Cited by 383Cholesterol and Lipid MetabolismMicroRNA in disease regulationLipid metabolism and biosynthesis

The DOI matches its Crossref record; 60 of the 60 references it cites were found in a registry or an index; 19 of the 43 sources its claims cite were checked for support.

Expression of miR-33 from an SREBP2 Intron Inhibits Cholesterol Export and Fatty Acid Oxidation*

Open access

Abstract

The regulation of synthesis, degradation, and distribution of lipids is crucial for homeostasis of organisms and cells. The sterol regulatory element-binding protein (SREBP) transcription factor family is post-translationally activated in situations of reduced lipid abundance and activates numerous genes involved in cholesterol, fatty acid, and phospholipid synthesis. In this study, we provide evidence that the primary transcript of SREBP2 contains an intronic miRNA (miR-33) that reduces cellular cholesterol export via inhibition of translation of the cholesterol export pump ABCA1. Notably, miR-33 also inhibits translation of several transcripts encoding proteins involved in fatty acid β-oxidation including CPT1A, HADHB, and CROT, thereby reducing fatty acid degradation. The genetic locus encoding SREBP2 and miR-33 therefore contains a protein that increases lipid synthesis and a miRNA that prevents export and degradation of newly synthesized lipids. These results add an additional layer of complexity to our understanding of lipid homeostasis and might open possibilities for future therapeutic intervention.

Overview

AI snapshot

Written from the paper’s full text.

TL;DR

miR-33a is encoded in an intron of SREBP2 and directly represses ABCA1, CPT1A, HADHB, and CROT, thereby reducing cholesterol export and fatty acid β-oxidation while increasing cellular lipids. This bifunctional locus couples lipid synthesis with suppression of lipid export and degradation.

Key findings

  • miR-33a localizes to an intron of SREBP2 and is evolutionarily conserved; reporter assays show it targets the ABCA1 3′ UTR, and seed-region mutations abolish this response.
  • Overexpression of miR-33 reduces endogenous ABCA1 protein and apoAI-dependent cholesterol export in HepG2 and THP1 cells; miR-33 sponges and antagomirs increase ABCA1 protein and cholesterol export.
  • miR-33 targets CPT1A, HADHB, and CROT 3′ UTRs; overexpression suppresses HADHB and CPT1A protein, reduces CROT mRNA, causes a 20% reduction in mitochondrial β-oxidation, and increases cellular free fatty acids and triacylglycerides.
  • The Drosophila CPT1 3′ UTR contains a conserved functional miR-33 binding site, suggesting ancient regulation of β-oxidation.

Methods

  • Reporter assays used luciferase constructs containing wild-type or mutated 3′ UTRs cotransfected with pre-miR-33 or control; lentiviral miR-33 overexpression, miRNA sponges, and antagomirs were tested in HepG2, THP1, Y1, and 293T cells, with Western blot, qPCR, and Northern blot readouts.
  • Cholesterol export was measured using [1,2-3H]cholesterol and apoAI; β-oxidation was measured by conversion of [9,10-3H]palmitic acid to water in the presence or absence of etomoxir; lipids were analyzed by TLC.
  • Male C57/BL6 mice were fed chow or a high-fat diet (60% calories from fat) for 16 weeks starting at 4 or 8 weeks of age; miR-33 levels were assessed by Northern blot. Analyses used normalized luciferase activity, Student’s t tests, and means ± S.D. or S.E.

Limitations

  • Stated: no specific CROT Western blot was obtained; miR-33 inhibition did not reproducibly increase β-oxidation or HADHB/CPT1A protein in HepG2 cells; fasting and high-fat-diet mouse livers showed no significant miR-33 changes, with only a small non-significant trend toward lower levels on high-fat diet; preliminary TLC/gas chromatography did not support altered fatty acid chain lengths; future in vivo experiments are needed.
  • Evident: many mechanistic conclusions rely on cell lines, overexpression, and reporter assays, so in vivo regulation and therapeutic relevance remain unestablished; several results are described as data not shown.

