The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
Open accessAbstract
Summary: We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one application GO annotation based on similarity searches with statistical analysis and highlighted visualization on directed acyclic graphs. This tool offers a suitable platform for functional genomics research in non-model species. B2G is an intuitive and interactive desktop application that allows monitoring and comprehension of the whole annotation and analysis process. Availability: Blast2GO is freely available via Java Web Start at http://www.blast2go.de Supplementary material: http://www.blast2go.de -> Evaluation Contact: aconesa@ivia.es; stefang@fis.upv.es
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Research works printed but not linked: 6
- Al-Shahrour, F., et al. 2004FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics20578–580 · DOI · Paper page
- Blüthgen, N., Brand, K., Cajavec, B., Swat, M., Herzel, H., Beule, D. 2004Biological Profiling of Gene Groups utilizing Gene Ontology – A Statistical Framework. arXiv:q-bio.GN/040703411
- Doniger, S., et al. 2003MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol.4R7 · DOI
- Groth, D., et al. 2004GOblet: a platform for Gene Ontology annotation of anonymous sequence data. Nucleic Acids Res.32313–317 · DOI
- Martin, D., et al. 2004GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinformatics5178 · DOI · Paper page
- Zehetner, G. 2003OntoBlast function: from sequence similarities directly to potential functional annotations by ontology terms. Nucleic Acids Res.313799–3803 · DOI
Cited by
A survey of best practices for RNA-seq data analysis
Conesa, A., Madrigal, P., Tarazona, S., Gomez-Cabrero, D., Cervera, A., McPherson, A., Szcześniak, M. W., Gaffney, D. J., Elo, L. L., Zhang, X., et al. (2016) · Genome Biology · doi:10.1186/s13059-016-0881-8 · Cited by 2,794
Self-citationPhylogenomics resolves the timing and pattern of insect evolution
Misof, B., Liu, S., Meusemann, K., Peters, R. S., Donath, A., Mayer, C., Frandsen, P. B., Ware, J., Flouri, T., Beutel, R. G., et al. (2014) · Science · doi:10.1126/science.1257570 · Cited by 2,694
agriGO: a GO analysis toolkit for the agricultural community
Du, Z., Zhou, X., Ling, Y., Zhang, Z., & Su, Z. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq310 · Cited by 2,396
A large-scale evaluation of computational protein function prediction
Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., et al. (2013) · Nature Methods · doi:10.1038/nmeth.2340 · Cited by 1,028
Individual intestinal symbionts induce a distinct population of RORγ + regulatory T cells
Sefik, E., Geva-Zatorsky, N., Oh, S., Konnikova, L., Zemmour, D., McGuire, A. M., Burzyn, D., Ortiz-Lopez, A., Lobera, M., Yang, J., et al. (2015) · Science · doi:10.1126/science.aaa9420 · Cited by 879
Vieler, A., Wu, G., Tsai, C.-H., Bullard, B., Cornish, A. J., Harvey, C., Reca, I.-B., Thornburg, C., Achawanantakun, R., Buehl, C. J., et al. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1003064 · Cited by 458
Muñoz, J. F., Gade, L., Chow, N. A., Loparev, V. N., Juieng, P., Berkow, E. L., Farrer, R. A., Litvintseva, A. P., & Cuomo, C. A. (2018) · Nature Communications · doi:10.1038/s41467-018-07779-6 · Cited by 458
Wang, Z., Fang, B., Chen, J., Zhang, X., Luo, Z., Huang, L., Chen, X., & Li, Y. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-726 · Cited by 433
Parchman, T. L., Geist, K. S., Grahnen, J. A., Benkman, C. W., & Buerkle, C. A. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-180 · Cited by 446
