Fast gapped-read alignment with Bowtie 2

Cited by (909)

Items 501–600 of 909

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8. Efficacy of fecal microbiota transplantation in patients with Parkinson’s disease: clinical trial results from a randomized, placebo-controlled design
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12. Intermittent Fasting Promotes White Adipose Browning and Decreases Obesity by Shaping the Gut Microbiota
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13. A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes
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14. MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts
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16. Q493K and Q498H substitutions in Spike promote adaptation of SARS-CoV-2 in mice
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17. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
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18. ZnuA and zinc homeostasis in Pseudomonas aeruginosa
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19. Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality
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20. Adeno-to-squamous transition drives resistance to KRAS inhibition in LKB1 mutant lung cancer
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21. Profiling chromatin states using single-cell itChIP-seq
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22. YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation
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23. Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila
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24. Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication
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25. SCAF4 and SCAF8, mRNA Anti-Terminator Proteins
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26. Genome-wide mapping of autonomous promoter activity in human cells
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27. Therapeutic responses to <i>Roseomonas mucosa</i> in atopic dermatitis may involve lipid-mediated TNF-related epithelial repair
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28. Ribosomal DNA harbors an evolutionarily conserved clock of biological aging
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29. <i>Dnmt3a</i> restrains mast cell inflammatory responses
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30. High-Resolution Epigenomic Atlas of Human Embryonic Craniofacial Development
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31. An RNA polymerase ribozyme that synthesizes its own ancestor
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32. Insights into the biogenesis and potential functions of exonic circular RNA
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33. Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming.
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34. Functional assessment of human enhancer activities using whole-genome STARR-sequencing
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35. Probiotics synergized with conventional regimen in managing Parkinson’s disease
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36. Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1
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37. Highly efficient homology-driven genome editing in human T cells by combining zinc-finger nuclease mRNA and AAV6 donor delivery
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38. Sequence-Directed Action of RSC Remodeler and General Regulatory Factors Modulates +1 Nucleosome Position to Facilitate Transcription
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39. Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis
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40. Kupffer-cell-derived IL-6 is repurposed for hepatocyte dedifferentiation via activating progenitor genes from injury-specific enhancers
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41. A unique role for DNA (hydroxy)methylation in epigenetic regulation of human inhibitory neurons
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42. Cholera toxin promotes pathogen acquisition of host-derived nutrients
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43. A survey of k-mer methods and applications in bioinformatics
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44. Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration
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45. Single-cell nascent RNA sequencing unveils coordinated global transcription
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46. FOXA1 mutations reveal distinct chromatin profiles and influence therapeutic response in breast cancer
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47. Menopause Is Associated with an Altered Gut Microbiome and Estrobolome, with Implications for Adverse Cardiometabolic Risk in the Hispanic Community Health Study/Study of Latinos
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48. Features that define the best ChIP-seq peak calling algorithms
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49. Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma
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50. An integrative study of five biological clocks in somatic and mental health
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51. Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria
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52. Aryl Sulfonamides Degrade RBM39 and RBM23 by Recruitment to CRL4-DCAF15
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53. Widespread Backtracking by RNA Pol II Is a Major Effector of Gene Activation, 5′ Pause Release, Termination, and Transcription Elongation Rate
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54. The last common ancestor of animals lacked the HIF pathway and respired in low-oxygen environments
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55. Untitled work
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60. Protospacer adjacent motif (PAM)-distal sequences engage CRISPR Cas9 DNA target cleavage
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61. Ribosome Profiling Reveals a Cell-Type-Specific Translational Landscape in Brain Tumors
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63. Gut microbiota composition is associated with newborn functional brain connectivity and behavioral temperament
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64. Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
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65. Non-coding variability at the APOE locus contributes to the Alzheimer’s risk
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66. H3K4me1 Distribution Predicts Transcription State and Poising at Promoters
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79. Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis
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83. Metabolic independence drives gut microbial colonization and resilience in health and disease
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88. Prevalence of antibiotic resistance genes among human gut-derived bifidobacteria
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89. HDAC1 links early life stress to schizophrenia-like phenotypes
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90. Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms
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91. Gut Microbiota Interacts with Markers of Adipose Tissue Browning, Insulin Action and Plasma Acetate in Morbid Obesity
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