The rumen microbiome: balancing food security and environmental impacts

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Metabolic Hydrogen Flows in Rumen Fermentation: Principles and Possibilities of Interventions

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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

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Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

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The role of microbes in rumen lipolysis and biohydrogenation and their manipulation

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Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows

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Donoghue, K. A., Bird-Gardiner, T. L., Arthur, P. F., Herd, R. M., & Hegarty, R. (2015) · EPubDev Repository · Cited by 10 · see citing works

Prevotella: A Key Player in Ruminal Metabolism

Betancur-Murillo, C. L., Aguilar-Marín, S. B., & Jovel, J. (2022) · Microorganisms · doi:10.3390/microorganisms11010001 · Cited by 283 · see citing works

Integrated meta-omics reveals new ruminal microbial features associated with feed efficiency in dairy cattle

Xue, M., Xie, Y., Zhong, Y., Ma, X., Sun, H., & Liu, J. (2022) · Microbiome · doi:10.1186/s40168-022-01228-9 · Cited by 192 · see citing works

Emergent coexistence in multispecies microbial communities

Chang, C., Bajić, D., Vila, J. C. C., Estrela, S., & Sánchez, Á. (2023) · Science · doi:10.1126/science.adg0727 · Cited by 170 · see citing works

Lignocellulose degradation by rumen bacterial communities: New insights from metagenome analyses

Gharechahi, J., Vahidi, M. F., Sharifi, G., Ariaeenejad, S., Ding, X., Han, J., & Salekdeh, G. H. (2023) · Environmental Research · doi:10.1016/j.envres.2023.115925 · Cited by 152 · see citing works

Gut microbiome colonization and development in neonatal ruminants: Strategies, prospects, and opportunities

Arshad, M. A., Hassan, F., Rehman, M. S.-U., Huws, S., Cheng, Y., & Din, A. U. (2021) · Animal nutrition · doi:10.1016/j.aninu.2021.03.004 · Cited by 144 · see citing works

Invited review: Advances in nutrition and feed additives to mitigate enteric methane emissions

Hristov, A. N. (2024) · Journal of Dairy Science · doi:10.3168/jds.2023-24440 · Cited by 95 · see citing works

The community-function landscape of microbial consortia

Sánchez, Á., Bajić, D., Díaz‐Colunga, J., Skwara, A., Vila, J. C. C., & Kuehn, S. (2023) · Cell Systems · doi:10.1016/j.cels.2022.12.011 · Cited by 92 · see citing works

Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates

Gharechahi, J., Sarikhan, S., Han, J., Ding, X., & Salekdeh, G. H. (2022) · npj Biofilms and Microbiomes · doi:10.1038/s41522-022-00309-9 · Cited by 85 · see citing works

Metagenomic analysis of community, enzymes and metabolic pathways during corn straw fermentation with rumen microorganisms for volatile fatty acid production

Liang, J., Fang, W., Wang, Q., Zubair, M., Zhang, G., Ma, W., Cai, Y., & Zhang, P. (2021) · Bioresource Technology · doi:10.1016/j.biortech.2021.126004 · Cited by 79 · see citing works

Single-cell transcriptomics across 2,534 microbial species reveals functional heterogeneity in the rumen microbiome

Jia, M., Zhu, S., Xue, M., Chen, H., Xu, J., Song, M., Tang, Y., Liu, X., Tao, Y., Zhang, T., et al. (2024) · Nature Microbiology · doi:10.1038/s41564-024-01723-9 · Cited by 77 · see citing works

Review: Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

Morgavi, D. P., Cantalapiedra-Hijar, G., Eugène, M., Martin, C., Nozière, P., Popova, M., Marty, I. O., Muñoz‐Tamayo, R., & Ungerfeld, E. M. (2023) · animal · doi:10.1016/j.animal.2023.100830 · Cited by 84 · see citing works

Rumen microbes, enzymes, metabolisms, and application in lignocellulosic waste conversion - A comprehensive review

Liang, J., Zhang, R., Chang, J., Chen, L., Nabi, M., Zhang, H., Zhang, G., & Zhang, P. (2024) · Biotechnology Advances · doi:10.1016/j.biotechadv.2024.108308 · Cited by 75 · see citing works

Long-term rumen microorganism fermentation of corn stover in vitro for volatile fatty acid production

