The DOI matches its Crossref record; 178 of the 178 references it cites were found in a registry or an index.
The rumen microbiome: balancing food security and environmental impacts
Abstract
Ruminants produce edible products and contribute to food security. They house a complex rumen microbial community that enables the host to digest their plant feed through microbial-mediated fermentation. However, the rumen microbiome is also responsible for the production of one of the most potent greenhouse gases, methane, and contributes about 18% of its total anthropogenic emissions. Conventional methods to lower methane production by ruminants have proved successful, but to a limited and often temporary extent. An increased understanding of the host-microbiome interactions has led to the development of new mitigation strategies. In this Review we describe the composition, ecology and metabolism of the rumen microbiome, and the impact on host physiology and the environment. We also discuss the most pertinent methane mitigation strategies that emerged to balance food security and environmental impacts.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“These microbes enable ruminants to derive most of their energy and nutrients from otherwise indigestible fibrous plant cell wall materials [2, 3].”
From Reductive acetogenesis is a dominant process in the ruminant hindgut (2025) · cites this paper as [3]
Citations
Cites
Energy conservation in chemotrophic anaerobic bacteria
Thauer, R. K., Jungermann, K., & Decker, K. (1977) · Bacteriological Reviews · doi:10.1128/br.41.1.100-180.1977 · Cited by 4,146
Global trends in antimicrobial use in food animals
Boeckel, T. V. V., Brower, C., Gilbert, M., Grenfell, B., Levin, S., Robinson, T., Teillant, A., & Laxminarayan, R. (2015) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.1503141112 · Cited by 3,637
Formation of propionate and butyrate by the human colonic microbiota
Louis, P., & Flint, H. J. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13589 · Cited by 3,028
Bacteriocins—A viable alternative to antibiotics?
Cotter, P. D., Ross, R. P., & Hill, C. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro2937 · Cited by 1,793
Worlds within worlds: evolution of the vertebrate gut microbiota
Ley, R. E., Lozupone, C., Hamady, M., Knight, R. D., & Gordon, J. I. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1978 · Cited by 1,697
Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Collaborators, G. R. C., Abecia, L., Angarita, E., Aravena, P., Nora Arenas, G., et al. (2015) · Scientific Reports · doi:10.1038/srep14567 · Cited by 1,682
Self-citationLe Quéré, C., Andrew, R. M., Friedlingstein, P., Sitch, S., Hauck, J., Pongratz, J., Pickers, P. A., Korsbakken, J. I., Peters, G. P., Canadell, J. G., et al. (2018) · Earth System Science Data · doi:10.5194/essd-10-2141-2018 · Cited by 1,645
Convergent adaptation of human lactase persistence in Africa and Europe
Tishkoff, S. A., Reed, F. A., Ranciaro, A., Voight, B. F., Babbitt, C. C., Silverman, J. S., Powell, K., Mortensen, H. M., Hirbo, J. B., Osman, M., et al. (2007) · Nature Genetics · doi:10.1038/ng1946 · Cited by 1,615
Electron transfer in syntrophic communities of anaerobic bacteria and archaea
Stams, A. J. M., & Plugge, C. M. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2166 · Cited by 1,441
Reichardt, N., Duncan, S. H., Young, P., Belenguer, Á., Leitch, E. C. M., Scott, K. P., Flint, H. J., & Louis, P. (2014) · The ISME Journal · doi:10.1038/ismej.2014.14 · Cited by 1,327
A Review of Antibiotic Use in Food Animals: Perspective, Policy, and Potential
Landers, T., Cohen, B., Wittum, T. E., & Larson, E. (2012) · Public Health Reports · doi:10.1177/003335491212700103 · Cited by 1,251
Demirel, B., & Scherer, P. (2008) · Reviews in Environmental Science and Bio/Technology · doi:10.1007/s11157-008-9131-1 · Cited by 1,200
Hristov, A. N., Oh, J., Firkins, J. L., Dijkstra, J., Kebreab, E., Waghorn, G. C., Makkar, H. P. S., Adesogan, A. T., Yang, W. Z., Lee, C., et al. (2013) · Journal of Animal Science · doi:10.2527/jas.2013-6583 · Cited by 1,086
Exploring the bovine rumen bacterial community from birth to adulthood
Jami, E., Israel, A., Kotser, A., & Mizrahi, I. (2013) · The ISME Journal · doi:10.1038/ismej.2013.2 · Cited by 963
Self-citationMethane mitigation in ruminants: from microbe to the farm scale
Martin, C., Morgavi, D., & Doreau, M. (2009) · animal · doi:10.1017/s1751731109990620 · Cited by 938
Janssen, P. H. (2010) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2010.07.002 · Cited by 915
Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants.
