Fast gapped-read alignment with Bowtie 2

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Items 101–200 of 909

1. CEL-seq2: sensitive highly-multiplexed single-cell RNA-Seq
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2. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
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3. Strains, functions and dynamics in the expanded Human Microbiome Project
   Lloyd-Price, Jason, Mahurkar, Anup, Rahnavard, Gholamali, Crabtree, Jonathan, Orvis, Joshua, Hall, A. Brantley, Brady, Arthur, Creasy, Heather H., McCracken, Carrie, Giglio, Michelle G. et al. · 2017 · Nature
4. Impact of cytosine methylation on DNA binding specificities of human transcription factors
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5. Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors
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6. A draft human pangenome reference.
   Liao, Wen-Wei, Asri, Mobin, Ebler, Jana, Doerr, Daniel, Haukness, Marina, Hickey, Glenn, Lu, Shuangjia, Lucas, Julian K., Monlong, Jean, Abel, Haley J. et al. · 2023 · Nature
7. Biogeography and individuality shape function in the human skin metagenome
   NISC Comparative Sequencing Program, Oh, Julia, Byrd, Allyson L., Deming, Clay, Conlan, Sean, Kong, Heidi H., Segre, Julia A. · 2014 · Nature
8. An environment-dependent transcriptional network specifies human microglia identity
   Gosselin, David, Skola, Dylan, Coufal, Nicole G., Holtman, Inge R., Schlachetzki, Johannes C. M., Sajti, Eniko, Jaeger, Baptiste N., O’Connor, Carolyn, Fitzpatrick, Conor, Pasillas, Martina P. et al. · 2017 · Science
9. Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function
   Piwecka, Monika, Glažar, Petar, Hernandez-Miranda, Luis R., Memczak, Sebastian, Wolf, Susanne A., Rybak-Wolf, Agnieszka, Filipchyk, Andrei, Klironomos, Filippos, Cerda Jara, Cledi Alicia, Fenske, Pascal et al. · 2017 · Science
10. Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
    Camp, J. Gray, Badsha, Farhath, Florio, Marta, Kanton, Sabina, Gerber, Tobias, Wilsch-Bräuninger, Michaela, Lewitus, Eric, Sykes, Alex, Hevers, Wulf, Lancaster, Madeline et al. · 2015 · Proceedings of the National Academy of Sciences
11. Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT
    Suez, Jotham, Zmora, Niv, Zilberman-Schapira, Gili, Mor, Uria, Dori-Bachash, Mally, Bashiardes, Stavros, Zur, Maya, Regev-Lehavi, Dana, Ben-Zeev Brik, Rotem, Federici, Sara et al. · 2018 · Cell
12. Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
    Shekhar, Karthik, Lapan, Sylvain W., Whitney, Irene E., Tran, Nicholas M., Macosko, Evan Z., Kowalczyk, Monika, Adiconis, Xian, Levin, Joshua Z., Nemesh, James, Goldman, Melissa et al. · 2016 · Cell
13. Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
    Sharon, Gil, Cruz, Nikki Jamie, Kang, Dae-Wook, Gandal, Michael J., Wang, Bo, Kim, Young-Mo, Zink, Erika M., Casey, Cameron P., Taylor, Bryn C., Lane, Christianne J. et al. · 2019 · Cell
14. Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
    Shao, Yan, Forster, Samuel C., Tsaliki, Evdokia, Vervier, Kevin, Strang, Angela, Simpson, Nandi, Kumar, Nitin, Stares, Mark D., Rodger, Alison, Brocklehurst, Peter et al. · 2019 · Nature
15. Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
    Thomas, Andrew Maltez, Manghi, Paolo, Asnicar, Francesco, Pasolli, Edoardo, Armanini, Federica, Zolfo, Moreno, Beghini, Francesco, Manara, Serena, Karcher, Nicolai, Pozzi, Chiara et al. · 2019 · Nature Medicine