Liang, J., Fang, W., Chang, J., Zhang, G., Ma, W., Nabi, M., Zubair, M., Zhang, R., Chen, L., Huang, J., et al. (2022) · Bioresource Technology · doi:10.1016/j.biortech.2022.127447 · Cited by 72 · see citing works

Hydrogen and formate production and utilisation in the rumen and the human colon

Kelly, W. J., Mackie, R. I., Attwood, G. T., Janssen, P. H., McAllister, T. A., & Leahy, S. C. (2022) · Animal Microbiome · doi:10.1186/s42523-022-00174-z · Cited by 68 · see citing works

Enteric methane mitigation interventions

Fouts, J. Q., Honan, M. C., Roque, B. M., Tricárico, J. M., & Kebreab, E. (2022) · Translational Animal Science · doi:10.1093/tas/txac041 · Cited by 68 · see citing works

Bovine milk microbiota: Key players, origins, and potential contributions to early-life gut development

Guo, W., Liu, S., Khan, M. Z., Wang, J., Chen, T., Alugongo, G. M., Li, S., & Cao, Z. (2023) · Journal of Advanced Research · doi:10.1016/j.jare.2023.06.016 · Cited by 64 · see citing works

Ruminal Microbiota Determines the High-Fiber Utilization of Ruminants: Evidence from the Ruminal Microbiota Transplant

Chen, X., Yan, F., Liu, T., Zhang, Y., Li, X., Wang, M., Zhang, C., Xu, X., Deng, L., Yao, J., et al. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.00446-22 · Cited by 63 · see citing works

In Pursuit of Understanding the Rumen Microbiome

Sanjorjo, R. A., Tseten, T., Kang, M., Kwon, M., & Kim, S.-W. (2023) · Fermentation · doi:10.3390/fermentation9020114 · Cited by 62 · see citing works

Gut microbiota facilitate adaptation of invasive moths to new host plants

Zhang, S., Song, F., Wang, J., Li, X., Zhang, Y., Zhou, W., & Xu, L. (2024) · The ISME Journal · doi:10.1093/ismejo/wrae031 · Cited by 59 · see citing works

In vitro fermentation of fructooligosaccharide and galactooligosaccharide and their effects on gut microbiota and SCFAs in infants

Yao, D., Wu, M., Dong, Y., Ma, L., Wang, X., Xu, L., Yu, Q., & Zheng, X. (2022) · Journal of Functional Foods · doi:10.1016/j.jff.2022.105329 · Cited by 58 · see citing works

Concepts and Consequences of a Core Gut Microbiota for Animal Growth and Development

Perlman, D., Martínez-Álvaro, M., Moraïs, S., Altshuler, I., Hagen, L. H., Jami, E., Roehe, R., Pope, P. B., & Mizrahi, I. (2021) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-013020-020412 · Cited by 56 · see citing works

Research progress and applications of genome‐wide association study in farm animals

Tan, X., He, Z., Fahey, A. G., Zhao, G., Liu, R., & Wen, J. (2023) · Animal Research and One Health · doi:10.1002/aro2.14 · Cited by 55 · see citing works

The multi-kingdom microbiome of the goat gastrointestinal tract

Cao, Y., Feng, T., Wu, Y., Xu, Y., Du, L., Wang, T., Luo, Y., Wang, Y., Li, Z., Xuan, Z., et al. (2023) · Microbiome · doi:10.1186/s40168-023-01651-6 · Cited by 53 · see citing works

Invited review: Rumen modifiers in today's dairy rations

Firkins, J. L., & Mitchell, K. E. (2023) · Journal of Dairy Science · doi:10.3168/jds.2022-22644 · Cited by 54 · see citing works

Electron flow: key to mitigating ruminant methanogenesis

Leahy, S. C., Janssen, P. H., Attwood, G. T., Mackie, R. I., McAllister, T. A., & Kelly, W. J. (2022) · Trends in Microbiology · doi:10.1016/j.tim.2021.12.005 · Cited by 50 · see citing works

Interspecies and seasonal variations in macroalgae from the Nordic region: Chemical composition and impacts on rumen fermentation and microbiome assembly

