A selective gut bacterial bile salt hydrolase alters host metabolism
Open accessAbstract
The human gut microbiota impacts host metabolism and has been implicated in the pathophysiology of obesity and metabolic syndromes. However, defining the roles of specific microbial activities and metabolites on host phenotypes has proven challenging due to the complexity of the microbiome-host ecosystem. Here, we identify strains from the abundant gut bacterial phylum Bacteroidetes that display selective bile salt hydrolase (BSH) activity. Using isogenic strains of wild-type and BSH-deleted Bacteroides thetaiotaomicron, we selectively modulated the levels of the bile acid tauro-β-muricholic acid in monocolonized gnotobiotic mice. B. thetaiotaomicron BSH mutant-colonized mice displayed altered metabolism, including reduced weight gain and respiratory exchange ratios, as well as transcriptional changes in metabolic, circadian rhythm, and immune pathways in the gut and liver. Our results demonstrate that metabolites generated by a single microbial gene and enzymatic activity can profoundly alter host metabolism and gene expression at local and organism-level scales.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Bacteroides dorei possesses high BSH activity in vitro.
“B. Dorei possesses high BSH activity in vitro (Yao et al., 2018)”
From Bacteroides dorei BDX-01 alleviates DSS-induced experimental colitis in mice by regulating intestinal bile salt hydrolase activity and the FXR-NLRP3 signaling pathway (2023) · cites this paper as Yao et al., 2018
The Materials and methods list two Bacteroides dorei strains, and the Results describe an in vitro BSH-activity screen of the Bacteroidetes strains. The text available for that screen does not state that B. dorei had high activity; that degree of activity is unsupported. (LLM, conf=0.76)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
Livak, K. J., & Schmittgen, T. D. (2001) · Methods · doi:10.1006/meth.2001.1262 · Cited by 180,860 · see citing works
A SIMPLE METHOD FOR THE ISOLATION AND PURIFICATION OF TOTAL LIPIDES FROM ANIMAL TISSUES
Folch, J., Lees, M., & Stanley, G. H. S. (1957) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)64849-5 · Cited by 65,189 · see citing works
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709 · see citing works
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662 · see citing works
Robinson, M. D., McCarthy, D. J., & Smyth, G. K. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp616 · Cited by 41,364 · see citing works
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010) · Systematic Biology · doi:10.1093/sysbio/syq010 · Cited by 18,376 · see citing works
An obesity-associated gut microbiome with increased capacity for energy harvest
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444 · see citing works
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726 · see citing works
MultiQC: summarize analysis results for multiple tools and samples in a single report
Ewels, P., Magnusson, M., Lundin, S., & Käller, M. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw354 · Cited by 10,143 · see citing works
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785 · see citing works
Gene ontology analysis for RNA-seq: accounting for selection bias
Young, M. D., Wakefield, M. J., Smyth, G. K., & Oshlack, A. (2010) · Genome Biology · doi:10.1186/gb-2010-11-2-r14 · Cited by 7,107 · see citing works
The gut microbiota as an environmental factor that regulates fat storage
Bäckhed, F., Ding, H., Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A., Semenkovich, C. F., & Gordon, J. I. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407076101 · Cited by 6,245 · see citing works
McCarthy, D. J., Chen, Y., & Smyth, G. K. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks042 · Cited by 5,195 · see citing works