16. Probiotics, gut microbiota, and their influence on host health and disease
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17. Towards precision medicine
    Ashley, Euan A. · 2016 · Nature Reviews Genetics
18. Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements
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19. A natural killer–dendritic cell axis defines checkpoint therapy–responsive tumor microenvironments
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20. RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach
    Poore, Gregory D., Kopylova, Evguenia, Zhu, Qiyun, Carpenter, Carolina, Fraraccio, Serena, Wandro, Stephen, Kosciolek, Tomasz, Janssen, Stefan, Metcalf, Jessica, Song, Se Jin et al. · 2020 · Nature · Retracted
21. Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
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22. An inhibitor of oxidative phosphorylation exploits cancer vulnerability
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23. Microbial strain-level population structure and genetic diversity from metagenomes
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24. Sensitive tumour detection and classification using plasma cell-free DNA methylomes
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25. Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance
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26. Alarming antibody evasion properties of rising SARS-CoV-2 BQ and XBB subvariants
    Wang, Qian, Iketani, Sho, Li, Zhiteng, Liu, Liyuan, Guo, Yicheng, Huang, Yiming, Bowen, Anthony D., Liu, Michael, Wang, Maple, Yu, Jian et al. · 2023 · Cell
27. Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response
    Spencer, Christine N., McQuade, Jennifer L., Gopalakrishnan, Vancheswaran, McCulloch, John A., Vetizou, Marie, Cogdill, Alexandria P., Khan, Md A. Wadud, Zhang, Xiaotao, White, Michael G., Peterson, Christine B. et al. · 2021 · Science
28. Chromatin states define tumour-specific T cell dysfunction and reprogramming
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29. Analytical and clinical validation of a microbial cell-free DNA sequencing test for infectious disease
    Blauwkamp, Timothy A., Thair, Simone, Rosen, Michael J., Blair, Lily, Lindner, Martin S., Vilfan, Igor D., Kawli, Trupti, Christians, Fred C., Venkatasubrahmanyam, Shivkumar, Wall, Gregory D. et al. · 2019 · Nature Microbiology
30. Anti-tumour immunity controlled through mRNA m6A methylation and YTHDF1 in dendritic cells
    Han, Dali, Liu, Jun, Chen, Chuanyuan, Dong, Lihui, Liu, Yi, Chang, Renbao, Huang, Xiaona, Liu, Yuanyuan, Wang, Jianying, Dougherty, Urszula et al. · 2019 · Nature
31. Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data
    Pliner, Hannah A., Packer, Jonathan S., McFaline-Figueroa, José L., Cusanovich, Darren A., Daza, Riza M., Aghamirzaie, Delasa, Srivatsan, Sanjay, Qiu, Xiaojie, Jackson, Dana, Minkina, Anna et al. · 2018 · Molecular Cell
32. The cohesin release factor WAPL restricts chromatin loop extension
    Haarhuis, Judith H.I., van der Weide, Robin H., Blomen, Vincent A., Yáñez-Cuna, J. Omar, Amendola, Mario, van Ruiten, Marjon S., Krijger, Peter H.L., Teunissen, Hans, Medema, René H., van Steensel, Bas et al. · 2017 · Cell
33. Identification of essential genes for cancer immunotherapy
    Patel, Shashank J., Sanjana, Neville E., Kishton, Rigel J., Eidizadeh, Arash, Vodnala, Suman K., Cam, Maggie, Gartner, Jared J., Jia, Li, Steinberg, Seth M., Yamamoto, Tori N. et al. · 2017 · Nature
34. Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
