Fast gapped-read alignment with Bowtie 2

Cited by (909)

Items 301–400 of 909

1. Bifidobacterium adolescentis as a key member of the human gut microbiota in the production of GABA
   Duranti, Sabrina, Ruiz, Lorena, Lugli, Gabriele Andrea, Tames, Héctor, Milani, Christian, Mancabelli, Leonardo, Mancino, Walter, Longhi, Giulia, Carnevali, Luca, Sgoifo, Andrea et al. · 2020 · Scientific Reports
2. Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling
   d’Hennezel, Eva, Abubucker, Sahar, Murphy, Leon O., Cullen, Thomas W. · 2017 · mSystems
3. <scp>GABA</scp> ‐producing <i>Bifidobacterium dentium</i> modulates visceral sensitivity in the intestine
   Pokusaeva, K., Johnson, C., Luk, B., Uribe, G., Fu, Y., Oezguen, N., Matsunami, R. K., Lugo, M., Major, A., Mori‐Akiyama, Y. et al. · 2017 · Neurogastroenterology &amp; Motility
4. Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks
   Rubin, Adam J., Parker, Kevin R., Satpathy, Ansuman T., Qi, Yanyan, Wu, Beijing, Ong, Alvin J., Mumbach, Maxwell R., Ji, Andrew L., Kim, Daniel S., Cho, Seung Woo et al. · 2019 · Cell
5. The mutational footprints of cancer therapies
   Pich, Oriol, Muiños, Ferran, Lolkema, Martijn Paul, Steeghs, Neeltje, Gonzalez-Perez, Abel, Lopez-Bigas, Nuria · 2019 · Nature Genetics
6. The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3
   Kuang, Zheng, Wang, Yuhao, Li, Yun, Ye, Cunqi, Ruhn, Kelly A., Behrendt, Cassie L., Olson, Eric N., Hooper, Lora V. · 2019 · Science
7. Multi-kingdom microbiota analyses identify bacterial–fungal interactions and biomarkers of colorectal cancer across cohorts
   Liu, Ning-Ning, Jiao, Na, Tan, Jing-Cong, Wang, Ziliang, Wu, Dingfeng, Wang, An-Jun, Chen, Jie, Tao, Liwen, Zhou, Chenfen, Fang, Wenjie et al. · 2022 · Nature Microbiology
8. The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells
   Omenetti, Sara, Bussi, Claudio, Metidji, Amina, Iseppon, Andrea, Lee, Sunjae, Tolaini, Mauro, Li, Ying, Kelly, Gavin, Chakravarty, Probir, Shoaie, Saeed et al. · 2019 · Immunity
9. The microbiome-derived metabolite TMAO drives immune activation and boosts responses to immune checkpoint blockade in pancreatic cancer
   Mirji, Gauri, Worth, Alison, Bhat, Sajad Ahmad, El Sayed, Mohamed, Kannan, Toshitha, Goldman, Aaron R., Tang, Hsin-Yao, Liu, Qin, Auslander, Noam, Dang, Chi V. et al. · 2022 · Science Immunology
10. H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions
    Cai, Yichao, Zhang, Ying, Loh, Yan Ping, Tng, Jia Qi, Lim, Mei Chee, Cao, Zhendong, Raju, Anandhkumar, Lieberman Aiden, Erez, Li, Shang, Manikandan, Lakshmanan et al. · 2021 · Nature Communications
11. A Somatically Acquired Enhancer of the Androgen Receptor Is a Noncoding Driver in Advanced Prostate Cancer
    Takeda, David Y., Spisák, Sándor, Seo, Ji-Heui, Bell, Connor, O’Connor, Edward, Korthauer, Keegan, Ribli, Dezső, Csabai, István, Solymosi, Norbert, Szállási, Zoltán et al. · 2018 · Cell
12. ImmGen report: sexual dimorphism in the immune system transcriptome
    Gal-Oz, Shani Talia, Maier, Barbara, Yoshida, Hideyuki, Seddu, Kumba, Elbaz, Nitzan, Czysz, Charles, Zuk, Or, Stranger, Barbara E., Ner-Gaon, Hadas, Shay, Tal · 2019 · Nature Communications
13. Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes
    Robertson, Catherine C., Inshaw, Jamie R. J., Onengut-Gumuscu, Suna, Chen, Wei-Min, Santa Cruz, David Flores, Yang, Hanzhi, Cutler, Antony J., Crouch, Daniel J. M., Farber, Emily, Bridges, S. Louis et al. · 2021 · Nature Genetics