Pandey, D., Hansen, H. H., Dhakal, R., Aryal, N., Rai, S. P., Sapkota, R., Nielsen, M. O., Novoa-Garrido, M., & Khanal, P. (2022) · Journal of Cleaner Production · doi:10.1016/j.jclepro.2022.132456 · Cited by 51 · see citing works

Sodium butyrate promotes gastrointestinal development of preweaning bull calves via inhibiting inflammation, balancing nutrient metabolism, and optimizing microbial community functions

Zhong, H., Yu, W., Wang, M., Lin, B., Sun, X., Zheng, N., Wang, J., & Zhao, S. (2023) · Animal nutrition · doi:10.1016/j.aninu.2023.04.004 · Cited by 50 · see citing works

Response of rumen microorganisms to pH during anaerobic hydrolysis and acidogenesis of lignocellulose biomass

Liang, J., Zhang, P., Zhang, R., Zhang, R., Chen, L., Wang, G., Tian, Y., & Zhang, G. (2023) · Waste Management · doi:10.1016/j.wasman.2023.12.035 · Cited by 46 · see citing works

International Symposium on Ruminant Physiology: The role of rumen microbiome in the development of methane mitigation strategies for ruminant livestock

Waters, S. M., Roskam, E., Smith, P. E., Kenny, D. A., Popova, M., Eugène, M., & Morgavi, D. P. (2025) · Journal of Dairy Science · doi:10.3168/jds.2024-25778 · Cited by 45 · see citing works

— Invited Review — Hydrogen production and hydrogen utilization in the rumen: key to mitigating enteric methane production

Mackie, R. I., Kim, H. W., Kim, N. K., & Cann, I. (2023) · Animal Bioscience · doi:10.5713/ab.23.0294 · Cited by 44 · see citing works

Sustainable Livestock Production in Nepal: A Focus on Animal Nutrition Strategies

Khanal, P., Dhakal, R., Khanal, T., Pandey, D., Devkota, N. R., & Nielsen, M. O. (2022) · Agriculture · doi:10.3390/agriculture12050679 · Cited by 54 · see citing works

Causal relationship between gut microbiota and gastrointestinal diseases: a mendelian randomization study

Wu, K., Luo, Q., Liu, Y., Li, A., Xia, D., & Sun, X. (2024) · Journal of Translational Medicine · doi:10.1186/s12967-024-04894-5 · Cited by 43 · see citing works

Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits

Yan, M., & Yu, Z. (2024) · Microbiome · doi:10.1186/s40168-024-01791-3 · Cited by 43 · see citing works

Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions

Xie, F., Zhao, S., Zhan, X., Zhou, Y., Li, Y., Zhu, W., Pope, P. B., Attwood, G. T., Jin, W., & Mao, S. (2024) · Genome biology · doi:10.1186/s13059-024-03167-0 · Cited by 42 · see citing works

Enteric methane research and mitigation strategies for pastoral-based beef cattle production systems

Smith, P. E., Kelly, A. K., Kenny, D. A., & Waters, S. M. (2022) · Frontiers in Veterinary Science · doi:10.3389/fvets.2022.958340 · Cited by 41 · see citing works

Bacillus subtilis and Macleaya cordata extract regulate the rumen microbiota associated with enteric methane emission in dairy cows

Jia, P., Dong, L., Tu, Y., & Diao, Q. (2023) · Microbiome · doi:10.1186/s40168-023-01654-3 · Cited by 40 · see citing works

Potential roles of the rectum keystone microbiota in modulating the microbial community and growth performance in goat model

Wang, D., Tang, G., Zhao, L., Wang, M., Chen, L., Zhao, C., Liang, Z., Chen, J., Cao, Y., & Yao, J. (2023) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-023-00850-3 · Cited by 39 · see citing works

A compendium of ruminant gastrointestinal phage genomes revealed a higher proportion of lytic phages than in any other environments

Wu, Y., Gao, N., Sun, C., Feng, T., Liu, Q., & Chen, W. (2024) · Microbiome · doi:10.1186/s40168-024-01784-2 · Cited by 38 · see citing works

The vast landscape of carbohydrate fermentation in prokaryotes

Hackmann, T. J. (2024) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuae016 · Cited by 40 · see citing works

In vitro effects of different levels of quebracho and chestnut tannins on rumen methane production, fermentation parameters, and microbiota