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35. Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism
    Scheiman, Jonathan, Luber, Jacob M., Chavkin, Theodore A., MacDonald, Tara, Tung, Angela, Pham, Loc-Duyen, Wibowo, Marsha C., Wurth, Renee C., Punthambaker, Sukanya, Tierney, Braden T. et al. · 2019 · Nature Medicine
36. A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility
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37. Role of TP53 mutations in the origin and evolution of therapy-related acute myeloid leukaemia
    Wong, Terrence N., Ramsingh, Giridharan, Young, Andrew L., Miller, Christopher A., Touma, Waseem, Welch, John S., Lamprecht, Tamara L., Shen, Dong, Hundal, Jasreet, Fulton, Robert S. et al. · 2015 · Nature
38. American Gut: an Open Platform for Citizen-Science Microbiome Research
    McDonalda, Daniel, Hyde, Embriette, Debelius, Justine W., Morton, James T., Gonzalez, Antonio, Ackermann, Gail, Aksenov, Alexander A., Behsaz, Bahar, Brennan, Caitriona, Chen, Yingfeng et al. · 2018
39. Multi-omics analysis identifies ATF4 as a key regulator of the mitochondrial stress response in mammals
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40. Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
    Farrell, Jeffrey A., Wang, Yiqun, Riesenfeld, Samantha J., Shekhar, Karthik, Regev, Aviv, Schier, Alexander F. · 2018 · Science
41. The microbiome of uncontacted Amerindians
    Clemente, Jose C., Pehrsson, Erica C., Blaser, Martin J., Sandhu, Kuldip, Gao, Zhan, Wang, Bin, Magris, Magda, Hidalgo, Glida, Contreras, Monica, Noya-Alarcón, Óscar et al. · 2015 · Science Advances
42. ChIP‐Atlas: a data‐mining suite powered by full integration of public ChIP‐seq data
    Oki, Shinya, Ohta, Tazro, Shioi, Go, Hatanaka, Hideki, Ogasawara, Osamu, Okuda, Yoshihiro, Kawaji, Hideya, Nakaki, Ryo, Sese, Jun, Meno, Chikara · 2018 · The EMBO Reports
43. Classification of low quality cells from single-cell RNA-seq data
    Ilicic, Tomislav, Kim, Jong Kyoung, Kolodziejczyk, Aleksandra A., Bagger, Frederik Otzen, McCarthy, Davis James, Marioni, John C., Teichmann, Sarah A. · 2016 · Genome Biology
44. Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease
    Kuscu, Cem, Arslan, Sevki, Singh, Ritambhara, Thorpe, Jeremy, Adli, Mazhar · 2014 · Nature Biotechnology
45. In vivo CRISPR base editing of PCSK9 durably lowers cholesterol in primates
    Musunuru, Kiran, Chadwick, Alexandra C., Mizoguchi, Taiji, Garcia, Sara P., DeNizio, Jamie E., Reiss, Caroline W., Wang, Kui, Iyer, Sowmya, Dutta, Chaitali, Clendaniel, Victoria et al. · 2021 · Nature
46. Cell-cycle dynamics of chromosomal organization at single-cell resolution
    Nagano, Takashi, Lubling, Yaniv, Várnai, Csilla, Dudley, Carmel, Leung, Wing, Baran, Yael, Mendelson Cohen, Netta, Wingett, Steven, Fraser, Peter, Tanay, Amos · 2017 · Nature
47. Aerobic glycolysis promotes T helper 1 cell differentiation through an epigenetic mechanism
    Peng, Min, Yin, Na, Chhangawala, Sagar, Xu, Ke, Leslie, Christina S., Li, Ming O. · 2016 · Science
48. Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15
    Han, Ting, Goralski, Maria, Gaskill, Nicholas, Capota, Emanuela, Kim, Jiwoong, Ting, Tabitha C., Xie, Yang, Williams, Noelle S., Nijhawan, Deepak · 2017 · Science
49. Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing
    Nuñez, James K., Chen, Jin, Pommier, Greg C., Cogan, J. Zachery, Replogle, Joseph M., Adriaens, Carmen, Ramadoss, Gokul N., Shi, Quanming, Hung, King L., Samelson, Avi J. et al. · 2021 · Cell