Toll-like receptors: critical proteins linking innate and acquired immunity
Akira, S., Takeda, K., & Kaisho, T. (2001) · Nature Immunology · doi:10.1038/90609 · Cited by 4,777 · see citing works
Mutation of the mouse klotho gene leads to a syndrome resembling ageing
Kuro-o, M., Matsumura, Y., Aizawa, H., Kawaguchi, H., Suga, T., Utsugi, T., Ohyama, Y., Kurabayashi, M., Kaname, T., Kume, E., et al. (1997) · Nature · doi:10.1038/36285 · Cited by 3,837 · see citing works
Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
Ridaura, V. K., Faith, J. J., Rey, F. E., Cheng, J., Duncan, A. E., Kau, A. L., Griffin, N. W., Lombard, V., Henrissat, B., Bain, J. R., et al. (2013) · Science · doi:10.1126/science.1241214 · Cited by 3,788 · see citing works
Turnbaugh, P. J., Bäckhed, F., Fulton, L., & Gordon, J. I. (2008) · Cell Host & Microbe · doi:10.1016/j.chom.2008.02.015 · Cited by 2,915 · see citing works
Bile salt biotransformations by human intestinal bacteria
Ridlon, J. M., Kang, D.-J., & Hylemon, P. B. (2006) · Journal of Lipid Research · doi:10.1194/jlr.r500013-jlr200 · Cited by 2,829 · see citing works
Mechanisms underlying the resistance to diet-induced obesity in germ-free mice
Bäckhed, F., Manchester, J. K., Semenkovich, C. F., & Gordon, J. I. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605374104 · Cited by 2,615 · see citing works
Sayin, S. I., Wahlström, A., Felin, J., Jäntti, S., Marschall, H.-U., Bamberg, K., Angelin, B., Hyötyläinen, T., Orešič, M., & Bäckhed, F. (2013) · Cell Metabolism · doi:10.1016/j.cmet.2013.01.003 · Cited by 2,331 · see citing works
Butyrate improves insulin sensitivity and increases energy expenditure in mice
Gao, Z., Yin, J., Zhang, J., Ward, R. E., Martin, R. J., Lefevre, M., Cefalu, W. T., & Ye, J. (2009) · Diabetes · doi:10.2337/db08-1637 · Cited by 2,204 · see citing works
Microbiota-Generated Metabolites Promote Metabolic Benefits via Gut-Brain Neural Circuits
De Vadder, F., Kovatcheva-Datchary, P., Goncalves, D., Vinera, J., Zitoun, C., Duchampt, A., Bäckhed, F., & Mithieux, G. (2014) · Cell · doi:10.1016/j.cell.2013.12.016 · Cited by 2,200 · see citing works
The Enzymes, Regulation, and Genetics of Bile Acid Synthesis
Russell, D. W. (2003) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.72.121801.161712 · Cited by 2,069 · see citing works
Targeted Disruption of the Nuclear Receptor FXR/BAR Impairs Bile Acid and Lipid Homeostasis
Sinal, C. J., Tohkin, M., Miyata, M., Ward, J. M., Lambert, G., & Gonzalez, F. J. (2000) · Cell · doi:10.1016/s0092-8674(00)00062-3 · Cited by 1,819 · see citing works
An Orphan Nuclear Receptor Activated by Pregnanes Defines a Novel Steroid Signaling Pathway
Kliewer, S. A., Moore, J. T., Wade, L., Staudinger, J. L., Watson, M. A., Jones, S. A., McKee, D. D., Oliver, B. B., Willson, T. M., Zetterström, R. H., et al. (1998) · Cell · doi:10.1016/s0092-8674(00)80900-9 · Cited by 1,534 · see citing works
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
Letunić, I., & Peer Bork, B. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr201 · Cited by 1,462 · see citing works
The nuclear receptor PXR is a lithocholic acid sensor that protects against liver toxicity
Staudinger, J. L., Goodwin, B. J., Jones, S. A., Hawkins‐Brown, D., MacKenzie, K. I., Latour, A. M., Liu, Y., Klaassen, C. D., Brown, K. K., Reinhard, J. F., et al. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.051551698 · Cited by 1,378 · see citing works
Strains, functions and dynamics in the expanded Human Microbiome Project
Lloyd-Price, J., Mahurkar, A., Rahnavard, G., Crabtree, J., Orvis, J., Hall, A. B., Brady, A., Creasy, H. H., McCracken, C., Giglio, M. G., et al. (2017) · Nature · doi:10.1038/nature23889 · Cited by 1,267 · see citing works
Bile Salt Hydrolase Activity in Probiotics