14. Genetic Background Drives Transcriptional Variation in Human Induced Pluripotent Stem Cells
    Rouhani, Foad, Kumasaka, Natsuhiko, de Brito, Miguel Cardoso, Bradley, Allan, Vallier, Ludovic, Gaffney, Daniel · 2014 · PLoS Genetics
15. Chronic p53-independent p21 expression causes genomic instability by deregulating replication licensing
    Galanos, Panagiotis, Vougas, Konstantinos, Walter, David, Polyzos, Alexander, Maya-Mendoza, Apolinar, Haagensen, Emma J., Kokkalis, Antonis, Roumelioti, Fani-Marlen, Gagos, Sarantis, Tzetis, Maria et al. · 2016 · Nature Cell Biology
16. A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1
    Li, Wei, Hang, Saiyu, Fang, Yuan, Bae, Sena, Zhang, Yancong, Zhang, Minghao, Wang, Gang, McCurry, Megan D., Bae, Munhyung, Paik, Donggi et al. · 2021 · Cell Host &amp; Microbe
17. Proteogenomic Characterization of Human Early-Onset Gastric Cancer
    Mun, Dong-Gi, Bhin, Jinhyuk, Kim, Sangok, Kim, Hyunwoo, Jung, Jae Hun, Jung, Yeonjoo, Jang, Ye Eun, Park, Jong Moon, Kim, Hokeun, Jung, Yeonhwa et al. · 2019 · Cancer Cell
18. Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
    Wampach, Linda, Heintz-Buschart, Anna, Fritz, Joëlle V., Ramiro-Garcia, Javier, Habier, Janine, Herold, Malte, Narayanasamy, Shaman, Kaysen, Anne, Hogan, Angela H., Bindl, Lutz et al. · 2018 · Nature Communications
19. The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans
    Sánchez-Andrea, Irene, Guedes, Iame Alves, Hornung, Bastian, Boeren, Sjef, Lawson, Christopher E., Sousa, Diana Z., Bar-Even, Arren, Claassens, Nico J., Stams, Alfons J. M. · 2020 · Nature Communications
20. Somatic mosaicism and allele complexity induced by CRISPR/Cas9 RNA injections in mouse zygotes
    Yen, Shuo-Ting, Zhang, Min, Deng, Jian Min, Usman, Shireen J., Smith, Chad N., Parker-Thornburg, Jan, Swinton, Paul G., Martin, James F., Behringer, Richard R. · 2014 · Developmental Biology
21. High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome
    Zheng, Wenshan, Zhao, Shijie, Yin, Yehang, Zhang, Huidan, Needham, David M., Evans, Ethan D., Dai, Chengzhen L., Lu, Peter J., Alm, Eric J., Weitz, David A. · 2022 · Science
22. Joint profiling of histone modifications and transcriptome in single cells from mouse brain
    Zhu, Chenxu, Zhang, Yanxiao, Li, Yang Eric, Lucero, Jacinta, Behrens, M. Margarita, Ren, Bing · 2021 · Nature Methods
23. Natural regulatory mutations elevate the fetal globin gene via disruption of BCL11A or ZBTB7A binding
    Martyn, Gabriella E., Wienert, Beeke, Yang, Lu, Shah, Manan, Norton, Laura J., Burdach, Jon, Kurita, Ryo, Nakamura, Yukio, Pearson, Richard C. M., Funnell, Alister P. W. et al. · 2018 · Nature Genetics
24. Breast tumours maintain a reservoir of subclonal diversity during expansion
    Minussi, Darlan C., Nicholson, Michael D., Ye, Hanghui, Davis, Alexander, Wang, Kaile, Baker, Toby, Tarabichi, Maxime, Sei, Emi, Du, Haowei, Rabbani, Mashiat et al. · 2021 · Nature
25. Adaptive Immune Resistance Emerges from Tumor-Initiating Stem Cells
    Miao, Yuxuan, Yang, Hanseul, Levorse, John, Yuan, Shaopeng, Polak, Lisa, Sribour, Megan, Singh, Bhuvanesh, Rosenblum, Michael D., Fuchs, Elaine · 2019 · Cell
26. Epigenetic patterns in a complete human genome
    Gershman, Ariel, Sauria, Michael E. G., Guitart, Xavi, Vollger, Mitchell R., Hook, Paul W., Hoyt, Savannah J., Jain, Miten, Shumate, Alaina, Razaghi, Roham, Koren, Sergey et al. · 2022 · Science