50. Roux-en-Y Gastric Bypass and Vertical Banded Gastroplasty Induce Long-Term Changes on the Human Gut Microbiome Contributing to Fat Mass Regulation
    Tremaroli, Valentina, Karlsson, Fredrik, Werling, Malin, Ståhlman, Marcus, Kovatcheva-Datchary, Petia, Olbers, Torsten, Fändriks, Lars, le Roux, Carel W., Nielsen, Jens, Bäckhed, Fredrik · 2015 · Cell Metabolism
51. Neuron-Astrocyte Metabolic Coupling Protects against Activity-Induced Fatty Acid Toxicity
    Ioannou, Maria S., Jackson, Jesse, Sheu, Shu-Hsien, Chang, Chi-Lun, Weigel, Aubrey V., Liu, Hui, Pasolli, H. Amalia, Xu, C. Shan, Pang, Song, Matthies, Doreen et al. · 2019 · Cell
52. Environmental factors shaping the gut microbiome in a Dutch population
    Gacesa, R., Kurilshikov, A., Vich Vila, A., Sinha, T., Klaassen, M. A. Y., Bolte, L. A., Andreu-Sánchez, S., Chen, L., Collij, V., Hu, S. et al. · 2022 · Nature
53. Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor
    Enuka, Yehoshua, Lauriola, Mattia, Feldman, Morris E., Sas-Chen, Aldema, Ulitsky, Igor, Yarden, Yosef · 2016 · Nucleic Acids Research
54. New insights from uncultivated genomes of the global human gut microbiome
    Nayfach, Stephen, Shi, Zhou Jason, Seshadri, Rekha, Pollard, Katherine S., Kyrpides, Nikos C. · 2019 · Nature
55. Transgenerational epigenetic programming via sperm microRNA recapitulates effects of paternal stress
    Rodgers, Ali B., Morgan, Christopher P., Leu, N. Adrian, Bale, Tracy L. · 2015 · Proceedings of the National Academy of Sciences
56. Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus
    Readhead, Ben, Haure-Mirande, Jean-Vianney, Funk, Cory C., Richards, Matthew A., Shannon, Paul, Haroutunian, Vahram, Sano, Mary, Liang, Winnie S., Beckmann, Noam D., Price, Nathan D. et al. · 2018 · Neuron
57. The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific
    Shkoporov, Andrey N., Clooney, Adam G., Sutton, Thomas D.S., Ryan, Feargal J., Daly, Karen M., Nolan, James A., McDonnell, Siobhan A., Khokhlova, Ekaterina V., Draper, Lorraine A., Forde, Amanda et al. · 2019 · Cell Host & Microbe
58. Potential roles of gut microbiome and metabolites in modulating ALS in mice
    Blacher, Eran, Bashiardes, Stavros, Shapiro, Hagit, Rothschild, Daphna, Mor, Uria, Dori-Bachash, Mally, Kleimeyer, Christian, Moresi, Claudia, Harnik, Yotam, Zur, Maya et al. · 2019 · Nature
59. Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10
    Maeder, Morgan L., Stefanidakis, Michael, Wilson, Christopher J., Baral, Reshica, Barrera, Luis Alberto, Bounoutas, George S., Bumcrot, David, Chao, Hoson, Ciulla, Dawn M., DaSilva, Jennifer A. et al. · 2019 · Nature Medicine
60. Microbiota-Derived Short-Chain Fatty Acids Promote the Memory Potential of Antigen-Activated CD8+ T Cells
    Bachem, Annabell, Makhlouf, Christina, Binger, Katrina J., de Souza, David P., Tull, Deidra, Hochheiser, Katharina, Whitney, Paul G., Fernandez-Ruiz, Daniel, Dähling, Sabrina, Kastenmüller, Wolfgang et al. · 2019 · Immunity
61. Quantitative assessment of single-cell RNA-sequencing methods
    Wu, Angela R, Neff, Norma F, Kalisky, Tomer, Dalerba, Piero, Treutlein, Barbara, Rothenberg, Michael E, Mburu, Francis M, Mantalas, Gary L, Sim, Sopheak, Clarke, Michael F et al. · 2014 · Nature Methods
62. Clonal haematopoiesis harbouring AML-associated mutations is ubiquitous in healthy adults
    Young, Andrew L., Challen, Grant A., Birmann, Brenda M., Druley, Todd E. · 2016 · Nature Communications