Shabat, S. K. B., Sasson, G., Doron-Faigenboim, A., Durman, T., Yaacoby, S., Berg Miller, M. E., White, B. A., Shterzer, N., & Mizrahi, I. (2016) · The ISME Journal · doi:10.1038/ismej.2016.62 · Cited by 823
Self-citationMicrobial ecosystem and methanogenesis in ruminants
Morgavi, D. P., Forano, E., Martin, C., & Newbold, C. J. (2010) · animal · doi:10.1017/s1751731110000546 · Cited by 694
Structure of the Archaeal Community of the Rumen
Janssen, P. H., & Kirs, M. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02812-07 · Cited by 655
The role of ciliate protozoa in the rumen
Newbold, C. J., de la Fuente, G., Belanche, A., Ramos-Morales, E., & McEwan, N. R. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01313 · Cited by 637
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
Hungate1000 project collaborators, Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., et al. (2018) · Nature Biotechnology · doi:10.1038/nbt.4110 · Cited by 624
Ionophores: Their Effect on Production Efficiency and Mode of Action
Bergen, W. G., & Bates, D. B. (1984) · Journal of Animal Science · doi:10.2527/jas1984.5861465x · Cited by 615
Stewart, R. D., Auffret, M. D., Warr, A., Walker, A. W., Roehe, R., & Watson, M. (2019) · Nature Biotechnology · doi:10.1038/s41587-019-0202-3 · Cited by 611
Composition and Similarity of Bovine Rumen Microbiota across Individual Animals
Jami, E., & Mizrahi, I. (2012) · PLoS ONE · doi:10.1371/journal.pone.0033306 · Cited by 609
Self-citationChantziaras, I., Boyen, F., Callens, B., & Dewulf, J. (2014) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkt443 · Cited by 592
Nkrumah, J. D., Okine, E. K., Mathison, G. W., Schmid, K., Li, C., Basarab, J. A., Price, M. A., Wang, Z., & Moore, S. S. (2006) · Journal of Animal Science · doi:10.2527/2006.841145x · Cited by 578
Methanogens: Methane Producers of the Rumen and Mitigation Strategies
Hook, S. E., Wright, A. G., & McBride, B. W. (2010) · Archaea · doi:10.1155/2010/945785 · Cited by 565
Li, F., Li, C., Chen, Y., Liu, J., Zhang, C., Irving, B., Fitzsimmons, C., Plastow, G., & Guan, L. L. (2019) · Microbiome · doi:10.1186/s40168-019-0699-1 · Cited by 530
Maron, D. F., Smith, T. J. S., & Nachman, K. E. (2013) · Globalization and Health · doi:10.1186/1744-8603-9-48 · Cited by 515
Rumen methanogens and mitigation of methane emission by anti-methanogenic compounds and substances
Patra, A. K., Park, T., Kim, M., & Yu, Z. (2017) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-017-0145-9 · Cited by 513
Hristov, A. N., Oh, J., Giallongo, F., Frederick, T. W., Harper, M. T., Weeks, H. L., Branco, A. F., Moate, P. J., Deighton, M. H., Williams, S. R. O., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1504124112 · Cited by 496
Huws, S. A., Creevey, C. J., Oyama, L. B., Mizrahi, I., Denman, S. E., Popova, M., Muñoz-Tamayo, R., Forano, E., Waters, S. M., Hess, M., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02161 · Cited by 487
Self-citationWeimer, P. J. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00296 · Cited by 487
Can enteric methane emissions from ruminants be lowered without lowering their production?
Grainger, C. I., & Beauchemin, K. A. (2011) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2011.04.021 · Cited by 478
Metabolic Hydrogen Flows in Rumen Fermentation: Principles and Possibilities of Interventions
Ungerfeld, E. M. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00589 · Cited by 472
Eshel, G., Shepon, A., Makov, T., & Milo, R. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1402183111 · Cited by 466
Petri, R. M., Schwaiger, T., Penner, G. B., Beauchemin, K. A., Forster, R. J., McKinnon, J. J., & McAllister, T. A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0083424 · Cited by 425
The rumen microbial metagenome associated with high methane production in cattle
Wallace, R. J., Rooke, J. A., McKain, N., Duthie, C.-A., Hyslop, J. J., Ross, D. W., Waterhouse, A., Watson, M., & Roehe, R. (2015) · BMC Genomics · doi:10.1186/s12864-015-2032-0 · Cited by 416
Self-citationMethane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
Shi, W., Moon, C. D., Leahy, S. C., Kang, D., Froula, J., Kittelmann, S., Fan, C., Deutsch, S., Gagic, D., Seedorf, H., et al. (2014) · Genome Research · doi:10.1101/gr.168245.113 · Cited by 414
A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions
Wallace, R. J., Sasson, G., Garnsworthy, P. C., Tapio, I., Gregson, E., Bani, P., Huhtanen, P., Bayat, A. R., Strozzi, F., Biscarini, F., et al. (2019) · Science Advances · doi:10.1126/sciadv.aav8391 · Cited by 410
Self-citationStatus of the phylogenetic diversity census of ruminal microbiomes
Kim, M., Morrison, M., & Yu, Z. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2010.01029.x · Cited by 407
Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows
Difford, G. F., Plichta, D. R., Løvendahl, P., Lassen, J., Noel, S. J., Højberg, O., Wright, A. G., Zhu, Z., Kristensen, L., Nielsen, H. B., et al. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007580 · Cited by 404
The role of microbes in rumen lipolysis and biohydrogenation and their manipulation
Lourenço, M., Ramos-Morales, E., & Wallace, R. J. (2010) · animal · doi:10.1017/s175173111000042x · Cited by 401
Self-citationThe ruminal microbiome associated with methane emissions from ruminant livestock
Tapio, I., Snelling, T. J., Strozzi, F., & Wallace, R. J. (2017) · Journal of Animal Science and Biotechnology · doi:10.1186/s40104-017-0141-0 · Cited by 391
Self-citationZhou, M., Hernandez‐Sanabria, E., & Guan, L. L. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.02815-08 · Cited by 343