Begley, M., Hill, C., & Gahan, C. G. M. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.3.1729-1738.2006 · Cited by 1,187 · see citing works
Vitamin D Receptor As an Intestinal Bile Acid Sensor
Makishima, M., Lu, T. T., Xie, W., Whitfield, G. K., Domoto, H., Evans, R. M., Haussler, M. R., & Mangelsdorf, D. J. (2002) · Science · doi:10.1126/science.1070477 · Cited by 1,176 · see citing works
Jones, B. V., Begley, M., Hill, C., Gahan, C. G. M., & Marchesi, J. R. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0804437105 · Cited by 1,098 · see citing works
Alleviating Cancer Drug Toxicity by Inhibiting a Bacterial Enzyme
Wallace, B. D., Wang, H., Lane, K. T., Scott, J. E., Orans, J., Koo, J. S., Venkatesh, M., Jobin, C., Yeh, L.-A., Mani, S., et al. (2010) · Science · doi:10.1126/science.1191175 · Cited by 1,080 · see citing works
Farnesoid X receptor is essential for normal glucose homeostasis
Ma, K. (2006) · Journal of Clinical Investigation · doi:10.1172/jci25604 · Cited by 883 · see citing works
Identification of a human nuclear receptor defines a new signaling pathway for CYP 3 A induction
Bertilsson, G., Heidrich, J., Svensson, K., Åsman, M., Jendeberg, L., Sydow‐Báckman, M., OHLSSON, R. I., Postlind, H., Blomquist, P., & Berkenstam, A. L. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.21.12208 · Cited by 873 · see citing works
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
Segata, N., Börnigen, D., Morgan, X. C., & Huttenhower, C. (2013) · Nature Communications · doi:10.1038/ncomms3304 · Cited by 829 · see citing works
Katsuma, S., Hirasawa, A., & Tsujimoto, G. (2005) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2005.01.139 · Cited by 789 · see citing works
Small molecules from the human microbiota
Donia, M. S., & Fischbach, M. A. (2015) · Science · doi:10.1126/science.1254766 · Cited by 760 · see citing works
Systemic gut microbial modulation of bile acid metabolism in host tissue compartments
Swann, J. R., Want, E. J., Geier, F. M., Spagou, K., Wilson, I. D., Sidaway, J. E., Nicholson, J. K., & Holmes, E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1006734107 · Cited by 726 · see citing works
Li, F., Jiang, C., Krausz, K. W., Li, Y., Albert, I., Hao, H., Fabre, K. M., Mitchell, J. B., Patterson, A. D., & Gonzalez, F. J. (2013) · Nature Communications · doi:10.1038/ncomms3384 · Cited by 705 · see citing works
Dawson, P. A., Lan, T., & Rao, A. (2009) · Journal of Lipid Research · doi:10.1194/jlr.r900012-jlr200 · Cited by 683 · see citing works
Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota
Sérino, M., Luche, É., Grès, S., Baylac, A., Bergé, M., Cénac, C., Waget, A., Klopp, P., Iacovoni, J. S., Klopp, C., et al. (2011) · Gut · doi:10.1136/gutjnl-2011-301012 · Cited by 621 · see citing works
Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut
Joyce, S. A., MacSharry, J., Casey, P. G., Kinsella, M., Murphy, E. F., Shanahan, F., Hill, C., & Gahan, C. G. M. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1323599111 · Cited by 604 · see citing works
Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways
Marcobal, A., Barboza, M., Sonnenburg, E. D., Pudlo, N., Martens, E. C., Desai, P., Lebrilla, C. B., Weimer, B. C., Mills, D. A., German, J. B., et al. (2011) · Cell Host & Microbe · doi:10.1016/j.chom.2011.10.007 · Cited by 574 · see citing works
Intestine-selective farnesoid X receptor inhibition improves obesity-related metabolic dysfunction
Jiang, C., Xie, C., Lv, Y., Li, J., Krausz, K. W., Shi, J., Brocker, C. N., Desai, D., Amin, S. G., Bisson, W. H., et al. (2015) · Nature Communications · doi:10.1038/ncomms10166 · Cited by 559 · see citing works
Molecular Genetics of Circadian Rhythms in Mammals
King, D. P., & Takahashi, J. S. (2000) · Annual Review of Neuroscience · doi:10.1146/annurev.neuro.23.1.713 · Cited by 551 · see citing works