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Integrity signals

Registry

Crossref · 10.1074/jbc.m110.152090

Cites

60 of 60 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Figures

Image 1
CC-BY · From the PDF
FIGURE 2 miR-33 targets the ABCA1 3 ′ UTR for translational inhibition. A, predicted annealing of human miR-33a to the ABCA1 3 ′ UTR. Asterisks denote the bases changed in the mutant constructs. B, reporter assay to assess the influence of miR-33 on the ABCA1 3 ′ UTR. 293T cells were transfectedwithaconstructcarryingpartoftheABCA13 ′ UTR( ABCA1 ), a mutant of the ABCA1 3 ′ UTR with site-directed mutagenesis of the sequence complementary to the miR-33 seed ( ABCA1 MUT ), or the parental pGL3 control plasmid ( control ) in the presence of a synthetic pre-miR-33 or a negative control pre-miRNA. Values are normalized to the activity of a constitutively active Renilla luciferase expression construct and represented as mean ± S.D. of triplicates. Asterisk denotes p < 0.05 in Student's t test ( n = 3).
FIGURE 2 miR-33 targets the ABCA1 3 ′ UTR for translational inhibition. A, predicted annealing of human miR-33a to the ABCA1 3 ′ UTR. Asterisks denote the bases changed in the mutant constructs. B, reporter assay to assess the influence of miR-33 on the ABCA1 3 ′ UTR. 293T cells were transfectedwithaconstructcarryingpartoftheABCA13 ′ UTR( ABCA1 ), a mutant of the ABCA1 3 ′ UTR with site-directed mutagenesis of the sequence complementary to the miR-33 seed ( ABCA1 MUT ), or the parental pGL3 control plasmid ( control ) in the presence of a synthetic pre-miR-33 or a negative control pre-miRNA. Values are normalized to the activity of a constitutively active Renilla luciferase expression construct and represented as mean ± S.D. of triplicates. Asterisk denotes p < 0.05 in Student's t test ( n = 3).CC-BY · From the PDF
FIGURE 3 miR-33 reduces endogenous ABCA1 protein levels and modulates cellular cholesterol export in HepG2 cells. A and B , HepG2 cells were transduced with lentiviral constructs driving constitutive expression of miR33a ( miR-33 ) or a control construct ( control ). Western blot analysis ( A ) and apoAI-dependent cholesterol export ( B ) were performed after incubation for 16 h in the presence or absence of the LXR agonist T0901317. Values represent mean ± S.E. of 6 replicates. Asterisks denote p < 0.05 in Student's t test ( n = 6). HepG2 cells were transduced with miRNA sponges targeting miR-33 or a control construct. Western blot analysis (two replicates are shown) ( C ) and apoAI-dependent cholesterol export ( D ) were performed in the absence of T0901317 and are represented as in A and B . HepG2 were transfected with cholesterol-coupled antisense oligonucleotides (antagomir) targeting miR33a and miR-33b (equal amounts) or a negative control ( i.e. the sense sequence of Arabidopsis thaliana miRNA159a). Western blot analysis ( E ) and apoAI-dependent cholesterol export ( F ) were performed 48 h after transfection and are represented as above ( n = 6).
FIGURE 3 miR-33 reduces endogenous ABCA1 protein levels and modulates cellular cholesterol export in HepG2 cells. A and B , HepG2 cells were transduced with lentiviral constructs driving constitutive expression of miR33a ( miR-33 ) or a control construct ( control ). Western blot analysis ( A ) and apoAI-dependent cholesterol export ( B ) were performed after incubation for 16 h in the presence or absence of the LXR agonist T0901317. Values represent mean ± S.E. of 6 replicates. Asterisks denote p < 0.05 in Student's t test ( n = 6). HepG2 cells were transduced with miRNA sponges targeting miR-33 or a control construct. Western blot analysis (two replicates are shown) ( C ) and apoAI-dependent cholesterol export ( D ) were performed in the absence of T0901317 and are represented as in A and B . HepG2 were transfected with cholesterol-coupled antisense oligonucleotides (antagomir) targeting miR33a and miR-33b (equal amounts) or a negative control ( i.e. the sense sequence of Arabidopsis thaliana miRNA159a). Western blot analysis ( E ) and apoAI-dependent cholesterol export ( F ) were performed 48 h after transfection and are represented as above ( n = 6).CC-BY · From the PDF
FIGURE 4 miR-33 reduces endogenous ABCA1 protein levels and modulates cellular cholesterol export in THP1 macrophages. A , Western blot analysis of THP1 cells engineered to express miR-33a under the control of a doxycyclin-dependentpromoter( THP1miR-33 ) or control cells ( THP1control ). Cells were differentiated into macrophages by treatment with PMA for 3 days. Protein lysates were analyzed upon treatment with or without doxycyclin for 24 h and the LXR agonist T0901317 for 16 h. B , apoAI-dependent cellular cholesterol export was measured in the absence or presence of doxycyclin for 24hupontreatmentfor16hwiththeLXRagonistT0901317( n = 7). Error bars denote ± S.D.
