Data-driven biological subtypes of depression: Systematic review of biological approaches to depression subtyping
Open accessAbstract
Research into major depressive disorder (MDD) is complicated by population heterogeneity, which has motivated the search for more homogeneous subtypes through data-driven computational methods to identify patterns in data. In addition, data on biological differences could play an important role in identifying clinically useful subtypes. This systematic review aimed to summarize evidence for biological subtypes of MDD from data-driven studies. We undertook a systematic literature search of PubMed, PsycINFO, and Embase (December 2018). We included studies that identified (1) data-driven subtypes of MDD based on biological variables, or (2) data-driven subtypes based on clinical features (e.g., symptom patterns) and validated these with biological variables post-hoc. Twenty-nine publications including 24 separate analyses in 20 unique samples were identified, including a total of ~ 4000 subjects. Five out of six biochemical studies indicated that there might be depression subtypes with and without disturbed neurotransmitter levels, and one indicated there might be an inflammatory subtype. Seven symptom-based studies identified subtypes, which were mainly determined by severity and by weight gain vs. loss. Two studies compared subtypes based on medication response. These symptom-based subtypes were associated with differences in biomarker profiles and functional connectivity, but results have not sufficiently been replicated. Four out of five neuroimaging studies found evidence for groups with structural and connectivity differences, but results were inconsistent. The single genetic study found a subtype with a distinct pattern of SNPs, but this subtype has not been replicated in an independent test sample. One study combining all aforementioned types of data discovered a subtypes with different levels of functional connectivity, childhood abuse, and treatment response, but the sample size was small. Although the reviewed work provides many leads for future research, the methodological differences across studies and lack of replication preclude definitive conclusions about the existence of clinically useful and generalizable biological subtypes.
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Dissecting diagnostic heterogeneity in depression by integrating neuroimaging and genetics
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Evidence-based umbrella review of 162 peripheral biomarkers for major mental disorders
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The genetic basis of major depressive disorder
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Genetic heterogeneity and subtypes of major depression
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Functional MRI in major depressive disorder: A review of findings, limitations, and future prospects
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The definition and measurement of heterogeneity
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Neuroinflammation in HIV-associated depression: evidence and future perspectives
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Identification of transdiagnostic psychiatric disorder subtypes using unsupervised learning
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Embracing variability in the search for biological mechanisms of psychiatric illness
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Histamine and histamine receptors: Roles in major depressive disorder
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Depression and Anxiety in the Epilepsies: from Bench to Bedside
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The lure of misleading causal statements in functional connectivity researchPreprint
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Resolving heterogeneity in depression using individualized structural covariance network analysis
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Transcriptomic Similarity Informs Neuromorphic Deviations in Depression Biotypes
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Depression and prostate cancer: implications for urologists and oncologists
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Systematic review of data‐driven cognitive subtypes in Parkinson disease
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A Review and a Framework of Variables for Defining and Characterizing Tinnitus Subphenotypes
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Structural and functional neuroimaging of late-life depression: a coordinate-based meta-analysis
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A neuroimaging-based precision medicine framework for depression
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Subphenotyping depression using machine learning and electronic health records
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Latent Profiles of Childhood Adversity, Adolescent Mental Health, and Neural Network Connectivity
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Can Molecular Biology Propose Reliable Biomarkers for Diagnosing Major Depression?
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Gray matter atrophy is constrained by normal structural brain network architecture in depression
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Adenylate cyclase 3: a potential genetic link between obesity and major depressive disorder
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We need an operational framework for heterogeneity in psychiatric research
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Exploratory factor analysis of shared and specific genetic associations in depression and anxiety
Li, C., Cheng, S., Chen, Y., Jia, Y., Wen, Y. F., Zhang, H., Pan, C., Zhang, J., Zhang, Z., Yang, X., et al. (2023) · Progress in Neuro-Psychopharmacology and Biological Psychiatry · doi:10.1016/j.pnpbp.2023.110781 · Cited by 11 · see citing works
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The Role of Genetic Data in Dissecting Depression Heterogeneity
Mitchell, B. L., Monistrol-Mula, A., Thomas, J. T., & Byrne, E. M. (2025) · Biological Psychiatry · doi:10.1016/j.biopsych.2025.10.029 · Cited by 10 · see citing works
- Authors
- Beijers, L., Wardenaar, K. J., van Loo, H. M., & Schoevers, R. A.
- Affiliations
- University Medical Center Groningen (NL)
- Corresponding author
- Beijers, Lian
- Venue
- Molecular Psychiatry
- Published
- 2019-03-01
- Volume
- 24
- Issue
- 6
- Pages
- 888-900
- ISSN
- 1359-4184 (ISSN-L)
- 1476-5578
- OpenAlex
- W2919937325
- Cited by
- 240
- References
- 99
- Citations by year
- 2026: 29 · 2025: 48 · 2024: 34 · 2023: 36 · 2022: 32 · 2021: 22 · 2020: 31 · 2019: 7 · 2018: 1
- FWCI
- 2.95
- Type
- journal article
- Language
- en
- Open access
- green
- hdl.handle.net
- Licence
- other-oa
- www.springer.com/tdm (tdm)
- Locations
- Molecular Psychiatry (publishedVersion)
- PubMed (publishedVersion)
- University of Groningen research database (University of Groningen / Centre for Information Technology) (submittedVersion, other-oa)
- Topics
- Health Sciences › Medicine › Pharmacology › Treatment of Major Depression
- Social Sciences › Psychology › Experimental and Cognitive Psychology › Anxiety, Depression, Psychometrics, Treatment, Cognitive Processes
- Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
- Keywords
- major depressive disorder, depression subtypes, biological heterogeneity, neurotransmitter levels, inflammatory depression, biomarker profiles, functional connectivity, neuroimaging, genetic subtypes, childhood abuse, treatment response, weight gain and loss
- MeSH terms
- Adult, Depression, Major Depressive Disorder, Female, Humans, Male, Middle Aged, Psychometrics, Genetic Association Studies, Neuroimaging
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