
Reynoso-Moreno, I., Chicca, A., Flores-Soto, M. E., Paredes, J. M. V., & Gertsch, J. (2018) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2018.00180 · Cited by 20
Taylor, A. P., Swewczyk, M., Kennedy, S., Trush, V. V., Wu, H., Zeng, H., Dong, A., de Freitas, R. F., Tatlock, J. H., Kumpf, R. A., et al. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b00112 · Cited by 19
Self-citationEmmerich, C. H., & Harris, C. M. (2019) · Handbook of experimental pharmacology · doi:10.1007/164_2019_284 · Cited by 20
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Metadata
- Authors
- Arrowsmith, C. H., Audia, J. E., Austin, C., Baell, J., Bennett, J., Blagg, J., Bountra, C., Brennan, P. E., Brown, P. J., Bunnage, M. E., Buser-Doepner, C., Campbell, R. M., Carter, A. J., Cohen, P., Copeland, R. A., Cravatt, B., Dahlin, J. L., Dhanak, D., Edwards, A. M., Frederiksen, M., Frye, S. V., Gray, N., Grimshaw, C. E., Hepworth, D., Howe, T., Huber, K. V. M., Jin, J., Knapp, S., Kotz, J. D., Kruger, R. G., Lowe, D., Mader, M. M., Marsden, B., Mueller-Fahrnow, A., Müller, S., O'Hagan, R. C., Overington, J. P., Owen, D. R., Rosenberg, S. H., Ross, R., Roth, B., Schapira, M., Schreiber, S. L., Shoichet, B., Sundström, M., Superti-Furga, G., Taunton, J., Toledo-Sherman, L., Walpole, C., Walters, M. A., Willson, T. M., Workman, P., Young, R. N., & Zuercher, W. J.
- Affiliations
- University of Toronto (CA)
- Constellation Pharmaceuticals (United States) (US)
- National Institutes of Health (US)
- Monash University (AU)
- Merck & Co., Inc., Rahway, NJ, USA (United States) (US)
- Institute of Cancer Research (GB)
- University of Oxford (GB)
- Structural Genomics Consortium (CA)
- Pfizer (United States) (US)
- Eli Lilly (United States) (US)
- Boehringer Ingelheim (Germany) (DE)
- University of Dundee (GB)
- Epizyme (United States) (US)
- Scripps Research Institute (US)
- Mayo Clinic (US)
- Novartis (Switzerland) (CH)
- University of North Carolina at Chapel Hill (US)
- Harvard University (US)
- Janssen (United Kingdom) (GB)
- Austrian Academy of Sciences (AT)
- Icahn School of Medicine at Mount Sinai (US)
- Broad Institute (US)
- GlaxoSmithKline (United States) (US)
- Vertex Pharmaceuticals (United States) (US)
- European Bioinformatics Institute (GB)
- AbbVie (United States) (US)
- University of California, San Francisco (US)
- Karolinska University Hospital (SE)
- Howard Hughes Medical Institute (US)
- University of Minnesota (US)
- Simon Fraser University (CA)
- Corresponding author
- Edwards, Aled M
- ORCID
- Arrowsmith, Cheryl H
- Audia, James E
- Austin, Christopher
- Baell, Jonathan
- Blagg, Julian
- Bountra, Chas
- Brennan, Paul E
- Brown, Peter J
- Bunnage, Mark E
- Campbell, Robert M
- Carter, Adrian J
- Cohen, Philip
- Copeland, Robert A
- Dahlin, Jayme L
- Edwards, Aled M
- Frederiksen, Mathias
- Frye, Stephen V
- Gray, Nathanael
- Grimshaw, Charles E
- Hepworth, David
- Huber, Kilian V M
- Jin, Jian
- Knapp, Stefan
- Kotz, Joanne D
- Mader, Mary M
- Marsden, Brian
- Müller, Susanne
- Overington, John P
- Owen, Dafydd R
- Ross, Ruth
- Roth, Bryan
- Schapira, Matthieu
- Schreiber, Stuart L
- Shoichet, Brian
- Sundström, Michael
- Taunton, Jack
- Walters, Michael A
- Willson, Timothy M
- Workman, Paul
- Young, Robert N
- Zuercher, William J
- Venue
- Nature Chemical Biology
- Published
- 2015-07-21
- Volume
- 11
- Issue
- 8
- Pages
- 536-541
- ISSN
- 1552-4450 (ISSN-L)
- 1552-4469
- PMC
- PMC4706458
- OpenAlex
- W1516646538
- Cited by
- 839
- References
- 41
- Citations by year
- 2026: 37 · 2025: 57 · 2024: 62 · 2023: 67 · 2022: 67 · 2021: 81 · 2020: 86 · 2019: 75 · 2018: 79 · 2017: 98 · 2016: 103 · 2015: 25
- FWCI
- 48.56
- Type
- journal article
- Language
- en
- Update notices
- erratum (2015-10-20)
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Nature Chemical Biology (publishedVersion, other-oa)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Carolina Digital Repository (University of North Carolina at Chapel Hill) (submittedVersion)
- Discovery Research Portal (University of Dundee) (submittedVersion, other-oa)
- Deakin Research Online (Deakin University) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Figshare (submittedVersion, cc-by)
- UNC Libraries
- Funders
- Eli Lilly and Company
- Pfizer
- GlaxoSmithKline
- Harvard University
- University of Dundee
- Wellcome Trust (106169/Z/14/Z, 104104, 106169, 104104/A/14/Z, 100294)
- Constellation Pharmaceuticals
- Cancer Research UK (11566)
- University of Oxford
- Monash University
- Österreichischen Akademie der Wissenschaften
- University of Toronto
- National Institutes of Health
- University of North Carolina at Chapel Hill
- Novartis Institutes for BioMedical Research
- Medical Research Council (MR/K000985/1)
- National Institute of General Medical Sciences (R01GM103893)
- Janssen Research and Development
- National Center for Advancing Translational Sciences
- UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill
- Topics
- Physical Sciences › Chemistry › Organic Chemistry › Click Chemistry and Applications
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Synthesis and Analysis
- Keywords
- chemical probes, best practices, wikis, research reproducibility, chemical biology
- MeSH terms
- Humans, Molecular Weight, Sensitivity and Specificity, Molecular Probes, Intellectual Property, Internet, Information Dissemination, Biomedical Research, Small Molecule Libraries
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