FIGURE 4 miR-33 reduces endogenous ABCA1 protein levels and modulates cellular cholesterol export in THP1 macrophages. A , Western blot analysis of THP1 cells engineered to express miR-33a under the control of a doxycyclin-dependentpromoter( THP1miR-33 ) or control cells ( THP1control ). Cells were differentiated into macrophages by treatment with PMA for 3 days. Protein lysates were analyzed upon treatment with or without doxycyclin for 24 h and the LXR agonist T0901317 for 16 h. B , apoAI-dependent cellular cholesterol export was measured in the absence or presence of doxycyclin for 24hupontreatmentfor16hwiththeLXRagonistT0901317( n = 7). Error bars denote ± S.D.CC-BY · From the PDF
Image 5
CC-BY · From the PDF
FIGURE6 miR-33reduces 𝛃 -oxidationandalterscellularfattyacidmetabolism. A, Westernblotanalysis of HepG2 cells transduced with lentiviral constructs driving expression of miR-33a ( miR-33 ) or a control plasmid. Twobiological replicates are shown. Loading control denotes an unspecific band in recognized by the HADHB antibody to demonstrate even loading of samples. B, quantitative RT-PCR for ABCA1 , CROT , and CPT1A was performed in the same cells as in A . Expression was normalized to the abundance of U6 expression using the 2 -d Ct method. Note that these data are derived from six biological replicates and standard deviations are depicted to facilitate interpretation. The asterisk denotes p < 0.05 in Student's t test ( n = 6). C, cellular 𝛃 -oxidation was assessed by measuring conversion of [9,103 H]palmitic acid into water in the cells represented in A . Values represent counts per protein amount in each well and are mean ± S.E. The asterisk denotes p < 0.05 in Student's t test ( n = 6). D, quantification of lipid distribution in the cells described in A by TLC. Lipids were stained with the fluorescent dye Primulin and quantified using a fluorescent image scanner. Representative TLC are shown in supplemental Fig. S11 and values are shown as mean ± S.D. ( n = 3).
FIGURE6 miR-33reduces 𝛃 -oxidationandalterscellularfattyacidmetabolism. A, Westernblotanalysis of HepG2 cells transduced with lentiviral constructs driving expression of miR-33a ( miR-33 ) or a control plasmid. Twobiological replicates are shown. Loading control denotes an unspecific band in recognized by the HADHB antibody to demonstrate even loading of samples. B, quantitative RT-PCR for ABCA1 , CROT , and CPT1A was performed in the same cells as in A . Expression was normalized to the abundance of U6 expression using the 2 -d Ct method. Note that these data are derived from six biological replicates and standard deviations are depicted to facilitate interpretation. The asterisk denotes p < 0.05 in Student's t test ( n = 6). C, cellular 𝛃 -oxidation was assessed by measuring conversion of [9,103 H]palmitic acid into water in the cells represented in A . Values represent counts per protein amount in each well and are mean ± S.E. The asterisk denotes p < 0.05 in Student's t test ( n = 6). D, quantification of lipid distribution in the cells described in A by TLC. Lipids were stained with the fluorescent dye Primulin and quantified using a fluorescent image scanner. Representative TLC are shown in supplemental Fig. S11 and values are shown as mean ± S.D. ( n = 3).CC-BY · From the PDF
FIGURE 7 Conserved targeting of the 𝛃 -oxidation gene CPTI in the cholesterol auxotrophs Drosophila . A, evolutionary conservation of the predicted miR-33 binding site in the 3 ′ UTR of the Drosophila , Anopheles , and C. intestinalis CPT1 transcripts. B, reporter gene experiment using the 3 ′ UTR of the CPT1 transcript ( CPT1 ) or mutants containing site-directed mutations of the predicted miR-33 seed binding region ( CPT1 MUT ) were cotransfected with pre-miR-33 or a pre-miR control, and evaluated identically to the experiment described in the legend to Fig. 2 B . The asterisk denotes p < 0.05 in Student's t test ( n = 3). Error bars denote S.D.
FIGURE 7 Conserved targeting of the 𝛃 -oxidation gene CPTI in the cholesterol auxotrophs Drosophila . A, evolutionary conservation of the predicted miR-33 binding site in the 3 ′ UTR of the Drosophila , Anopheles , and C. intestinalis CPT1 transcripts. B, reporter gene experiment using the 3 ′ UTR of the CPT1 transcript ( CPT1 ) or mutants containing site-directed mutations of the predicted miR-33 seed binding region ( CPT1 MUT ) were cotransfected with pre-miR-33 or a pre-miR control, and evaluated identically to the experiment described in the legend to Fig. 2 B . The asterisk denotes p < 0.05 in Student's t test ( n = 3). Error bars denote S.D.CC-BY · From the PDF
FIGURE8 miR-33cooperateswith SREBP stomaintaincellularlipidlevels. A , schematic representation of the regulatory network in mammals. B, schematic representation of the regulatory network in the cholesterol auxotroph D. melanogaster .
FIGURE8 miR-33cooperateswith SREBP stomaintaincellularlipidlevels. A , schematic representation of the regulatory network in mammals. B, schematic representation of the regulatory network in the cholesterol auxotroph D. melanogaster .CC-BY · From the PDF