27. Discovery of stimulation-responsive immune enhancers with CRISPR activation
    Simeonov, Dimitre R., Gowen, Benjamin G., Boontanrart, Mandy, Roth, Theodore L., Gagnon, John D., Mumbach, Maxwell R., Satpathy, Ansuman T., Lee, Youjin, Bray, Nicolas L., Chan, Alice Y. et al. · 2017 · Nature
28. Diagnostic potential and interactive dynamics of the colorectal cancer virome
    Hannigan, Geoffrey D., Duhaime, Melissa B., Ruffin, Mack T., Koumpouras, Charlie C., Schloss, Patrick D. · 2018 · mBio
29. The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine
    Saal, Lao H, Vallon-Christersson, Johan, Häkkinen, Jari, Hegardt, Cecilia, Grabau, Dorthe, Winter, Christof, Brueffer, Christian, Tang, Man-Hung Eric, Reuterswärd, Christel, Schulz, Ralph et al. · 2015 · Genome Medicine
30. Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis
    Williams, Michael R., Costa, Stephen K., Zaramela, Livia S., Khalil, Shadi, Todd, Daniel A., Winter, Heather L., Sanford, James A., O’Neill, Alan M., Liggins, Marc C., Nakatsuji, Teruaki et al. · 2019 · Science Translational Medicine
31. An atlas of β-glucuronidases in the human intestinal microbiome
    Pollet, Rebecca M., D'Agostino, Emma H., Walton, William G., Xu, Yongmei, Little, Michael S., Biernat, Kristen A., Pellock, Samuel J., Patterson, Loraine M., Creekmore, Benjamin C., Isenberg, Hanna N. et al. · 2017 · Structure
32. p21 produces a bioactive secretome that places stressed cells under immunosurveillance
    Sturmlechner, Ines, Zhang, Cheng, Sine, Chance C., van Deursen, Erik-Jan, Jeganathan, Karthik B., Hamada, Naomi, Grasic, Jan, Friedman, David, Stutchman, Jeremy T., Can, Ismail et al. · 2021 · Science
33. Neurons release serine to support mRNA translation in pancreatic cancer
    Banh, Robert S., Biancur, Douglas E., Yamamoto, Keisuke, Sohn, Albert S.W., Walters, Beth, Kuljanin, Miljan, Gikandi, Ajami, Wang, Huamin, Mancias, Joseph D., Schneider, Robert J. et al. · 2020 · Cell
34. Relating the gut metagenome and metatranscriptome to immunotherapy responses in melanoma patients
    Peters, Brandilyn A., Wilson, Melissa, Moran, Una, Pavlick, Anna, Izsak, Allison, Wechter, Todd, Weber, Jeffrey S., Osman, Iman, Ahn, Jiyoung · 2019 · Genome Medicine
35. Core circadian clock genes regulate leukemia stem cells in AML
    Puram, Rishi V., Kowalczyk, Monika S., de Boer, Carl G., Schneider, Rebekka K., Miller, Peter G., McConkey, Marie, Tothova, Zuzana, Tejero, Héctor, Heckl, Dirk, Järås, Marcus et al. · 2016 · Cell
36. Pathological priming causes developmental gene network heterochronicity in autistic subject-derived neurons
    Schafer, Simon T., Paquola, Apua C. M., Stern, Shani, Gosselin, David, Ku, Manching, Pena, Monique, Kuret, Thomas J. M., Liyanage, Marvin, Mansour, Abed AlFatah, Jaeger, Baptiste N. et al. · 2019 · Nature Neuroscience
37. Genomic insights into the evolutionary origin of Myxozoa within Cnidaria
    Chang, E. Sally, Neuhof, Moran, Rubinstein, Nimrod D., Diamant, Arik, Philippe, Hervé, Huchon, Dorothée, Cartwright, Paulyn · 2015 · Proceedings of the National Academy of Sciences
38. Precursors for Nonlymphoid-Tissue Treg Cells Reside in Secondary Lymphoid Organs and Are Programmed by the Transcription Factor BATF
    Delacher, Michael, Imbusch, Charles D., Hotz-Wagenblatt, Agnes, Mallm, Jan-Philipp, Bauer, Katharina, Simon, Malte, Riegel, Dania, Rendeiro, André F., Bittner, Sebastian, Sanderink, Lieke et al. · 2020 · Immunity