Gan, P., Ikeda, K., Irieda, H., Narusaka, M., O'Connell, R. J., Narusaka, Y., Takano, Y., Kubo, Y., & Shirasu, K. (2013) · New Phytologist · doi:10.1111/nph.12085 · Cited by 379
The population genetics of structural variants in grapevine domestication
Zhou, Y., Minio, A., Massonnet, M., Solares, E., Lv, Y., Beridze, T., Cantu, D., & Gaut, B. S. (2019) · Nature Plants · doi:10.1038/s41477-019-0507-8 · Cited by 339
The Capsaspora genome reveals a complex unicellular prehistory of animals
Suga, H., Chen, Z., de Mendoza, A., Sebé-Pedrós, A., Brown, M. W., Kramer, E., Carr, M., Kerner, P., Vervoort, M., Sánchez-Pons, N., et al. (2013) · Nature Communications · doi:10.1038/ncomms3325 · Cited by 317
Riesgo, A., Farrar, N., Windsor, P. J., Giribet, G., & Leys, S. P. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu057 · Cited by 266
Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing
Wang, B., Guo, G., Wang, C., Lin, Y., Wang, X., Zhao, M., Guo, Y., He, M., Zhang, Y., & Pan, L. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq256 · Cited by 227
Guarnieri, M. T., Nag, A., Smolinski, S. L., Darzins, A., Seibert, M., & Pienkos, P. T. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025851 · Cited by 234
Robertson, F. M., Gundappa, M. K., Grammes, F., Hvidsten, T. R., Redmond, A. K., Lien, S., Martin, S. A. M., Holland, P. W. H., Sandve, S. R., & Macqueen, D. J. (2017) · Genome Biology · doi:10.1186/s13059-017-1241-z · Cited by 212
Firon, N., LaBonte, D., Villordon, A., Kfir, Y., Solis, J., Lapis, E., Perlman, T., Doron-Faigenboim, A., Hetzroni, A., Althan, L., et al. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-460 · Cited by 182
Lightbody, G., Haberland, V., Browne, F., Taggart, L., Zheng, H., Parkes, E., & Blayney, J. K. (2019) · Briefings in Bioinformatics · doi:10.1093/bib/bby051 · Cited by 173
Tao, X., Gu, Y.-H., Wang, H.-Y., Zheng, W., Li, X., Zhao, C.-W., & Zhang, Y.-Z. (2012) · PLoS ONE · doi:10.1371/journal.pone.0036234 · Cited by 168
Gravouil, K., Ferru-Clément, R., Colas, S., Helye, R., Kadri, L., Bourdeau, L., Moumen, B., Mercier, A., & Ferreira, T. (2017) · Environmental Science & Technology · doi:10.1021/acs.est.7b00846 · Cited by 158
Pluripotency and the origin of animal multicellularity
(2019) · doi:10.1038/s41586-019-1290-4 · Cited by 146
Wang, H., Alvarez, S., & Hicks, L. M. (2012) · Journal of Proteome Research · doi:10.1021/pr2008225 · Cited by 142
Kim, S. H., Iyer, K. R., Pardeshi, L., Muñoz, J. F., Robbins, N., Cuomo, C. A., Wong, K. H., & Cowen, L. E. (2019) · mBio · doi:10.1128/mbio.02529-18 · Cited by 136
Cormier, A., Avia, K., Sterck, L., Derrien, T., Wucher, V., Andres, G., Monsoor, M., Godfroy, O., Lipinska, A., Perrineau, M., et al. (2017) · New Phytologist · doi:10.1111/nph.14321 · Cited by 103
Schafleitner, R., Tincopa, L. R., Palomino, O., Rossel, G., Robles, R. F., Alagon, R., Rivera, C., Quispe, C., Rojas, L., Pacheco, J. A., et al. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-604 · Cited by 95
Zhang, K., Wu, Z., Tang, D., Luo, K., Lu, H., Liu, Y., Dong, J., Wang, X., Lv, C., Wang, J., et al. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.00914 · Cited by 88
Cecchin, M., Marcolungo, L., Rossato, M., Girolomoni, L., Cosentino, E., Cuine, S., Li‐Beisson, Y., Delledonne, M., & Ballottari, M. (2019) · The Plant Journal · doi:10.1111/tpj.14508 · Cited by 83
Candida auris Phenotypic Heterogeneity Determines Pathogenicity In Vitro