63. Inhibition of the Glycolytic Activator PFKFB3 in Endothelium Induces Tumor Vessel Normalization, Impairs Metastasis, and Improves Chemotherapy
    Cantelmo, Anna Rita, Conradi, Lena-Christin, Brajic, Aleksandra, Goveia, Jermaine, Kalucka, Joanna, Pircher, Andreas, Chaturvedi, Pallavi, Hol, Johanna, Thienpont, Bernard, Teuwen, Laure-Anne et al. · 2016 · Cancer Cell
64. Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes
    Tran, Nicholas M., Shekhar, Karthik, Whitney, Irene E., Jacobi, Anne, Benhar, Inbal, Hong, Guosong, Yan, Wenjun, Adiconis, Xian, Arnold, McKinzie E., Lee, Jung Min et al. · 2019 · Neuron
65. Formation of new chromatin domains determines pathogenicity of genomic duplications
    Franke, Martin, Ibrahim, Daniel M., Andrey, Guillaume, Schwarzer, Wibke, Heinrich, Verena, Schöpflin, Robert, Kraft, Katerina, Kempfer, Rieke, Jerković, Ivana, Chan, Wing-Lee et al. · 2016 · Nature
66. A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
    Gasperini, Molly, Hill, Andrew J., McFaline-Figueroa, José L., Martin, Beth, Kim, Seungsoo, Zhang, Melissa D., Jackson, Dana, Leith, Anh, Schreiber, Jacob, Noble, William S. et al. · 2019 · Cell
67. DeepCRISPR: Optimized CRISPR guide RNA design by deep learning
    Chuai, Guohui, Ma, Hanhui, Yan, Jifang, Chen, Ming, Hong, Nanfang, Xue, Dongyu, Zhou, Chi, Zhu, Chenyu, Chen, Ke, Duan, Bin et al. · 2018 · Genome biology
68. Mitochondrial double-stranded RNA triggers antiviral signalling in humans
    Dhir, Ashish, Dhir, Somdutta, Borowski, Lukasz S., Jimenez, Laura, Teitell, Michael, Rötig, Agnès, Crow, Yanick J., Rice, Gillian I., Duffy, Darragh, Tamby, Christelle et al. · 2018 · Nature
69. Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors
    Grünewald, Julian, Zhou, Ronghao, Garcia, Sara P., Iyer, Sowmya, Lareau, Caleb A., Aryee, Martin J., Joung, J. Keith · 2019 · Nature
70. Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota
    Li, Guolin, Xie, Cen, Lu, Siyu, Nichols, Robert G., Tian, Yuan, Li, Licen, Patel, Daxeshkumar, Ma, Yinyan, Brocker, Chad N., Yan, Tingting et al. · 2017 · Cell Metabolism
71. Proteogenomic and metabolomic characterization of human glioblastoma
    Wang, Liang-Bo, Karpova, Alla, Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Li, Yize, Rykunov, Dmitry, Colaprico, Antonio, Rothstein, Joseph H., Hong, Runyu et al. · 2021 · Cancer Cell
72. Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
    Haas, Brian J., Dobin, Alexander, Li, Bo, Stransky, Nicolas, Pochet, Nathalie, Regev, Aviv · 2019 · Genome biology
73. Loss of epigenetic information as a cause of mammalian aging
    Yang, Jae-Hyun, Hayano, Motoshi, Griffin, Patrick T., Amorim, João A., Bonkowski, Michael S., Apostolides, John K., Salfati, Elias L., Blanchette, Marco, Munding, Elizabeth M., Bhakta, Mital et al. · 2023 · Cell
74. Identification and characterization of circular RNAs As a new class of putative biomarkers in human blood
    Memczak, Sebastian, Papavasileiou, Panagiotis, Peters, Oliver, Rajewsky, Nikolaus · 2015 · PLoS ONE
75. Cooperative Binding of Transcription Factors Orchestrates Reprogramming
    Chronis, Constantinos, Fiziev, Petko, Papp, Bernadett, Butz, Stefan, Bonora, Giancarlo, Sabri, Shan, Ernst, Jason, Plath, Kathrin · 2017 · Cell
76. Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments
    Karkman, Antti, Pärnänen, Katariina, Larsson, D. G. Joakim · 2019 · Nature Communications
77. KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
    Imbeault, Michaël, Helleboid, Pierre-Yves, Trono, Didier · 2017 · Nature
78. Ultrastructural Details of Mammalian Chromosome Architecture