39. DNA Breaks and End Resection Measured Genome-wide by End Sequencing
    Canela, Andres, Sridharan, Sriram, Sciascia, Nicholas, Tubbs, Anthony, Meltzer, Paul, Sleckman, Barry P., Nussenzweig, André · 2016 · Molecular Cell
40. Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
    Milani, Christian, Lugli, Gabriele Andrea, Duranti, Sabrina, Turroni, Francesca, Mancabelli, Leonardo, Ferrario, Chiara, Mangifesta, Marta, Hevia, Arancha, Viappiani, Alice, Scholz, Matthias et al. · 2015 · Scientific Reports
41. Pharmacological targeting of the Wdr5-MLL interaction in C/EBPα N-terminal leukemia
    Grebien, Florian, Vedadi, Masoud, Getlik, Matthäus, Giambruno, Roberto, Grover, Amit, Avellino, Roberto, Skucha, Anna, Vittori, Sarah, Kuznetsova, Ekaterina, Smil, David et al. · 2015 · Nature Chemical Biology
42. High-throughput microbial culturomics using automation and machine learning
    Huang, Yiming, Sheth, Ravi U., Zhao, Shijie, Cohen, Lucas A., Dabaghi, Kendall, Moody, Thomas, Sun, Yiwei, Ricaurte, Deirdre, Richardson, Miles, Velez-Cortes, Florencia et al. · 2023 · Nature Biotechnology
43. Methods for ChIP-seq analysis: A practical workflow and advanced applications
    Nakato, Ryuichiro, Sakata, Toyonori · 2021 · Methods
44. Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues
    Delacher, Michael, Imbusch, Charles D, Weichenhan, Dieter, Breiling, Achim, Hotz-Wagenblatt, Agnes, Träger, Ulrike, Hofer, Ann-Cathrin, Kägebein, Danny, Wang, Qi, Frauhammer, Felix et al. · 2017 · Nature Immunology
45. Exome Sequencing and the Management of Neurometabolic Disorders
    Tarailo-Graovac, Maja, Shyr, Casper, Ross, Colin J., Horvath, Gabriella A., Salvarinova, Ramona, Ye, Xin C., Zhang, Lin-Hua, Bhavsar, Amit P., Lee, Jessica J.Y., Drögemöller, Britt I. et al. · 2016 · New England Journal of Medicine
46. Parallel analysis of transcription, integration, and sequence of single HIV-1 proviruses
    Einkauf, Kevin B., Osborn, Matthew R., Gao, Ce, Sun, Weiwei, Sun, Xiaoming, Lian, Xiaodong, Parsons, Elizabeth M., Gladkov, Gregory T., Seiger, Kyra W., Blackmer, Jane E. et al. · 2022 · Cell
47. Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses
    Xu, Heping, Ding, Jiarui, Porter, Caroline B.M., Wallrapp, Antonia, Tabaka, Marcin, Ma, Sai, Fu, Shujie, Guo, Xuanxuan, Riesenfeld, Samantha J., Su, Chienwen et al. · 2019 · Immunity
48. Epigenetic aging in major depressive disorder
    Han, Laura K.M., Aghajani, Moji, Clark, Shaunna L., Chan, Robin F., Hattab, Mohammad W., Shabalin, Andrey A., Zhao, Min, Kumar, Gaurav, Xie, Lin Ying, Jansen, Rick et al. · 2018 · American Journal of Psychiatry
49. Probiotics impact the antibiotic resistance gene reservoir along the human GI tract in a person-specific and antibiotic-dependent manner
    Montassier, Emmanuel, Valdés-Mas, Rafael, Batard, Eric, Zmora, Niv, Dori-Bachash, Mally, Suez, Jotham, Elinav, Eran · 2021 · Nature Microbiology
50. The Genome Landscape of Indigenous African Cattle
    Kim, Jaemin, Hanotte, Olivier, Mwai, Okeyo Ally, Dessie, Tadelle, Bashir, Salim, Diallo, Boubacar, Agaba, Morris, Kim, Kwondo, Kwak, Woori, Sung, Samsun et al. · 2017 · Genome biology
51. KDM5B promotes immune evasion by recruiting SETDB1 to silence retroelements
    Zhang, Shang-Min, Cai, Wesley L., Liu, Xiaoni, Thakral, Durga, Luo, Jiesi, Chan, Lok Hei, McGeary, Meaghan K., Song, Eric, Blenman, Kim R. M., Micevic, Goran et al. · 2021 · Nature