Trophic Interactions and the Drivers of Microbial Community Assembly
Gralka, M., Szabo, R. E., Stocker, R., & Cordero, O. X. (2020) · Current Biology · doi:10.1016/j.cub.2020.08.007 · Cited by 343
Kamke, J., Kittelmann, S., Soni, P., Li, Y., Tavendale, M., Ganesh, S., Janssen, P. H., Shi, W., Froula, J., Rubin, E. M., et al. (2016) · Microbiome · doi:10.1186/s40168-016-0201-2 · Cited by 339
Li, F., Hitch, T. C. A., Chen, Y., Creevey, C. J., & Guan, L. L. (2019) · Microbiome · doi:10.1186/s40168-019-0618-5 · Cited by 337
Manipulating rumen microbiome and fermentation through interventions during early life: a review
Yáñez-Ruiz, D. R., Abecia, L., & Newbold, C. J. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01133 · Cited by 336
(EFSA), E. F. S. A., & European Medicines Agency (EMA) (2017) · EFSA Journal · doi:10.2903/j.efsa.2017.4872 · Cited by 332
Diverse hydrogen production and consumption pathways influence methane production in ruminants
Greening, C., Geier, R. R., Wang, C., Woods, L. C., Morales, S. E., McDonald, M. J., Rushton-Green, R., Morgan, X. C., Koike, S., Leahy, S. C., et al. (2019) · The ISME Journal · doi:10.1038/s41396-019-0464-2 · Cited by 328
van Zijderveld, S. M., Gerrits, W. J. J., Apajalahti, J., Newbold, J. R., Dijkstra, J., Leng, R. A., & Perdok, H. B. (2010) · Journal of Dairy Science · doi:10.3168/jds.2010-3281 · Cited by 326
Patra, A. K. (2013) · Livestock Science · doi:10.1016/j.livsci.2013.05.023 · Cited by 320
Leahy, S. C., Kelly, W. J., Altermann, E., Ronimus, R. S., Yeoman, C. J., Pacheco, D. M., Li, D., Kong, Z., McTavish, S. M., Sang, C., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0008926 · Cited by 318
Enzymology of one-carbon metabolism in methanogenic pathways
Ferry, J. G. (1999) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.1999.tb00390.x · Cited by 316
Emissions from livestock and manure management.
Gavrilova, O., Leip, A., Dong, H., MacDonald, J. D., Bravo, C. A. G., Amon, B., Rosales, R. B., del Prado, A., de Lima, M. A., Oyhantçabal, W., et al. (2006) · Cited by 313
Bauchop, T., & Mountfort, D. O. (1981) · Applied and Environmental Microbiology · doi:10.1128/aem.42.6.1103-1110.1981 · Cited by 305
Rumen microbial (meta)genomics and its application to ruminant production
Morgavi, D., Kelly, W. J., Janssen, P. H., & Attwood, G. T. (2012) · animal · doi:10.1017/s1751731112000419 · Cited by 292
Effects of Marine and Freshwater Macroalgae on In Vitro Total Gas and Methane Production
Machado, L., Magnusson, M. E., Paul, N. A., de Nys, R., & Tomkins, N. W. (2014) · PLoS ONE · doi:10.1371/journal.pone.0085289 · Cited by 283
Maasakkers, J. D., Jacob, D. J., Sulprizio, M. P., Scarpelli, T. R., Nesser, H. O., Sheng, J., Zhang, Y., Hersher, M., Bloom, A. A., Bowman, K. W., et al. (2019) · Atmospheric chemistry and physics · doi:10.5194/acp-19-7859-2019 · Cited by 280
Two different bacterial community types are linked with the low-methane emission trait in sheep.
Kittelmann, S., Pinares-Patiño, C. S., Seedorf, H., Kirk, M. R., Ganesh, S., McEwan, J. C., & Janssen, P. H. (2014) · PLoS ONE · doi:10.1371/journal.pone.0103171 · Cited by 277
Ungerfeld, E. M. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00037 · Cited by 269
Asparagopsis taxiformis decreases enteric methane production from sheep
Li, X., Norman, H. C., Kinley, R. D., Laurence, M., Wilmot, M., Bender, H. S., de Nys, R., & Tomkins, N. W. (2016) · Animal Production Science · doi:10.1071/an15883 · Cited by 249
Suen, G., Weimer, P. J., Stevenson, D. M., Aylward, F. O., Boyum, J., Deneke, J., Drinkwater, C., Ivanova, N., Mikhailova, N., Chertkov, O., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0018814 · Cited by 243
Furman, O., Shenhav, L., Sasson, G., Kokou, F., Honig, H. H., Jacoby, S., Hertz, T., Cordero, O. X., Halperin, E., & Mizrahi, I. (2020) · Nature Communications · doi:10.1038/s41467-020-15652-8 · Cited by 241
Self-citationMachado, L., Magnusson, M. E., Paul, N. A., Kinley, R. D., de Nys, R., & Tomkins, N. W. (2016) · Journal of Applied Phycology · doi:10.1007/s10811-016-0830-7 · Cited by 237
Lin, L., Xie, F., Sun, D., Liu, J., Zhu, W., & Mao, S. (2019) · Microbiome · doi:10.1186/s40168-019-0701-y · Cited by 236
Low-methane yield sheep have smaller rumens and shorter rumen retention time
Goopy, J. P., Donaldson, A., Hegarty, R., Vercoe, P. E., Haynes, F., Barnett, M., & Oddy, V. H. (2014) · British Journal Of Nutrition · doi:10.1017/s0007114513002936 · Cited by 230
Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies
Pope, P. B., Smith, W. J. M., Denman, S. E., Tringe, S. G., Barry, K., Hugenholtz, P., McSweeney, C. S., McHardy, A. C., & Morrison, M. (2011) · Science · doi:10.1126/science.1205760 · Cited by 225
Auffret, M. D., Dewhurst, R. J., Duthie, C.-A., Rooke, J. A., Wallace, R. J., Freeman, T. C., Stewart, R., Watson, M., & Roehe, R. (2017) · Microbiome · doi:10.1186/s40168-017-0378-z · Cited by 225
Self-citationMalmuthuge, N., Liang, G., & Guan, L. L. (2019) · Genome biology · doi:10.1186/s13059-019-1786-0 · Cited by 224
Lan, W., & Yang, C. (2018) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2018.11.180 · Cited by 223
Sasson, G., Kruger Ben-Shabat, S., Seroussi, E., Doron-Faigenboim, A., Shterzer, N., Yaacoby, S., Berg Miller, M. E., White, B. A., Halperin, E., & Mizrahi, I. (2017) · mBio · doi:10.1128/mbio.00703-17 · Cited by 219
Self-citationReducing rumen methane emissions through elimination of rumen protozoa
Hegarty, R. S. (1999) · Australian Journal of Agricultural Research · doi:10.1071/ar99008 · Cited by 213
Ionophores: their use as ruminant growth promotants and impact on food safety.