Battelli, M., Colombini, S., Parma, P., Galassi, G., Crovetto, G. M., Spanghero, M., Pravettoni, D., Zanzani, S. A., Manfredi, M. T., & Rapetti, L. (2023) · Frontiers in Veterinary Science · doi:10.3389/fvets.2023.1178288 · Cited by 36 · see citing works

Different feeding strategies can affect growth performance and rumen functions in Gangba sheep as revealed by integrated transcriptome and microbiome analyses

Jize, Z., Zhuoga, D., XiaoQing, Z., Ta, N., Jiacuo, G., Luosang, C., & Bandan, P. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.908326 · Cited by 36 · see citing works

Dietary selection of distinct gastrointestinal microorganisms drives fiber utilization dynamics in goats

Zhang, X., Zhong, R., Wu, J., Tan, Z., & Jiao, J. (2025) · Microbiome · doi:10.1186/s40168-025-02112-y · Cited by 35 · see citing works

Invited review: Interplay of rumen microbiome and the cattle host in modulating feed efficiency and methane emissions

Badhan, A., Wang, Y., Terry, S. A., Gruninger, R. J., Guan, L. L., & McAllister, T. A. (2025) · Journal of Dairy Science · doi:10.3168/jds.2024-26063 · Cited by 45 · see citing works

The phenotype and genotype of fermentative prokaryotes

Hackmann, T. J., & Zhang, B. (2023) · Science Advances · doi:10.1126/sciadv.adg8687 · Cited by 35 · see citing works

— Invited Review — Understanding the functionality of the rumen microbiota: searching for better opportunities for rumen microbial manipulation

Qi, W., Xue, M., Jia, M., Zhang, S., Yan, Q., & Sun, H. (2023) · Animal Bioscience · doi:10.5713/ab.23.0308 · Cited by 33 · see citing works

Integrating genome‐ and transcriptome‐wide association studies to uncover the host–microbiome interactions in bovine rumen methanogenesis

Wang, W., Wei, Z., Li, Z., Ren, J., Song, Y. J., Xu, J., Liu, A., Li, X., Li, M., Fan, H., et al. (2024) · iMeta · doi:10.1002/imt2.234 · Cited by 33 · see citing works

A metagenomic catalogue of the ruminant gut archaeome

Mi, J., Jing, X., Ma, C., Shi, F., Cao, Z., Yang, X., Yang, Y., Kakade, A., Wang, W., & Long, R. (2024) · Nature Communications · doi:10.1038/s41467-024-54025-3 · Cited by 37 · see citing works

Large-scale metagenomic assembly provide new insights into the genetic evolution of gut microbiomes in plateau ungulates

Xu, B., Song, P., Jiang, F., Cai, Z., Gu, H., Gao, H., Li, B., Liang, C., Qin, W., Zhang, J., et al. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00597-3 · Cited by 33 · see citing works

Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes

Mach, N., Midoux, C., Leclercq, S., Pennarun, S., Moyec, L. L., Rué, O., Robert, C., Sallé, G., & Barrey, É. (2022) · Communications Biology · doi:10.1038/s42003-022-03977-7 · Cited by 36 · see citing works

Association between gut microbiota and glioblastoma: a Mendelian randomization study

Wang, S., Yin, F., Guo, Z., Li, R., Sun, W., Wang, Y., Geng, Y., Sun, C., & Sun, D. (2024) · Frontiers in Genetics · doi:10.3389/fgene.2023.1308263 · Cited by 32 · see citing works

Metagenomic analysis reveals the efficient digestion mechanism of corn stover in Angus bull rumen: Microbial community succession, CAZyme composition and functional gene expression

Liang, J., Chang, J., Zhang, R., Fang, W., Chen, L., Ma, W., Zhang, Y., Yang, W., Li, Y., Zhang, P., et al. (2023) · Chemosphere · doi:10.1016/j.chemosphere.2023.139242 · Cited by 32 · see citing works

Yeast (Saccharomyces cerevisiae) Culture Promotes the Performance of Fattening Sheep by Enhancing Nutrients Digestibility and Rumen Development

Wang, J., Zhao, G., Zhuang, Y., Chai, J., & Zhang, N. (2022) · Fermentation · doi:10.3390/fermentation8120719 · Cited by 31 · see citing works

Diet and monensin influence the temporal dynamics of the rumen microbiome in stocker and finishing cattle