52. TGFβ inhibition restores a regenerative response in acute liver injury by suppressing paracrine senescence
    Bird, Thomas G., Müller, Miryam, Boulter, Luke, Vincent, David F., Ridgway, Rachel A., Lopez-Guadamillas, Elena, Lu, Wei-Yu, Jamieson, Thomas, Govaere, Olivier, Campbell, Andrew D. et al. · 2018 · Science Translational Medicine
53. Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells
    Sabbagh, Mark F, Heng, Jacob S, Luo, Chongyuan, Castanon, Rosa G, Nery, Joseph R, Rattner, Amir, Goff, Loyal A, Ecker, Joseph R, Nathans, Jeremy · 2018 · eLife
54. Gut microbiota dysbiosis and altered tryptophan catabolism contribute to autoimmunity in lupus-susceptible mice
    Choi, Seung-Chul, Brown, Josephine, Gong, Minghao, Ge, Yong, Zadeh, Mojgan, Li, Wei, Croker, Byron P., Michailidis, George, Garrett, Timothy J., Mohamadzadeh, Mansour et al. · 2020 · Science Translational Medicine
55. A Common Embryonic Origin of Stem Cells Drives Developmental and Adult Neurogenesis
    Berg, Daniel A., Su, Yijing, Jimenez-Cyrus, Dennisse, Patel, Aneek, Huang, Nancy, Morizet, David, Lee, Stephanie, Shah, Reeti, Ringeling, Francisca Rojas, Jain, Rajan et al. · 2019 · Cell
56. A mechanism for preventing asymmetric histone segregation onto replicating DNA strands
    Yu, Chuanhe, Gan, Haiyun, Serra-Cardona, Albert, Zhang, Lin, Gan, Songlin, Sharma, Sushma, Johansson, Erik, Chabes, Andrei, Xu, Rui-Ming, Zhang, Zhiguo · 2018 · Science
57. Homology-driven genome editing in hematopoietic stem and progenitor cells using ZFN mRNA and AAV6 donors
    Wang, Jianbin, Exline, Colin M, DeClercq, Joshua J, Llewellyn, G Nicholas, Hayward, Samuel B, Li, Patrick Wai-Lun, Shivak, David A, Surosky, Richard T, Gregory, Philip D, Holmes, Michael C et al. · 2015 · Nature Biotechnology
58. Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)
    Clark, Stephen J, Smallwood, Sébastien A, Lee, Heather J, Krueger, Felix, Reik, Wolf, Kelsey, Gavin · 2017 · Nature Protocols
59. Translation control of the immune checkpoint in cancer and its therapeutic targeting
    Xu, Yichen, Poggio, Mauro, Jin, Hyun Yong, Shi, Zhen, Forester, Craig M., Wang, Ying, Stumpf, Craig R., Xue, Lingru, Devericks, Emily, So, Lomon et al. · 2019 · Nature Medicine
60. Gut microorganisms act together to exacerbate inflammation in spinal cords
    Miyauchi, Eiji, Kim, Seok-Won, Suda, Wataru, Kawasumi, Masami, Onawa, Satoshi, Taguchi-Atarashi, Naoko, Morita, Hidetoshi, Taylor, Todd D., Hattori, Masahira, Ohno, Hiroshi · 2020 · Nature
61. Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity
    Schnell, Alexandra, Huang, Linglin, Singer, Meromit, Singaraju, Anvita, Barilla, Rocky M., Regan, Brianna M.L., Bollhagen, Alina, Thakore, Pratiksha I., Dionne, Danielle, Delorey, Toni M. et al. · 2021 · Cell
62. Synergy between Variant PRC1 Complexes Defines Polycomb-Mediated Gene Repression
    Fursova, Nadezda A., Blackledge, Neil P., Nakayama, Manabu, Ito, Shinsuke, Koseki, Yoko, Farcas, Anca M., King, Hamish W., Koseki, Haruhiko, Klose, Robert J. · 2019 · Molecular Cell
63. Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens
    Papalexi, Efthymia, Mimitou, Eleni P., Butler, Andrew W., Foster, Samantha, Bracken, Bernadette, Mauck, William M., Wessels, Hans-Hermann, Hao, Yuhan, Yeung, Bertrand Z., Smibert, Peter et al. · 2021 · Nature Genetics