Callaway, T. R., Edrington, T. S., Rychlik, J. L., Genovese, K. J., Poole, T. L., Jung, Y., Bischoff, K. M., Anderson, R. C., & Nisbet, D. J. (2003) · PubMed · Cited by 212
Antimicrobial usage and resistance in beef production
Cameron, A., & McAllister, T. A. (2016) · Journal of Animal Science and Biotechnology · doi:10.1186/s40104-016-0127-3 · Cited by 207
Treponema bryantii sp. nov., a rumen spirochete that interacts with cellulolytic bacteria
Stanton, T. B., & Canale‐Parola, E. (1980) · Archives of Microbiology · doi:10.1007/bf00428018 · Cited by 203
de Lima, F. S., Oikonomou, G., Lima, S. F., Bicalho, M. L. S., Ganda, E., Filho, J. C. D. O., Lorenzo, G., Trojačanec, P., & Bicalho, R. C. (2014) · Applied and Environmental Microbiology · doi:10.1128/aem.03138-14 · Cited by 199
Muurinen, J., Stedtfeld, R. D., Karkman, A., Pärnänen, K. M. M., Tiedje, J. M., & Virta, M. (2017) · Environmental Science & Technology · doi:10.1021/acs.est.7b00551 · Cited by 198
Scheifinger, C. C., & Wolin, M. J. (1973) · Applied Microbiology · doi:10.1128/am.26.5.789-795.1973 · Cited by 197
Determining the culturability of the rumen bacterial microbiome
Creevey, C. J., Kelly, W. J., Henderson, G., & Leahy, S. C. (2014) · Microbial Biotechnology · doi:10.1111/1751-7915.12141 · Cited by 190
Cương, N. V., Padungtod, P., Thwaites, G. E., & Carrique-Mas, J. J. (2018) · Antibiotics · doi:10.3390/antibiotics7030075 · Cited by 187
Thomas, M., Webb, M. J., Ghimire, S., Blair, A. D., Olson, K. C., Fenske, G. J., Fonder, A. T., Christopher‐Hennings, J., Brake, D. W., & Scaria, J. (2017) · Scientific Reports · doi:10.1038/s41598-017-12481-6 · Cited by 187
Lactate and Acrylate Metabolism by Megasphaera elsdenii under Batch and Steady-State Conditions
Prabhu, R., Altman, E., & Eiteman, M. A. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.02443-12 · Cited by 186
Lovett, D. K., Lovell, S., Stack, L., Callan, J. J., Finlay, M., Conolly, J., & O’Mara, F. P. (2003) · Livestock Production Science · doi:10.1016/j.livprodsci.2003.09.010 · Cited by 180
Latham, M. J., & Wolin, M. J. (1977) · Applied and Environmental Microbiology · doi:10.1128/aem.34.3.297-301.1977 · Cited by 178
Sharp, R., Ziemer, C. J., Stern, M. D., & Stahl, D. A. (1998) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1998.tb01563.x · Cited by 176
Rumen protozoa and methanogenesis: not a simple cause–effect relationship
Morgavi, D., Martin, C., Jouany, J. P., & Ranilla, M. J. (2011) · British Journal Of Nutrition · doi:10.1017/s0007114511002935 · Cited by 174
The Road Not Taken: The Rumen Microbiome, Functional Groups, and Community States
Moraïs, S., & Mizrahi, I. (2019) · Trends in Microbiology · doi:10.1016/j.tim.2018.12.011 · Cited by 172
Self-citationInfluence of rumen protozoa on methane emission in ruminants: a meta-analysis approach
Guyader, J., Eugène, M., Nozière, P., Morgavi, D., Doreau, M., & Martin, C. (2014) · animal · doi:10.1017/s1751731114001852 · Cited by 166
Roque, B. M., Brooke, C. G., Ladau, J., Polley, T., Marsh, L. J., Najafi, N., Pandey, P., Singh, L., Kinley, R., Salwen, J. K., et al. (2019) · Animal Microbiome · doi:10.1186/s42523-019-0004-4 · Cited by 166
Temporal dynamics of the metabolically active rumen bacteria colonizing fresh perennial ryegrass
Huws, S., Edwards, J. E., Creevey, C. J., Stevens, P. R., Lin, W., Girdwood, S. E., Pachebat, J. A., & Kingston‐Smith, A. H. (2015) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiv137 · Cited by 159
Islands in the stream: from individual to communal fiber degradation in the rumen ecosystem
Moraïs, S., & Mizrahi, I. (2019) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuz007 · Cited by 158
Self-citationNoyes, N. R., Yang, X., Linke, L., Magnuson, R. J., Cook, S. R., Zaheer, R., Yang, H., Woerner, D. R., Geornaras, I., McArt, J. A. A., et al. (2016) · Scientific Reports · doi:10.1038/srep24645 · Cited by 156
Lee, P. C., Lee, W. G., Kwon, S., Lee, S. Y., & Chang, H. N. (1999) · Enzyme and Microbial Technology · doi:10.1016/s0141-0229(98)00156-2 · Cited by 156
Mizrahi, I., & Jami, E. (2018) · animal · doi:10.1017/s1751731118001957 · Cited by 155
Self-citationNew aspects and strategies for methane mitigation from ruminants