Chai, J., Weiss, C. P., Beck, P. A., Zhao, W., Li, Y., & Zhao, J. (2024) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-023-00967-5 · Cited by 31 · see citing works

Hydrochar more effectively mitigated nitrous oxide emissions than pyrochar from a coastal soil of the Yellow River Delta, China

You, X., Wang, X., Sun, R., Liu, Q., Fang, S., Kong, Q., Zhang, X., Xie, C., Zheng, H., Li, H., et al. (2022) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2022.159628 · Cited by 31 · see citing works

Ecological niches and assembly dynamics of diverse microbial consortia in the gastrointestine of goat kids

Jiao, J., Wu, J., Zhou, C., He, Z., Tan, Z., & Wang, M. (2024) · The ISME Journal · doi:10.1093/ismejo/wrae002 · Cited by 30 · see citing works

Linkages between rumen microbiome, host, and environment in yaks, and their implications for understanding animal production and management

Wang, W., Dong, Y., Guo, W., Zhang, X., Degen, A. A., Bi, S., Ding, L., Chen, X., & Long, R. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1301258 · Cited by 30 · see citing works

The ruminant gut microbiome vs enteric methane emission: The essential microbes may help to mitigate the global methane crisis

Thacharodi, A., Hassan, S., Ahmed, Z. H. T., Singh, P., Maqbool, M., Meenatchi, R., Pugazhendhi, A., & Sharma, A. K. (2024) · Environmental Research · doi:10.1016/j.envres.2024.119661 · Cited by 30 · see citing works

Butyrate metabolism in rumen epithelium affected by host and diet regime through regulating microbiota in a goat model

Zhuang, Y., Abdelsattar, M. M., Fu, Y., Zhang, N., & Chai, J. (2024) · Animal nutrition · doi:10.1016/j.aninu.2024.04.027 · Cited by 30 · see citing works

Probing the functional significance of wild animal microbiomes using omics data

Worsley, S. F., Videvall, E., Harrison, X. A., Björk, J. R., Mazel, F., & Wanelik, K. M. (2024) · Functional Ecology · doi:10.1111/1365-2435.14650 · Cited by 30 · see citing works

Supplementing branched-chain volatile fatty acids in dual-flow cultures varying in dietary forage and corn oil concentrations. I: Digestibility, microbial protein, and prokaryotic community structure

Mitchell, K. E., Wenner, B. A., Lee, C. H., Park, T., Socha, M. T., Kleinschmit, D. H., & Firkins, J. L. (2023) · Journal of Dairy Science · doi:10.3168/jds.2022-23165 · Cited by 29 · see citing works

Feeding hempseed cake alters the bovine gut, respiratory and reproductive microbiota

Winders, T., Holman, D. B., Schmidt, K. N., Luecke, S. M., Smith, D. J., Neville, B. W., Dahlen, C. R., Swanson, K. C., & Amat, S. (2023) · Scientific Reports · doi:10.1038/s41598-023-35241-1 · Cited by 29 · see citing works

Recent advances in bioconversion of lignocellulosic biomass for volatile fatty acid production with rumen microorganisms

Zhang, G., Li, J., Liu, S., Hou, P., Tao, X., Gao, W., Sun, L. L., Lv, L., & Liang, J. (2025) · Biotechnology Advances · doi:10.1016/j.biotechadv.2025.108654 · Cited by 26 · see citing works

Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits

Sasson, G., Moraïs, S., Kokou, F., Plate, K., Trautwein‐Schult, A., Jami, E., Bayer, E. A., Becher, D., & Mizrahi, I. (2022) · The ISME Journal · doi:10.1038/s41396-022-01295-8 · Cited by 26 · see citing works

Comparative Analysis of Gut Microbiota between Wild and Captive Golden Snub-Nosed Monkeys

Wang, Y., Yang, X., Zhang, M., & Pan, H. (2023) · Animals · doi:10.3390/ani13101625 · Cited by 25 · see citing works

Core rumen microbes are functional generalists that sustain host metabolism and gut ecosystem function

Tovar-Herrera, O. E., Grinshpan, I., Sorek, G., Lybovits, I., Levin, L., Moraïs, S., & Mizrahi, I. (2025) · Nature Ecology & Evolution · doi:10.1038/s41559-025-02904-3 · Cited by 25 · see citing works