The Farnesoid X Receptor Modulates Adiposity and Peripheral Insulin Sensitivity in Mice
Cariou, B., van Harmelen, K., Durán-Sandoval, D., van Dijk, T. H., Grefhorst, A., Abdelkarim, M., Caron, S., Torpier, G., Fruchart, J., Gonzalez, F. J., et al. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m510258200 · Cited by 546 · see citing works
Bile Acid-Activated Receptors, Intestinal Microbiota, and the Treatment of Metabolic Disorders
Fiorucci, S., & Distrutti, E. (2015) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2015.09.001 · Cited by 539 · see citing works
Bile acid nuclear receptor FXR and digestive system diseases
Ding, L., Yang, L., Wang, Z., & Huang, W. (2015) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2015.01.004 · Cited by 477 · see citing works
Gut microbiota: a potential new territory for drug targeting
Jia, W. P., Li, H., Zhao, L., & Nicholson, J. K. (2008) · Nature Reviews Drug Discovery · doi:10.1038/nrd2505 · Cited by 471 · see citing works
CalR: A Web-Based Analysis Tool for Indirect Calorimetry Experiments
Mina, A. I., LeClair, R. A., LeClair, K. B., Cohen, D. E., Lantier, L., & Banks, A. S. (2018) · Cell Metabolism · doi:10.1016/j.cmet.2018.06.019 · Cited by 458 · see citing works
Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation
Cullen, T. W., Schofield, W. B., Barry, N. A., Putnam, E. E., Rundell, E. A., Trent, M. S., Degnan, P. H., Booth, C. J., Yu, H., & Goodman, A. L. (2015) · Science · doi:10.1126/science.1260580 · Cited by 395 · see citing works
The Farnesoid X-receptor Is an Essential Regulator of Cholesterol Homeostasis
Lambert, G. C., Amar, M. J., Guo, G. L., Brewer, H. B., Gonzalez, F. J., & Sinal, C. J. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m209525200 · Cited by 393 · see citing works
Koropatkin, N. M., Martens, E. C., Gordon, J. I., & Smith, T. J. (2008) · Structure · doi:10.1016/j.str.2008.03.017 · Cited by 375 · see citing works
Zhou, J., Zhai, Y., Mu, Y., Gong, H., Uppal, H., Toma, D., Ren, S., Evans, R. M., & Xie, W. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m511116200 · Cited by 368 · see citing works
Hofmann, A. (1963) · Biochemical Journal · doi:10.1042/bj0890057 · Cited by 353 · see citing works
Kodama, S., Koike, C., Negishi, M., & Yamamoto, Y. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.18.7931-7940.2004 · Cited by 334 · see citing works
Farnesoid X Receptor Deficiency Improves Glucose Homeostasis in Mouse Models of Obesity
Prawitt, J., Abdelkarim, M., Stroeve, J. H. M., Popescu, I. R., Duez, H., Velagapudi, V., Dumont, J., Bouchaert, E., van Dijk, T. H., Lucas, A., et al. (2011) · Diabetes · doi:10.2337/db11-0030 · Cited by 327 · see citing works
Deciphering the nuclear bile acid receptor FXR paradigm
Modica, S., Gadaleta, R. M., & Moschetta, A. (2010) · Nuclear Receptor Signaling · doi:10.1621/nrs.08005 · Cited by 292 · see citing works
Degnan, P. H., Barry, N. A., Mok, K. C., Taga, M. E., & Goodman, A. L. (2014) · Cell Host & Microbe · doi:10.1016/j.chom.2013.12.007 · Cited by 283 · see citing works
Human cecal bile acids: concentration and spectrum
Hamilton, J. P., Xie, G., Raufman, J.-P., Hogan, S., Griffin, T. L., Packard, C. A., Chatfield, D. A., Hagey, L. R., Steinbach, J. H., & Hofmann, A. F. (2007) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00027.2007 · Cited by 263 · see citing works
Kazak, L., Chouchani, E. T., Lu, G. Z., Jedrychowski, M. P., Bare, C. J., Mina, A. I., Kumari, M., Zhang, S., Vučković, I., Laznik-Bogoslavski, D., et al. (2017) · Cell Metabolism · doi:10.1016/j.cmet.2017.08.009 · Cited by 262 · see citing works
Durán-Sandoval, D., Cariou, B., Percevault, F., Hennuyer, N., Grefhorst, A., van Dijk, T. H., Gonzalez, F. J., Fruchart, J., Kuipers, F., & Staels, B. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m501931200 · Cited by 241 · see citing works