Kumar, S., Choudhury, P. K., Carro, M. D., Griffith, G. W., Dagar, S. S., Puniya, M., Calabro, S., Ravella, S. R., Dhewa, T., Upadhyay, R. C., et al. (2014) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-013-5365-0 · Cited by 152
A Vaccine against Rumen Methanogens Can Alter the Composition of Archaeal Populations
Williams, Y. J., Popovski, S., Rea, S. M., Skillman, L. C., Toovey, A. F., Northwood, K. S., & Wright, A. G. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.02453-08 · Cited by 151
Rumen microbiota and dietary fat: a mutual shaping
Enjalbert, F., Combes, S., Zened, A., & Meynadier, A. (2017) · Journal of Applied Microbiology · doi:10.1111/jam.13501 · Cited by 151
Insights into the bovine rumen plasmidome
Kav, A. B., Sasson, G., Jami, E., Doron‐Faigenboim, A., Benhar, I., & Mizrahi, I. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1116410109 · Cited by 150
Self-citationMorvan, B., & Bonnemoy, F. (1996) · Current Microbiology · doi:10.1007/s002849900023 · Cited by 149
Taxis, T. M., Wolff, S., Gregg, S. J., Minton, N. O., Zhang, C., Dai, J., Schnabel, R. D., Taylor, J. F., Kerley, M. S., Pires, J. C., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv973 · Cited by 146
Biomass hydrolysis inhibition at high hydrogen partial pressure in solid-state anaerobic digestion
Cazier, E. A., Trably, É., Steyer, J. P., & Escudié, R. (2015) · Bioresource Technology · doi:10.1016/j.biortech.2015.04.055 · Cited by 144
Belanche, A., Newbold, C., Morgavi, D., Bach, A., Zweifel, B., & Yáñez-Ruiz, D. (2020) · Animals · doi:10.3390/ani10040620 · Cited by 143
Guzman, C. E., Bereza-Malcolm, L., Groef, B. D., & Franks, A. E. (2015) · PLoS ONE · doi:10.1371/journal.pone.0133048 · Cited by 139
The rumen microbial ecosystem—some recent developments
Flint, H. J. (1997) · Trends in Microbiology · doi:10.1016/s0966-842x(97)01159-1 · Cited by 136
Characterization of antibiotic resistance genes in the species of the rumen microbiota
Sabino, Y. N. V., Santana, M. F., Oyama, L. B., Godoy-Santos, F., Moreira, A. J. S., Huws, S., & Mantovani, H. C. (2019) · Nature Communications · doi:10.1038/s41467-019-13118-0 · Cited by 134
Yang, C., Rooke, J. A., Cabeza, I., & Wallace, R. J. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00132 · Cited by 132
Self-citationMeta-analysis on the effects of lipid supplementation on methane production in lactating dairy cows
Eugène, M., Massé, D. I., Chiquette, J., & Benchaar, C. (2008) · Canadian Journal of Animal Science · doi:10.4141/cjas07112 · Cited by 129
Liu, J., Zhang, M., Xue, C., Zhu, W., & Mao, S. (2016) · Journal of Dairy Science · doi:10.3168/jds.2016-11398 · Cited by 128
Toxicology of Sulfur in Ruminants: Review
Kandylis, K. (1984) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(84)81564-7 · Cited by 128
Abecia, L., Martín-García, A. I., Martínez, G., Newbold, C. J., & Yáñez-Ruíz, D. R. (2013) · Journal of Animal Science · doi:10.2527/jas.2012-6142 · Cited by 127
Insights on Alterations to the Rumen Ecosystem by Nitrate and Nitrocompounds
Latham, E. A., Anderson, R. C., Pinchak, W. E., & Nisbet, D. J. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00228 · Cited by 121
Volatile halogen compounds in the alga Asparagopsis taxiformis (Rhodophyta)
Burreson, B. J., Moore, R. E., & Roller, P. P. (1976) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf60206a040 · Cited by 120
Establishment and Development of Ruminal Hydrogenotrophs in Methanogen-Free Lambs
Fonty, G., Joblin, K. N., Chavarot, M., Roux, R., Naylor, G. E., & Michallon, F. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00181-07 · Cited by 115
le Van, T. D., Robinson, J. A., Ralph, J., Greening, R. C., Smolenski, W. J., Leedle, J. A. Z., & Schaefer, D. M. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.9.3429-3436.1998 · Cited by 112
Chambers, L. R., Yang, Y., Littier, H., Ray, P. P., Zhang, T., Pruden, A. J., Strickland, M. S., & Knowlton, K. F. (2015) · PLoS ONE · doi:10.1371/journal.pone.0133764 · Cited by 110
Effects of several inhibitors on pure cultures of ruminal methanogens*
Ungerfeld, E. M., Rust, S. R., Boone, D. R., & Liu, Y. (2004) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2004.02330.x · Cited by 107
The role of thermodynamics in the control of ruminal fermentation
Ungerfeld, E. M., & Kohn, R. A. (2006) · Wageningen Academic Publishers eBooks · doi:10.3920/9789086865666_003 · Cited by 106