City-level livestock methane emissions in China from 2010 to 2020

Du, M., Kang, X., Liu, Q., Du, H., Zhang, J., Yin, Y., & Cui, Z. (2024) · Scientific Data · doi:10.1038/s41597-024-03072-y · Cited by 25 · see citing works

Microbial contribution to the carbon flux in the soil: A literature review

Azevedo, L. C. B., Bertini, S. C. B., Ferreira, A. S., Rodovalho, N. S., Ferreira, L. F. R., & Kumar, A. (2024) · Revista Brasileira de Ciência do Solo · doi:10.36783/18069657rbcs20230065 · Cited by 24 · see citing works

Altering Dietary Soluble Protein Levels With Decreasing Crude Protein May Be a Potential Strategy to Improve Nitrogen Efficiency in Hu Sheep Based on Rumen Microbiome and Metabolomics

Zhang, Z., Shahzad, K., Shen, S., Dai, R., Lu, Y., Lu, Z., Li, C., Chen, Y., Qi, R., Gao, P., et al. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2021.815358 · Cited by 24 · see citing works

Invited review: Novel methods and perspectives for modulating the rumen microbiome through selective breeding as a means to improve complex traits: Implications for methane emissions in cattle

González-Recio, Ó., Martínez-Álvaro, M., Tiezzi, F., Saborío‐Montero, A., Maltecca, C., & Roehe, R. (2023) · Livestock Science · doi:10.1016/j.livsci.2023.105171 · Cited by 24 · see citing works

Rumen microbe fermentation of corn stalk to produce volatile fatty acids in a semi-continuous reactor

Liang, J., Zubair, M., Chen, L., Chang, J., Fang, W., Nabi, M., Yang, W. J., Zhang, Y., Li, Y., Zhang, G., et al. (2023) · Fuel · doi:10.1016/j.fuel.2023.128905 · Cited by 24 · see citing works

The Bifidobacterium-dominated fecal microbiome in dairy calves shapes the characteristic growth phenotype of host

Zhuang, Y., Liu, S., Gao, D., Xu, Y., Jiang, W., Chen, T., Xiao, J., Wang, J., Hou, G., Li, S., et al. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00534-4 · Cited by 24 · see citing works

Early-life ruminal microbiome-derived indole-3-carboxaldehyde and prostaglandin D2 are effective promoters of rumen development

Sun, D., Bian, G., Zhang, K., Liu, N., Yin, Y., Hou, Y., Xie, F., Zhu, W., Mao, S., & Liu, J. (2024) · Genome biology · doi:10.1186/s13059-024-03205-x · Cited by 23 · see citing works

Maternal gastrointestinal microbiome shapes gut microbial function and resistome of newborns in a cow-to-calf model

Zhuang, Y., Liu, S., Gao, D., Xu, Y., Jiang, W., Hou, G., Li, S., Zhao, X., Chen, T., Li, S., et al. (2024) · Microbiome · doi:10.1186/s40168-024-01943-5 · Cited by 24 · see citing works

Rumen microbiome and fat deposition in sheep: insights from a bidirectional mendelian randomization study

Zhang, Y., Zhang, X., Li, C., Tian, H., Weng, X., Lin, C., Zhang, D., Zhao, Y., Li, X., Cheng, J., et al. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00606-5 · Cited by 23 · see citing works

Enhancing Metabolic Efficiency through Optimizing Metabolizable Protein Profile in a Time Progressive Manner with Weaned Goats as a Model: Involvement of Gut Microbiota

Wu, J., Zhang, X., Wang, M., Zhou, C., Jiao, J., & Tan, Z. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.02545-21 · Cited by 23 · see citing works

Ruminal fermentation and methane production in vitro, milk production, nutrient utilization, blood profile, and immune responses of lactating goats fed polyphenolic and saponin-rich plant extracts

Shilwant, S., Hundal, J. S., Singla, M., & Patra, A. K. (2022) · Environmental Science and Pollution Research · doi:10.1007/s11356-022-22931-y · Cited by 26 · see citing works

Ligularia virgaurea improved nutrient digestion, ruminal fermentation, and bacterial composition in Tibetan sheep grazing on the Qinghai–Tibetan plateau in winter