    Krietenstein, Nils, Abraham, Sameer, Venev, Sergey V., Abdennur, Nezar, Gibcus, Johan, Hsieh, Tsung-Han S., Parsi, Krishna Mohan, Yang, Liyan, Maehr, René, Mirny, Leonid A. et al. · 2020 · Molecular Cell
79. Subsistence strategies in traditional societies distinguish gut microbiomes
    Obregon-Tito, Alexandra J., Tito, Raul Y., Metcalf, Jessica, Sankaranarayanan, Krithivasan, Clemente, Jose C., Ursell, Luke K., Zech Xu, Zhenjiang, Van Treuren, Will, Knight, Rob, Gaffney, Patrick M. et al. · 2015 · Nature Communications
80. Starvation-Induced Transgenerational Inheritance of Small RNAs in C. elegans
    Rechavi, Oded, Houri-Ze’evi, Leah, Anava, Sarit, Goh, Wee Siong Sho, Kerk, Sze Yen, Hannon, Gregory J., Hobert, Oliver · 2014 · Cell
81. Disturbed mitochondrial dynamics in CD8+ TILs reinforce T cell exhaustion
    Yu, Yi-Ru, Imrichova, Hana, Wang, Haiping, Chao, Tung, Xiao, Zhengtao, Gao, Min, Rincon-Restrepo, Marcela, Franco, Fabien, Genolet, Raphael, Cheng, Wan-Chen et al. · 2020 · Nature Immunology
82. Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
    Chen, Jiji, Zhang, Zhengjian, Li, Li, Chen, Bi-Chang, Revyakin, Andrey, Hajj, Bassam, Legant, Wesley, Dahan, Maxime, Lionnet, Timothée, Betzig, Eric et al. · 2014 · Cell
83. Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
    Habib, Naomi, Li, Yinqing, Heidenreich, Matthias, Swiech, Lukasz, Avraham-Davidi, Inbal, Trombetta, John J., Hession, Cynthia, Zhang, Feng, Regev, Aviv · 2016 · Science
84. The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer
    Bell, Robert J. A., Rube, H. Tomas, Kreig, Alex, Mancini, Andrew, Fouse, Shaun D., Nagarajan, Raman P., Choi, Serah, Hong, Chibo, He, Daniel, Pekmezci, Melike et al. · 2015 · Science
85. Chromatin accessibility profiling by ATAC-seq
    Grandi, Fiorella C., Modi, Hailey, Kampman, Lucas, Corces, M. Ryan · 2022 · Nature Protocols
86. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis
    Fiddes, Ian T., Lodewijk, Gerrald A., Mooring, Meghan, Bosworth, Colleen M., Ewing, Adam D., Mantalas, Gary L., Novak, Adam M., van den Bout, Anouk, Bishara, Alex, Rosenkrantz, Jimi L. et al. · 2018 · Cell
87. Laboratory mice born to wild mice have natural microbiota and model human immune responses
    Rosshart, Stephan P., Herz, Jasmin, Vassallo, Brian G., Hunter, Ashli, Wall, Morgan K., Badger, Jonathan H., McCulloch, John A., Anastasakis, Dimitrios G., Sarshad, Aishe A., Leonardi, Irina et al. · 2019 · Science
88. Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with a high attack rate
    Addetia, Amin, Crawford, Katharine H. D., Dingens, Adam, Zhu, Haiying, Roychoudhury, Pavitra, Huang, Meei-Li, Jerome, Keith R., Bloom, Jesse D., Greninger, Alexander L. · 2020 · Journal of Clinical Microbiology
89. Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells
    Sloan, Steven A., Darmanis, Spyros, Huber, Nina, Khan, Themasap A., Birey, Fikri, Caneda, Christine, Reimer, Richard, Quake, Stephen R., Barres, Ben A., Paşca, Sergiu P. · 2017 · Neuron
90. Current challenges and best-practice protocols for microbiome analysis
    Bharti, Richa, Grimm, Dominik G · 2021 · Briefings in Bioinformatics
91. Widespread macromolecular interaction perturbations in human genetic disorders
    Sahni, Nidhi, Yi, Song, Taipale, Mikko, Fuxman Bass, Juan I., Coulombe-Huntington, Jasmin, Yang, Fan, Peng, Jian, Weile, Jochen, Karras, Georgios I., Wang, Yang et al. · 2015 · Cell
92. Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
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