Wu, S., Baldwin, R. L., Li, W., Li, C., Connor, E. E., & Li, R. W. (2012) · Metagenomics · doi:10.4303/mg/235571 · Cited by 103
H 2 Production by Selenomonas ruminantium in the Absence and Presence of Methanogenic Bacteria
Scheifinger, C. C., Linehan, B., & Wolin, M. J. (1975) · Applied Microbiology · doi:10.1128/am.29.4.480-483.1975 · Cited by 102
Monensin and Nisin Affect Rumen Fermentation and Microbiota Differently In Vitro
Shen, J., Liu, Z., Yu, Z., & Zhu, W. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01111 · Cited by 98
Gomez, J. A. L., Mukhopadhya, I., Duncan, S. H., Louis, P., Shaw, S., Collie-Duguid, E. S. R., Crost, E. H., Juge, N., & Flint, H. J. (2018) · Environmental Microbiology · doi:10.1111/1462-2920.14454 · Cited by 95
Knight, T. W., Ronimus, R. S., Dey, D., Tootill, C. M., Naylor, G. E., Evans, P. N., Molano, G., Smith, A. H., Tavendale, M. H., Pinares-Patiño, C. S., et al. (2011) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2011.04.059 · Cited by 92
Reducing enteric methane emissions from dairy cattle: Two ways to supplement 3-nitrooxypropanol
Wesemael, D. V., Vandaele, L., Ampe, B., Cattrysse, H., Duval, S. M., Kindermann, M., Fievez, V., Campeneere, S. D., & Peiren, N. (2018) · Journal of Dairy Science · doi:10.3168/jds.2018-14534 · Cited by 92
Herd, R. M., Arthur, P. F., Donoghue, K. A., Bird, S. H., Bird-Gardiner, T. L., & Hegarty, R. S. (2014) · Journal of Animal Science · doi:10.2527/jas.2014-8273 · Cited by 90
Shaani, Y., Zehavi, T., Eyal, S., Miron, J., & Mizrahi, I. (2018) · The ISME Journal · doi:10.1038/s41396-018-0203-0 · Cited by 89
Self-citationBreider, I. S., Wall, E. H., & Garnsworthy, P. C. (2019) · Journal of Dairy Science · doi:10.3168/jds.2018-15909 · Cited by 88
Foley, P. A., Kenny, D. A., Callan, J. J., Boland, T. M., & O’Mara, F. P. (2008) · Journal of Animal Science · doi:10.2527/jas.2008-1026 · Cited by 87
A theoretical comparison between two ruminal electron sinks
Ungerfeld, E. M. (2013) · Frontiers in Microbiology · doi:10.3389/fmicb.2013.00319 · Cited by 85
Hart, E. H., Creevey, C. J., Hitch, T. C. A., & Kingston‐Smith, A. H. (2018) · Scientific Reports · doi:10.1038/s41598-018-28827-7 · Cited by 84
Piao, H., Lachman, M., Malfatti, S., Sczyrba, A., Knierim, B., Auer, M., Tringe, S. G., Mackie, R. I., Yeoman, C. J., & Hess, M. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00307 · Cited by 83
Evaluation of the RDP Classifier Accuracy Using 16S rRNA Gene Variable Regions
Vilo, C., & Dong, Q. (2012) · Metagenomics · doi:10.4303/mg/235551 · Cited by 83
Antibiotic growth-promoters in food animals
Hughes, P. (2004) · Cited by 82
Ørskov, E. R., Ojwang, I. A., & Reid, G. W. (1988) · Animal Science · doi:10.1017/s000335610003703x · Cited by 81
A meta-analysis of fumarate effects on methane production in ruminal batch cultures
Ungerfeld, E. M., Kohn, R. A., Wallace, R. J., & Newbold, C. J. (2007) · Journal of Animal Science · doi:10.2527/jas.2006-674 · Cited by 80
Self-citationThe animal gut as a melting pot for horizontal gene transfer
Shterzer, N., & Mizrahi, I. (2015) · Canadian Journal of Microbiology · doi:10.1139/cjm-2015-0049 · Cited by 77
Self-citationIwamoto, M., Asanuma, N., & Hino, T. (2002) · Anaerobe · doi:10.1006/anae.2002.0428 · Cited by 76
Changes in methane emission and rumen fermentation parameters induced by refaunation in sheep
Morgavi, D., Jouany, J. P., & Martin, C. (2008) · Australian Journal of Experimental Agriculture · doi:10.1071/ea07236 · Cited by 76
Arntzen, M. Ø., Várnai, A., Mackie, R. I., Eijsink, V. G. H., & Pope, P. B. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13770 · Cited by 76
Belanche, A., de la Fuente, G., & Newbold, C. J. (2014) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiu026 · Cited by 75
Abecia, L., Ramos-Morales, E., Martínez-Fernandez, G., Arco, A., Martín-García, A. I., Newbold, C. J., & Yáñez-Ruiz, D. R. (2014) · Animal Production Science · doi:10.1071/an14337 · Cited by 75
Friedman, N., Shriker, E., Gold, B., Durman, T., Zarecki, R., Ruppin, E., & Mizrahi, I. (2016) · Environmental Microbiology · doi:10.1111/1462-2920.13551 · Cited by 74
Self-citationMcAllister, T. A., Meale, S. J., Valle, E., Guan, L., Zhou, M., Kelly, W. J., Henderson, G., Attwood, G. T., & Janssen, P. H. (2015) · Journal of Animal Science · doi:10.2527/jas.2014-8329 · Cited by 69