64. CD8+ T-cells infiltrate Alzheimer’s disease brains and regulate neuronal- and synapse-related gene expression in APP-PS1 transgenic mice
    Unger, M.S., Li, E., Scharnagl, L., Poupardin, R., Altendorfer, B., Mrowetz, H., Hutter-Paier, B., Weiger, T.M., Heneka, M.T., Attems, J. et al. · 2020 · Brain, Behavior, and Immunity
65. Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq
    Swanson, Elliott, Lord, Cara, Reading, Julian, Heubeck, Alexander T, Genge, Palak C, Thomson, Zachary, Weiss, Morgan DA, Li, Xiao-jun, Savage, Adam K, Green, Richard R et al. · 2021 · eLife
66. Genomic deletion of malic enzyme 2 confers collateral lethality in pancreatic cancer
    Dey, Prasenjit, Baddour, Joelle, Muller, Florian, Wu, Chia Chin, Wang, Huamin, Liao, Wen-Ting, Lan, Zangdao, Chen, Alina, Gutschner, Tony, Kang, Yaan et al. · 2017 · Nature
67. Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia
    Gaiti, Federico, Chaligne, Ronan, Gu, Hongcang, Brand, Ryan M., Kothen-Hill, Steven, Schulman, Rafael C., Grigorev, Kirill, Risso, Davide, Kim, Kyu-Tae, Pastore, Alessandro et al. · 2019 · Nature
68. Genomic and Transcriptomic Determinants of Therapy Resistance and Immune Landscape Evolution during Anti-EGFR Treatment in Colorectal Cancer
    Woolston, Andrew, Khan, Khurum, Spain, Georgia, Barber, Louise J., Griffiths, Beatrice, Gonzalez-Exposito, Reyes, Hornsteiner, Lisa, Punta, Marco, Patil, Yatish, Newey, Alice et al. · 2019 · Cancer Cell
69. Epigenetic (re)programming of caste-specific behavior in the ant <i>Camponotus floridanus</i>
    Simola, Daniel F., Graham, Riley J., Brady, Cristina M., Enzmann, Brittany L., Desplan, Claude, Ray, Anandasankar, Zwiebel, Laurence J., Bonasio, Roberto, Reinberg, Danny, Liebig, Jürgen et al. · 2016 · Science
70. Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing
    Sharon, Eilon, Chen, Shi-An A., Khosla, Neil M., Smith, Justin D., Pritchard, Jonathan K., Fraser, Hunter B. · 2018 · Cell
71. Amplification of RNA by an RNA polymerase ribozyme
    Horning, David P., Joyce, Gerald F. · 2016 · Proceedings of the National Academy of Sciences
72. Host and pathogen response to bacteriophage engineered against Mycobacterium abscessus lung infection
    Nick, Jerry A., Dedrick, Rebekah M., Gray, Alice L., Vladar, Eszter K., Smith, Bailey E., Freeman, Krista G., Malcolm, Kenneth C., Epperson, L. Elaine, Hasan, Nabeeh A., Hendrix, Jo et al. · 2022 · Cell
73. Suppression of microRNA activity amplifies IFN-γ-induced macrophage activation and promotes anti-tumour immunity
    Baer, Caroline, Squadrito, Mario Leonardo, Laoui, Damya, Thompson, Danielle, Hansen, Sarah K., Kiialainen, Anna, Hoves, Sabine, Ries, Carola H., Ooi, Chia-Huey, De Palma, Michele · 2016 · Nature Cell Biology
74. Chemical Proteomics Identifies Druggable Vulnerabilities in a Genetically Defined Cancer
    Bar-Peled, Liron, Kemper, Esther K., Suciu, Radu M., Vinogradova, Ekaterina V., Backus, Keriann M., Horning, Benjamin D., Paul, Thomas A., Ichu, Taka-Aki, Svensson, Robert U., Olucha, Jose et al. · 2017 · Cell
75. Chd8 Mutation Leads to Autistic-like Behaviors and Impaired Striatal Circuits
    Platt, Randall J., Zhou, Yang, Slaymaker, Ian M., Shetty, Ashwin S., Weisbach, Niels R., Kim, Jin-Ah, Sharma, Jitendra, Desai, Mitul, Sood, Sabina, Kempton, Hannah R. et al. · 2017 · Cell Reports
76. Gene expression variability across cells and species shapes innate immunity
