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Binning metagenomic contigs by coverage and composition

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Alneberg, Johannes, Bjarnason, Brynjar Smári, de Bruijn, Ino, Schirmer, Melanie, Quick, Joshua, Ijaz, Umer Z, Lahti, Leo, Loman, Nicholas J, Andersson, Anders F, Quince, Christopher·2014·Nature Methods

DOI 10.1038/nmeth.3103

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Hesketh-Best, P. J., Bosco-Santos, A., Garcia, S. L., O’Beirne, M. D., Werne, J. P., Gilhooly, W. P., & Silveira, C. B. (2023) · Communications Earth & Environment · doi:10.1038/s43247-023-00796-4 · Cited by 16
Uncultured prokaryotic genomes in the spotlight: An examination of publicly available data from metagenomics and single-cell genomics
Arikawa, K., & Hosokawa, M. (2023) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2023.09.010 · Cited by 13
A completeness-independent method for pre-selection of closely related genomes for species delineation in prokaryotes
Zhou, Y., Zheng, J., Wu, Y., Zhang, W., & Jin, J. (2020) · BMC Genomics · doi:10.1186/s12864-020-6597-x · Cited by 12
A multi-modal deep language model for contaminant removal from metagenome-assembled genomes
Zou, B., Wang, J., Ding, Y., Zhang, Z., Huang, Y., Fang, X., Cheung, K. C., See, S., & Zhang, L. (2024) · Nature Machine Intelligence · doi:10.1038/s42256-024-00908-5 · Cited by 9
Diverse quorum sensing systems regulate microbial communication and biogeochemical processes in deep-sea cold seeps
Peng, J., Liu, X., Wang, J., Meng, N., Cai, R., Peng, Y., Han, Y., Liao, J., Li, C., Rubin-Blum, M., et al. (2025) · Microbiome · doi:10.1186/s40168-025-02280-x · Cited by 6

Authors: Alneberg, J., Bjarnason, B. S., de Bruijn, I., Schirmer, M., Quick, J., Ijaz, U. Z., Lahti, L., Loman, N. J., Andersson, A. F., & Quince, C.
Venue: Nature Methods
Publisher: Springer Science and Business Media LLC
Published: 2014-09-14
Volume: 11
Issue: 11
Pages: 1144-1146
ISSN: 1548-7091 (ISSN-L)
1548-7105
DOI: 10.1038/nmeth.3103
OpenAlex: W2103901746
Cited by: 2,800
References: 3
FWCI: 25.92
Type: journal article
Language: en
Open access: green
Licence: www.springer.com/tdm (tdm)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

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Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.

Binning metagenomic contigs by coverage and composition

Overview

Integrity signals

Verification

Claims the paper makes

Self-check

Citations

Cites

Cited by

Metadata

Record

About these checks

Data sources