Cui, X., Wang, Z., Fan, Q., Chang, S., Yan, T., & Hou, F. (2023) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2023.115628 · Cited by 23 · see citing works

Effect of grape pomace supplement on growth performance, gastrointestinal microbiota, and methane production in Tan lambs

Cheng, X., Du, X., Liang, Y., Degen, A. A., Wu, X., Ji, K., Gao, Q., Xin, G., Cong, H., & Yang, G. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1264840 · Cited by 23 · see citing works

Reductive acetogenesis is a dominant process in the ruminant hindgut

Li, Q., Huo, J., Ni, G., Zhang, F., Zhang, S., Zhang, X., Wang, R., Jiao, J., Yu, Z., Pu, X., et al. (2025) · Microbiome · doi:10.1186/s40168-024-02018-1 · Cited by 22 · see citing works

Methanogenesis inhibition remodels microbial fermentation and stimulates acetogenesis in ruminants

Ni, G., Wang, M., Walker, N. D., Muetzel, S., Schmidt, O., Fischer, A., Stemmler, R. T., Leung, P. M., Zhang, X., Li, Q., et al. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2514823122 · Cited by 24 · see citing works

Maternal rumen and milk microbiota shape the establishment of early-life rumen microbiota in grazing yak calves

Guo, W., Bi, S., Wang, W. W., Zhou, M., Neves, A. L. A., Degen, A. A., Guan, L. L., & Long, R. (2023) · Journal of Dairy Science · doi:10.3168/jds.2022-22655 · Cited by 22 · see citing works

Multilayer networks of plasmid genetic similarity reveal potential pathways of gene transmission

Shapiro, J. T., Zorea, A., Kav, A. B., Ontiveros, V. J., Mizrahi, I., & Pilosof, S. (2023) · The ISME Journal · doi:10.1038/s41396-023-01373-5 · Cited by 22 · see citing works

Does diet or macronutrients intake drive the structure and function of gut microbiota?

Li, Y., Yan, Y., Fu, H., Jin, S., He, S., Wang, Z., Dong, G., Li, B., & Guo, S. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1126189 · Cited by 22 · see citing works

Rumen Fermentation Parameters Prediction Model for Dairy Cows Using a Stacking Ensemble Learning Method

Wang, Y., Zhou, J., Wang, X., Yu, Q., Sun, Y., Li, Y., Zhang, Y., Shen, W., & Wei, X. (2023) · Animals · doi:10.3390/ani13040678 · Cited by 21 · see citing works

Pretreatment with rumen fluid improves methane production in the anaerobic digestion of corn straw

Xu, F., Mu, L., Wang, Y., Peng, H., Tao, J., & Chen, G. (2024) · Fuel · doi:10.1016/j.fuel.2023.130831 · Cited by 21 · see citing works

Impact of rumen microbiome on cattle carcass traits

Sato, Y., Sato, R., Fukui, E., & Yoshizawa, F. (2024) · Scientific Reports · doi:10.1038/s41598-024-56603-3 · Cited by 21 · see citing works

Effect of Divergent Feeding Regimes During Early Life on the Rumen Microbiota in Calves

Cristobal-Carballo, O., McCoard, S. A., Cookson, A. L., Laven, R. A., Ganesh, S., Lewis, S. J., & Muetzel, S. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.711040 · Cited by 20 · see citing works

Comparison of in situ ruminal straw fiber degradation and bacterial community between buffalo and Holstein fed with high-roughage diet

Pu, X., Zhang, X., Li, Q. S., Wang, R., Zhang, M., Zhang, S. Z., Lin, B., Tan, B., Tan, Z. L., & Wang, M. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1079056 · Cited by 20 · see citing works

Dietary spirulina supplementation modifies rumen development, fermentation and bacteria composition in Hu sheep when consuming high-fat dietary

Wang, Z., Liang, Y., Lu, J., Wei, Z., Bao, Y., Yao, X., Fan, Y., Wang, F., Wang, D., & Zhang, Y. L. (2023) · Frontiers in Veterinary Science · doi:10.3389/fvets.2023.1001621 · Cited by 22 · see citing works

Rumen Biogeographical Regions and Microbiome Variation

Soltis, M. P., Moorey, S. E., Egert-McLean, A. M., Voy, B. H., Shepherd, E., & Myer, P. R. (2023) · Microorganisms · doi:10.3390/microorganisms11030747 · Cited by 20 · see citing works