Verification

Claims the paper makes

44 Own result · 25 Own interpretation · 15 No full text of the sources · 8 Partly supported · 6 Supported · 5 No basis given · 1 Sources not found · 1 Not checked yet · accuracy not yet measured

Verify all 1 references — free account

Show all 52 claims

  • Probably not a substantial claim. 32
  • It may state two separate claims as one. 30
  • The quote only partly states this claim. 1
53 of 53
  • The paper relies on this without support.

    The 500-bp genomic region surrounding miR-33a used in lentiviral vectors specifically expresses miR-33a without affecting other genes or small RNAs.

    “we transduced HepG2 cells with a lentiviral expression vector constitutively driving expression of a 500-bp genomic region surrounding the miR-33a sequence.”
  • The paper relies on this without support.

    The antibodies used for Western blot analysis specifically detect their intended targets (ABCA1, HADHB, CPT1A, HADHA, GAPDH, and β-actin).

    “Antibodies were used at the following dilutions: ABCA1 at 1:1,000 (AB.H10, Santa Cruz Biotechnologies), HADHB at 1:1,000 (ARP48133, Aviva Systems Biology, San Diego, CA), HADHA at 1:1,000 (HPA015536, Sigma), CPT1 1:1000 (Proteintech, Manchester, UK), GAPDH at 1:2,000 (6C5, Pierce-ThermoFisher), and ␤-actin at 1:10,000 (AC-40, Sigma).”
  • The paper relies on this without support.

    The miRNA sponges and antagomirs specifically inhibit miR-33 without off-target effects.

    “miR-33 antagomir denotes a 1:1 mixture of miR-33a and miR-33b antagomir.”
  • The paper relies on this without support.