Brown, J. L., Delaney, C., Short, B., Butcher, M. C., McKloud, E., Williams, C., Kean, R., & Ramage, G. (2020) · mSphere · doi:10.1128/msphere.00371-20 · Cited by 76
Genetic basis of priority effects: insights from nectar yeast
Dhami, M. K., Hartwig, T., & Fukami, T. (2016) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2016.1455 · Cited by 60
A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases
Zolotareva, O., & Kleine, M. (2019) · Journal of Integrative Bioinformatics · doi:10.1515/jib-2018-0069 · Cited by 46
Wang, Z., Fang, B., Chen, X., Liao, M., Chen, J., Zhang, X., Huang, L., Luo, Z., Yao, Z., & Li, Y. (2015) · BMC Plant Biology · doi:10.1186/s12870-015-0567-5 · Cited by 42
Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral
Oldach, M. J., Workentine, M., Matz, M. V., Fan, T., & Vize, P. D. (2017) · Molecular Ecology · doi:10.1111/mec.14043 · Cited by 39
Potential Role of Lysine Acetylation in Antibiotic Resistance of Escherichia coli
Fang, Z., Lai, F., Cao, K., Zhang, Z., Cao, L., Liu, S., Duan, Y., Yin, X., Ge, R., He, Q.-Y., et al. (2022) · mSystems · doi:10.1128/msystems.00649-22 · Cited by 40
A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797)
Destanović, D., Schultz, D. T., Styfhals, R., Cruz, F., Gómez-Garrido, J., Gut, M., Gut, I., Fiorito, G., Simakov, O., Alioto, T. S., et al. (2023) · G3: Genes, Genomes, Genetics · doi:10.1093/g3journal/jkad220 · Cited by 36
Zheng, W., Tan, M. F., Old, L. A., Paterson, I. C., Jakubovics, N. S., & Choo, S. W. (2017) · Scientific Reports · doi:10.1038/s41598-017-02399-4 · Cited by 34
Liu, Q., Rise, M. L., Spitsbergen, J. M., Hori, T. S., Mieritz, M., Geis, S., McGraw, J. E., Goetz, G., Larson, J., Hutz, R. J., et al. (2013) · Aquatic Toxicology · doi:10.1016/j.aquatox.2013.06.018 · Cited by 21
Interactome Analysis Identifies MSMEI_3879 as a Substrate of Mycolicibacterium smegmatis ClpC1
Ogbonna, E. C., Anderson, H. R., Beardslee, P. C., Bheemreddy, P., & Schmitz, K. R. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.04548-22 · Cited by 15
Decoding functional proteome information in model organisms using protein language models
Barrios-Núñez, I., Martínez-Redondo, G. I., Medina-Burgos, P., Cases, I., Fernández, R., & Rojas, A. M. (2024) · NAR Genomics and Bioinformatics · doi:10.1093/nargab/lqae078 · Cited by 13
Genome Sequence of Citrobacter Sp. Strain A1, a Dye-Degrading Bacterium
Chan, G. F., Gan, H. M., & Rashid, N. A. A. (2012) · Journal of Bacteriology · doi:10.1128/jb.01285-12 · Cited by 13
Ames, R. (2017) · Microorganisms · doi:10.3390/microorganisms5010003 · Cited by 10
Qin, X., Tian, C., & Meng, F. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24087411 · Cited by 10
Tan, Y., Wang, C., Schneider, T., Li, H., de Souza, R. F., Tang, X., Swisher Grimm, K. D., Hsieh, T.-F., Wang, X., Li, X., et al. (2021) · Microbiology Spectrum · doi:10.1128/spectrum.00509-21 · Cited by 10
Duchatelet, L., Galeazzo, G. A., Coubris, C., Bridoux, L., Rezsohazy, R., Melo, M. R. S., Marek, M., Amaral, D. T., Dupont, S., Garbuglio de Oliveira, A., et al. (2025) · Open Biology · doi:10.1098/rsob.240262 · Cited by 6
Franco, M. E., Bitencourt, T. A., Marins, M., & Fachin, A. L. (2017) · Database · doi:10.1093/database/bax035 · Cited by 4
Metadata
- Authors
- Conesa, A., Götz, S., García-Gómez, J. M., Terol, J., Talón, M., & Robles, M.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2005-08-04
- Volume
- 21
- Issue
- 18
- Pages
- 3674-3676
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2164154943
- Cited by
- 11,495
- References
- 2
- FWCI
- 15.90
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