Plasmid-encoded toxin defence mediates mutualistic microbial interactions

Moraïs, S., Mazor, M., Tovar-Herrera, O. E., Zehavi, T., Zorea, A., Ifrach, M., Bogumil, D. D., Brandis, A. S., Walter, J., Elia, N., et al. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01521-9 · Cited by 20 · see citing works

Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction

Bian, G., Yu, S., Cheng, C., Huang, H., & Liu, J. (2024) · mSystems · doi:10.1128/msystems.01034-23 · Cited by 19 · see citing works

Effects of dietary crude protein levels in the concentrate supplement after grazing on rumen microbiota and metabolites by using metagenomics and metabolomics in Jersey-yak

Dai, R., Ma, X., Dingkao, R., Huang, C., La, Y., Li, X., Ma, X., Wu, X., Chu, M., Guo, X., et al. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1124917 · Cited by 19 · see citing works

Early Solid Diet Supplementation Influences the Proteomics of Rumen Epithelium in Goat Kids

Zhuang, Y., Lv, X., Cui, K., Chai, J., & Zhang, N. (2023) · Biology · doi:10.3390/biology12050684 · Cited by 19 · see citing works

Synthetic Communities of Gut Microbes for Basic Research and Translational Approaches in Animal Health and Nutrition

Jennings, S. A. V., & Clavel, T. (2023) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-021022-025552 · Cited by 19 · see citing works

Coping with extremes: the rumen transcriptome and microbiome co-regulate plateau adaptability of Xizang goat

Pan, C., Li, H., Mustafa, S. B., Renqing, C., Zhang, Z., Li, J., Song, T., Wang, G., & Zhao, W. (2024) · BMC Genomics · doi:10.1186/s12864-024-10175-8 · Cited by 19 · see citing works

Multiomics of yaks reveals significant contribution of microbiome into host metabolism

Yang, S., Zheng, J., Mao, H., Vinitchaikul, P., Wu, D., & Chai, J. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00609-2 · Cited by 19 · see citing works

Effect of Zanthoxylum bungeanum essential oil on rumen enzyme activity, microbiome, and metabolites in lambs

Zhang, H., Lang, X., Li, X., Chen, G., & Wang, C. (2022) · PLoS ONE · doi:10.1371/journal.pone.0272310 · Cited by 18 · see citing works

Review: Diving into the cow hologenome to reduce methane emissions and increase sustainability

González-Recio, Ó., Scrobota, N., López‐Paredes, J., Saborío‐Montero, A., Fernández, A., de Maturana, E. L., Villanueva, B., Goiri, I., Atxaerandio, R., & García-Rodríguez, A. (2023) · animal · doi:10.1016/j.animal.2023.100780 · Cited by 18 · see citing works

Saccharomyces cerevisiae and Kluyveromyces marxianus yeast co-cultures modulate the ruminal microbiome and metabolite availability to enhance rumen barrier function and growth performance in weaned lambs

Xu, Z., Yang, L., Chen, H., Liu, S., Li, X., Li, S., Ying, C., Li, X., Du, R. F., & Liu, D. (2024) · Animal nutrition · doi:10.1016/j.aninu.2024.06.005 · Cited by 18 · see citing works

Rumen microbial system, methanogenesis, and methane mitigation strategies in ruminants

Mir, N. A., & Begum, J. (2022) · Letters In Animal Biology · doi:10.62310/liab.v2i1.73 · Cited by 1 · see citing works

Methane mitigation in ruminants: a microbes perspective

(3133518), S. L. (2020) · Figshare

Host–Rumen Microbiome Interactions in Ruminants: Linking Microbial Fermentation, Productivity, Methane Mitigation, and Sustainable Performance

Kholif, A. E., & Kholif, A. M. (2026) · Fermentation · doi:10.3390/fermentation12090434

Connecting the ruminant microbiome to climate change: insights from current ecological and evolutionary concepts

Frazier, A., Beck, M. R., Waldrip, H. M., & Koziel, J. A. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1503315 · Cited by 11 · see citing works

Editorial: Assessing the environmental impact of ruminants: mitigation strategies and climate change implications

Cherdthong, A., Foiklang, S., & Altermann, E. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1883961