    D. melanogaster and other Drosophilids are cholesterol auxotrophs (cannot synthesize cholesterol).

    “Notably, miR-33 is highly conserved in D. melanogaster (and other Drosophilids), which are auxotrophs for cholesterol, i.e. they cannot synthesize cholesterol.”
  • The paper relies on this without support.

    SREBPs of higher organisms help to coordinately induce genes involved in cholesterol, fatty acid, and phospholipid synthesis.

    “As mentioned above, SREBPs of higher organisms help to coordinately induce genes involved in cholesterol, fatty acid, and phospholipid synthesis.”
  • The paper relies on this without support.

    Activation of SREBPs stimulates transcription of several genes involved in fatty acid synthesis.

    “Activation of SREBPs stimulates transcription of several genes involved in fatty acid synthesis.”
  • The paper relies on this without support.

    CPT1A is the rate-limiting and most highly regulated step in β-oxidation.

    “As mentioned before, CPT1A is the rate-limiting and most highly regulated step in ␤-oxidation.”
  • The paper relies on this without support.

    CROT and CPT1A are enzymes that couple fatty acids to carnitine.

    “CROT and CPT1A are enzymes that couple fatty acids to carnitine.”
  • The paper relies on this without support.

    The protein product of the HADHB transcript forms the β-subunit of the mitochondrial trifunctional protein, which carries out three steps of β-oxidation.

    “The protein product of the HADHB transcript forms the ␤-subunit of the mitochondrial trifunctional protein, which carries out three steps of ␤-oxidation.”
  • The paper relies on this without support.

    No single mouse model or feeding regimen reliably reproduces the features of NAFLD and NASH.

    “Unfortunately, no single mouse model or feeding regimen reliably reproduces the features of NAFLD and NASH.”
10 of 10

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Citations

Cites

Show all 60 references

Research works printed but not linked: 2

  1. Marti, 2010, Nucleic Acids Res.
  2. Yvan-Charvet, 2007, J. Clin. Invest., 117, 3900

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Items 301–383 of 383

Metadata

Authors
Gerin, I., Clerbaux, L.-A., Haumont, O., Lanthier, N., Das, A. K., Burant, C. F., Leclercq, I. A., MacDougald, O. A., & Bommer, G. T.
Affiliations
  • de Duve Institute (BE)
  • UCLouvain (BE)
  • Michigan Medicine (US)
  • University of Michigan (US)
Corresponding author
Bommer, Guido T.
Venue
Journal of Biological Chemistry
Publisher
Elsevier BV
Published
2010-10
Volume
285
Issue
44
Pages
33652-33661
ISSN
0021-9258 (ISSN-L)
OpenAlex
W2012616814
Cited by
382
References
60
Citations by year
2026: 12 · 2025: 10 · 2024: 14 · 2023: 16 · 2022: 17 · 2021: 29 · 2020: 15 · 2019: 18 · 2018: 24 · 2017: 25 · 2016: 42 · 2015: 28 · 2014: 36 · 2013: 50 · 2012: 23
FWCI
29.85
Type
journal article
Language
en
Open access
Locations
  • Journal of Biological Chemistry (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (submittedVersion)
  • PubMed Central (submittedVersion)
  • Digital Access to Libraries (submittedVersion)
Funders
  • Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture
  • National Institute of Diabetes and Digestive and Kidney Diseases (5P30DK089503, R01 DK051563, DK-51563, P30 DK089503)
  • Michigan Nutrition Obesity Research Center, Medical School, University of Michigan
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Cholesterol and Lipid Metabolism
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Lipid metabolism and biosynthesis
Keywords
miR-33, SREBP2, intronic microRNA, ABCA1, cholesterol export, fatty acid beta-oxidation, CPT1A, HADHB, lipid homeostasis, SREBP, protein synthesis inhibition
MeSH terms
Animals, Cholesterol, Fatty Acids, Gene Expression Regulation, Humans, Introns, Male, Mice, Inbred C57BL, Phospholipids, Lentivirus, MicroRNAs, Mice, Sterol Regulatory Element Binding Protein 2

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