Propionate lowers blood glucose and alters lipid metabolism in healthy subjects
Todesco, T., Rao, A., Bosello, O., & Jenkins, D. (1991) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/54.5.860 · Cited by 217 · see citing works
Nagahashi, M., Takabe, K., Liu, R., Peng, K., Wang, X., Wang, Y., Hait, N. C., Wang, X., Allegood, J. C., Yamada, A., et al. (2014) · Hepatology · doi:10.1002/hep.27592 · Cited by 211 · see citing works
Rao, A., Kosters, A., Mells, J. E., Zhang, W., Setchell, K. D. R., Amanso, A. M., Wynn, G. M., Xu, T., Keller, B. T., Yin, H., et al. (2016) · Science Translational Medicine · doi:10.1126/scitranslmed.aaf4823 · Cited by 211 · see citing works
Nakamura, K., Moore, R., Negishi, M., & Sueyoshi, T. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m610072200 · Cited by 203 · see citing works
Lipoexpediency: de novo lipogenesis as a metabolic signal transmitter
Lodhi, I. J., Wei, X., & Semenkovich, C. F. (2010) · Trends in Endocrinology and Metabolism · doi:10.1016/j.tem.2010.09.002 · Cited by 152 · see citing works
PXR Ablation Alleviates Diet-Induced and Genetic Obesity and Insulin Resistance in Mice
He, J., Gao, J., Xu, M., Ren, S., Stefanović-Račić, M., O'Doherty, R. M., & Xie, W. (2013) · Diabetes · doi:10.2337/db12-1039 · Cited by 151 · see citing works
Purification and characterization of bile salt hydrolase from Bacteroides fragilis subsp. fragilis
Stellwag, E. J., & Hylemon, P. B. (1976) · Biochimica et Biophysica Acta (BBA) - Enzymology · doi:10.1016/0005-2744(76)90068-1 · Cited by 145 · see citing works
Rossocha, M., Schultz‐Heienbrok, R., von Moeller, H., Coleman, J. P., & Saenger, W. (2005) · Biochemistry · doi:10.1021/bi0473206 · Cited by 138 · see citing works
PPARγ activators improve glucose homeostasis by stimulating fatty acid uptake in the adipocytes
Martin, G., Schoonjans, K., Staels, B., & Auwerx, J. H. (1998) · Atherosclerosis · doi:10.1016/s0021-9150(97)00315-8 · Cited by 138 · see citing works
Kodama, S., Moore, R., Yamamoto, Y., & Negishi, M. (2007) · Biochemical Journal · doi:10.1042/bj20070481 · Cited by 135 · see citing works
Gao, J., & Xie, W. (2010) · Drug Metabolism and Disposition · doi:10.1124/dmd.110.035568 · Cited by 134 · see citing works
Selective activation of liver X receptor alpha by 6α-hydroxy bile acids and analogs
Song, C. (2000) · Steroids · doi:10.1016/s0039-128x(00)00127-6 · Cited by 126 · see citing works
The Prevalence of Species and Strains in the Human Microbiome: A Resource for Experimental Efforts
Kraal, L., Abubucker, S., Kota, K., Fischbach, M. A., & Mitreva, M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0097279 · Cited by 121 · see citing works
Wang, J., Shoemaker, N. B., Wang, G., & Salyers, A. A. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.12.3559-3571.2000 · Cited by 115 · see citing works
Evolution of the bile salt nuclear receptor FXR in vertebrates*
Reschly, E. J., Ai, N., Ekins, S., Welsh, W. J., Hagey, L. R., Hofmann, A. F., & Krasowski, M. D. (2008) · Journal of Lipid Research · doi:10.1194/jlr.m800138-jlr200 · Cited by 112 · see citing works
Kim, G., Miyamoto, C. M., Meighen, E. A., & Lee, B. H. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.9.5603-5612.2004 · Cited by 105 · see citing works
Grill, J., Schneider, F., Crociani, J., & Ballongue, J. (1995) · Applied and Environmental Microbiology · doi:10.1128/aem.61.7.2577-2582.1995 · Cited by 105 · see citing works
Deconjugation of bile acids by human intestinal bacteria implanted in germ‐free rats
Chikai, T., Nakao, H., & Uchida, K. (1987) · Lipids · doi:10.1007/bf02533948 · Cited by 101 · see citing works
Role of Pregnane X Receptor in Obesity and Glucose Homeostasis in Male Mice
Spruiell, K., Richardson, R. M., Cullen, J. M., Awumey, E. M., Gonzalez, F. J., & Gyamfi, M. A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.494575 · Cited by 94 · see citing works