    Hagai, Tzachi, Chen, Xi, Miragaia, Ricardo J., Rostom, Raghd, Gomes, Tomás, Kunowska, Natalia, Henriksson, Johan, Park, Jong-Eun, Proserpio, Valentina, Donati, Giacomo et al. · 2018 · Nature
77. A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers
    El Khattabi, Laila, Zhao, Haiyan, Kalchschmidt, Jens, Young, Natalie, Jung, Seolkyoung, Van Blerkom, Peter, Kieffer-Kwon, Philippe, Kieffer-Kwon, Kyong-Rim, Park, Solji, Wang, Xiang et al. · 2019 · Cell
78. Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries
    Sun, James H., Zhou, Linda, Emerson, Daniel J., Phyo, Sai A., Titus, Katelyn R., Gong, Wanfeng, Gilgenast, Thomas G., Beagan, Jonathan A., Davidson, Beverly L., Tassone, Flora et al. · 2018 · Cell
79. A core microbiome signature as an indicator of health
    Wu, Guojun, Xu, Ting, Zhao, Naisi, Lam, Yan Y., Ding, Xiaoying, Wei, Dongqin, Fan, Jian, Shi, Yajuan, Li, Xiaofeng, Li, Mi et al. · 2024 · Cell
80. Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank
    Steinegger, Martin, Salzberg, Steven L. · 2020 · Genome Biology
81. Guidance for RNA-seq co-expression network construction and analysis: safety in numbers
    Ballouz, S., Verleyen, W., Gillis, J. · 2015 · Bioinformatics
82. Bromodomain Protein BRD4 Is a Transcriptional Repressor of Autophagy and Lysosomal Function
    Sakamaki, Jun-ichi, Wilkinson, Simon, Hahn, Marcel, Tasdemir, Nilgun, O’Prey, Jim, Clark, William, Hedley, Ann, Nixon, Colin, Long, Jaclyn S., New, Maria et al. · 2017 · Molecular Cell
83. Infection trains the host for microbiota-enhanced resistance to pathogens
    Stacy, Apollo, Andrade-Oliveira, Vinicius, McCulloch, John A., Hild, Benedikt, Oh, Ji Hoon, Perez-Chaparro, P. Juliana, Sim, Choon K., Lim, Ai Ing, Link, Verena M., Enamorado, Michel et al. · 2021 · Cell
84. Draft genome of a commonly misdiagnosed multidrug resistant pathogen Candida auris
    Chatterjee, Sharanya, Alampalli, Shuba Varshini, Nageshan, Rishi Kumar, Chettiar, Sivarajan T., Joshi, Sangeeta, Tatu, Utpal S. · 2015 · BMC Genomics
85. Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase
    Patterson, Andrew, Rimal, Bipin, Collins, Stephanie, Granda, Megan, Koo, Imhoi, Solanka, Sumeet, Hoque, Nushrat, Gentry, Emily, Yan, Tingting, Bisanz, Jordan et al. · 2022
86. PRC1 catalytic activity is central to polycomb system function
    Blackledge, Neil P., Fursova, Nadezda A., Kelley, Jessica R., Huseyin, Miles K., Feldmann, Angelika, Klose, Robert J. · 2020 · Molecular Cell
87. The origin and adaptive evolution of domesticated populations of yeast from Far East Asia
    Duan, Shou-Fu, Han, Pei-Jie, Wang, Qi-Ming, Liu, Wan-Qiu, Shi, Jun-Yan, Li, Kuan, Zhang, Xiao-Ling, Bai, Feng-Yan · 2018 · Nature Communications
88. TP63-mediated enhancer reprogramming drives the squamous subtype of pancreatic ductal adenocarcinoma
    Somerville, Tim D.D., Xu, Yali, Miyabayashi, Koji, Tiriac, Hervé, Cleary, Cristian R., Maia-Silva, Diogo, Milazzo, Joseph P., Tuveson, David A., Vakoc, Christopher R. · 2018 · Cell Reports
89. Integration of Alzheimer’s disease genetics and myeloid genomics identifies disease risk regulatory elements and genes
    Novikova, Gloriia, Kapoor, Manav, TCW, Julia, Abud, Edsel M., Efthymiou, Anastasia G., Chen, Steven X., Cheng, Haoxiang, Fullard, John F., Bendl, Jaroslav, Liu, Yiyuan et al. · 2021 · Nature Communications
90. Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
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