Ng, F., Kittelmann, S., Patchett, M. L., Attwood, G. T., Janssen, P. H., Rakonjac, J., & Gagić, D. (2015) · Environmental Microbiology · doi:10.1111/1462-2920.13155 · Cited by 68
Succinic Acid Turnover and Propionate Production in the Bovine Rumen
Blackburn, T. H., & Hungate, R. E. (1963) · Applied Microbiology · doi:10.1128/am.11.2.132-135.1963 · Cited by 66
Wallace, R. J., Snelling, T. J., McCartney, C. A., Tapio, I., & Strozzi, F. (2017) · Genetics Selection Evolution · doi:10.1186/s12711-017-0285-6 · Cited by 66
Self-citationInsights Into Culturomics of the Rumen Microbiome
Zehavi, T., Probst, M., & Mizrahi, I. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01999 · Cited by 66
Self-citationSulfate Reduction by a Desulfovibrio Species Isolated from Sheep Rumen
Huisingh, J. L., McNeill, J. J., & Matrone, G. (1974) · Applied Microbiology · doi:10.1128/am.28.3.489-497.1974 · Cited by 64
Genomes of rumen bacteria encode atypical pathways for fermenting hexoses to short‐chain fatty acids
Hackmann, T. J., Ngugi, D. K., Firkins, J. L., & Tao, J. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13929 · Cited by 62
O’Hara, E., Kenny, D. A., McGovern, E., Byrne, C. J., McCabe, M. S., Guan, L. L., & Waters, S. M. (2020) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiz203 · Cited by 62
Use of some novel alternative electron sinks to inhibit ruminal methanogenesis
Ungerfeld, E. M., Rust, S. R., & Burnett, R. (2003) · annales de biologie animale biochimie biophysique · doi:10.1051/rnd:2003016 · Cited by 60
Mizrahi, I. (2013) · The Prokaryotes · doi:10.1007/978-3-642-30194-0_1 · Cited by 56
Self-citationWagner, T., Wegner, C., Kahnt, J., Ermler, U., & Shima, S. (2017) · Journal of Bacteriology · doi:10.1128/jb.00197-17 · Cited by 55
Friedman, N., Jami, E., & Mizrahi, I. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13846 · Cited by 54
Self-citationExploring the Prokaryotic Community Associated With the Rumen Ciliate Protozoa Population
Levy, B., & Jami, E. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02526 · Cited by 52
Lloyd, D., Williams, A. G., Amann, R., Hayes, A. J., Durrant, L., & Ralphs, J. R. (1996) · European Journal of Protistology · doi:10.1016/s0932-4739(96)80011-3 · Cited by 51
Tripathi, V. S., & Cytryn, E. J. (2017) · Essays in Biochemistry · doi:10.1042/ebc20160054 · Cited by 51
Mi, L., Yang, B., Hu, X., Luo, Y., Liu, J., Yu, Z., & Wang, J. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00575 · Cited by 50
Emissions from livestock and manure management.
DONG, H., MANGINO, J., MCALLISTER, T. A., HATFIELD, J. L., JOHNSON, D. E., LASSEY, K. R., LIMA, M. A. D., & ROMANOVSKAYA, A. (2006) · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas) · Cited by 50
Rychlik, J. L., & May, T. (2000) · Current Microbiology · doi:10.1007/s002849910035 · Cited by 49
The rumen microbial metaproteome as revealed by SDS-PAGE
Snelling, T. J., & Wallace, R. J. (2017) · BMC Microbiology · doi:10.1186/s12866-016-0917-y · Cited by 49
Self-citationMatte, A., Forsberg, C. W., & Gibbins, A. M. V. (1992) · Canadian Journal of Microbiology · doi:10.1139/m92-063 · Cited by 49
Abecia, L., Martínez, G., Waddams, K. E., Martín-García, A. I., Pinloche, E., Creevey, C. J., Denman, S. E., Newbold, C. J., & Yáñez-Ruíz, D. R. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02227 · Cited by 48
Altermann, E., Schofield, L. R., Ronimus, R. S., Beattie, A. K., & Reilly, K. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02378 · Cited by 48
INHIBITION OF METHANOGENESIS BY C1- AND C2-POLYCHLORINATED ALIPHATIC HYDROCARBONS
Yu, Z., & Smith, G. B. (2000) · Environmental Toxicology and Chemistry · doi:10.1002/etc.5620190910 · Cited by 48
Hegarty, R. S., Bird, S. H., Vanselow, B. A., & Woodgate, R. T. (2008) · British Journal Of Nutrition · doi:10.1017/s0007114508981435 · Cited by 46
Gagen, E. J., Mosoni, P., Denman, S. E., Jassim, R. A. M. A., McSweeney, C. S., & Forano, É. (2012) · Microbial Ecology · doi:10.1007/s00248-012-0024-z · Cited by 43
Ushida, K., Newbold, C. J., & Jouany, J. P. (1997) · The Journal of General and Applied Microbiology · doi:10.2323/jgam.43.129 · Cited by 39
Liu, L., Xiurong, X., Cao, Y., Cai, C., Cui, H., & Yao, J. (2017) · AMB Express · doi:10.1186/s13568-017-0377-2 · Cited by 38
Both air-sea components are crucial for El Niño forecast from boreal spring
Fang, X., & Mu, M. (2018) · Scientific Reports · doi:10.1038/s41598-018-28964-z · Cited by 35
The complete genome sequence of the rumen methanogen Methanobacterium formicicum BRM9
Kelly, W. J., Leahy, S. C., Li, D., Perry, R., Lambie, S. C., Attwood, G. T., & Altermann, E. (2014) · Standards in Genomic Sciences · doi:10.1186/1944-3277-9-15 · Cited by 33
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D. D., Sørensen, S. J., Hansen, L. H., Benhar, I., Halperin, E., Ron Shamir, A., & Mizrahi, I. (2019) · Environmental Microbiology · doi:10.1111/1462-2920.14813 · Cited by 30
Self-citationTemporal changes of the bacterial community colonizing wheat straw in the cow rumen
Jin, W., Wang, Y., Li, Y., Cheng, Y., & Zhu, W. (2018) · Anaerobe · doi:10.1016/j.anaerobe.2018.01.004 · Cited by 29
The Role of the Rumen Microbiota in Determining the Feed Efficiency of Dairy Cows
Mizrahi, I. (2011) · Springer eBooks · doi:10.1007/978-3-642-21680-0_14 · Cited by 28
Self-citationXiang, R., McNally, J., Rowe, S. J., Jonker, A., Pinares-Patiño, C. S., Oddy, V. H., Vercoe, P. E., McEwan, J. C., & Dalrymple, B. P. (2016) · Scientific Reports · doi:10.1038/srep39022 · Cited by 26
Evidence for methane oxidation in rumen fluid in vitro
Valdés, C., Newbold, C. J., Hillman, K., & Wallace, R. J. (1996) · Annales de Zootechnie · doi:10.1051/animres:19960680 · Cited by 15
Self-citationDonoghue, K. A., Bird-Gardiner, T. L., Arthur, P. F., Herd, R. M., & Hegarty, R. (2015) · EPubDev Repository · Cited by 10
Research works printed but not linked: 4
- Luckey, T. Germfree Life and Gnotobiology (Elsevier, 2012).
- Hobson, P. N. & Stewart, C. S. The Rumen Microbial Ecosystem (Springer Science & Business Media, 2012).
- Friedman, N., Jami, E. & Mizrahi, I. Compositional and functional dynamics of the bovine rumen methanogenic community across different developmental stages. Environ. Microbiol. 19, 3365–3373 (2017). · DOI · Paper page
- Wright, A. D. G. & Hook, S. E. 16 Manipulation of microbial ecology for sustainable animal production. Sustain. Anim. Agr. https://doi.org/10.1079/9781780640426.0254254 (2013). · DOI
Cited by
Sorted by citations
Prevotella: A Key Player in Ruminal Metabolism
Betancur-Murillo, C. L., Aguilar-Marín, S. B., & Jovel, J. (2022) · Microorganisms · doi:10.3390/microorganisms11010001 · Cited by 304
Xue, M., Xie, Y., Zhong, Y., Ma, X., Sun, H., & Liu, J. (2022) · Microbiome · doi:10.1186/s40168-022-01228-9 · Cited by 198
Emergent coexistence in multispecies microbial communities
Chang, C., Bajić, D., Vila, J. C. C., Estrela, S., & Sánchez, Á. (2023) · Science · doi:10.1126/science.adg0727 · Cited by 170
Lignocellulose degradation by rumen bacterial communities: New insights from metagenome analyses
Gharechahi, J., Vahidi, M. F., Sharifi, G., Ariaeenejad, S., Ding, X., Han, J., & Salekdeh, G. H. (2023) · Environmental Research · doi:10.1016/j.envres.2023.115925 · Cited by 171
Arshad, M. A., Hassan, F., Rehman, M. S.-U., Huws, S., Cheng, Y., & Din, A. U. (2021) · Animal nutrition · doi:10.1016/j.aninu.2021.03.004 · Cited by 151
Metadata
- Authors
- Mizrahi, I., Wallace, R. J., & Moraïs, S.
- Affiliations
- Ben-Gurion University of the Negev (IL)
- University of Aberdeen (GB)
- Venue
- Nature Reviews Microbiology
- Published
- 2021-05-12
- Volume
- 19
- Issue
- 9
- Pages
- 553-566
- ISSN
- 1740-1526 (ISSN-L)
- 1740-1534
- OpenAlex
- W3160905321
- Cited by
- 490
- References
- 178
- Citations by year
- 2026: 111 · 2025: 124 · 2024: 139 · 2023: 69 · 2022: 41 · 2021: 6
- FWCI
- 9.56
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Nature Reviews Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Ruminant Nutrition and Digestive Physiology
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Anaerobic Digestion and Biogas Production
- Physical Sciences › Environmental Science › Ecology › Agriculture Sustainability and Environmental Impact
- Keywords
- rumen microbiome, ruminants, methane mitigation, greenhouse gas emissions, host-microbiome interactions, microbial fermentation, food security, environmental impact, ruminant digestion
- MeSH terms
- Gastrointestinal Microbiome, Food Security, Animals, Bacteria, Environment, Rumen, Ruminants
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review