Bile salt deconjugation by Lactobacillus plantarum 80 and its implication for bacterial toxicity
Boever, P. D., & Verstraete, W. (1999) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.1999.00019.x · Cited by 83 · see citing works
Kawamoto, K., Horibe, I., & Uchida, K. (1989) · The Journal of Biochemistry · doi:10.1093/oxfordjournals.jbchem.a122962 · Cited by 83 · see citing works
Transient impairment of the adaptive response to fasting in FXR‐deficient mice
Cariou, B., van Harmelen, K., Durán-Sandoval, D., van Dijk, T. H., Grefhorst, A., Bouchaert, E., Fruchart, J., Gonzalez, F. J., Kuipers, F., & Staels, B. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.06.033 · Cited by 81 · see citing works
van Dijk, T. H., Grefhorst, A., Oosterveer, M. H., Bloks, V. W., Staels, B., Reijngoud, D., & Kuipers, F. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m807317200 · Cited by 60 · see citing works
Lillienau, J., Schteingart, C. D., & Hofmann, A. F. (1992) · Journal of Clinical Investigation · doi:10.1172/jci115601 · Cited by 53 · see citing works
Fricker, J., Fumeron, F., Clair, D., & Apfelbaum, M. (1989) · PubMed · Cited by 39 · see citing works
CalR: A Web-based Analysis Tool for Indirect Calorimetry ExperimentsPreprint
Mina, A. I., LeClair, R. A., LeClair, K. B., et al. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/213967 · Cited by 35 · see citing works
Self-citationPanigrahi, P., Sule, M., Sharma, R., Ramasamy, S., & Suresh, C. G. (2014) · Microbiology · doi:10.1099/mic.0.077586-0 · Cited by 25 · see citing works
Energy expenditure and locomotor activity in mice selected for food intake adjusted for body weight
Moruppa, S. M. (1990) · Theoretical and Applied Genetics · doi:10.1007/bf00223799 · Cited by 10 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Bile acid metabolites control TH17 and Treg cell differentiation
Hang, S., Paik, D., Yao, L., Kim, E., Trinath, J., Lu, J., Ha, S., Nelson, B. N., Kelly, S. P., Wu, L., et al. (2019) · Nature · doi:10.1038/s41586-019-1785-z · Cited by 1,457 · see citing works
Self-citationMicrobial bile acid metabolites modulate gut RORγ+ regulatory T cell homeostasis
Song, X., Sun, X., Oh, S. F., Wu, M., Zhang, Y., Zheng, W., Geva-Zatorsky, N., Jupp, R., Mathis, D., Benoist, C., et al. (2020) · Nature · doi:10.1038/s41586-019-1865-0 · Cited by 1,024 · see citing works
Gut microbiota-derived bile acids in intestinal immunity, inflammation, and tumorigenesis
Cai, J., Sun, L., & Gonzalez, F. J. (2022) · Cell Host & Microbe · doi:10.1016/j.chom.2022.02.004 · Cited by 869 · see citing works
Human gut bacteria produce ΤΗ17-modulating bile acid metabolites
Paik, D., Yao, L., Zhang, Y., Bae, S., D’Agostino, G. D., Zhang, M., Kim, E., Franzosa, E. A., Avila-Pacheco, J., Bisanz, J. E., et al. (2022) · Nature · doi:10.1038/s41586-022-04480-z · Cited by 594 · see citing works
Song, Z., Cai, Y., Lao, X., Wang, X., Lin, X., Cui, Y., Kalavagunta, P. K., Liao, J., Jin, L., Shang, J., et al. (2019) · Microbiome · doi:10.1186/s40168-019-0628-3 · Cited by 505 · see citing works
Bile Acids as Metabolic Regulators and Nutrient Sensors
Chiang, J. Y. L., & Ferrell, J. M. (2019) · Annual Review of Nutrition · doi:10.1146/annurev-nutr-082018-124344 · Cited by 440 · see citing works
Gut microbiota Turicibacter strains differentially modify bile acids and host lipids
Lynch, J. B., Gonzalez, E. L., Choy, K., Faull, K. F., Jewell, T., Arellano, A., Liang, J., Yu, K. B., Paramo, J., & Hsiao, E. Y. (2023) · Nature Communications · doi:10.1038/s41467-023-39403-7 · Cited by 352 · see citing works
Bile acids in glucose metabolism and insulin signalling — mechanisms and research needs
Ahmad, T. R., & Haeusler, R. A. (2019) · Nature Reviews Endocrinology · doi:10.1038/s41574-019-0266-7 · Cited by 342 · see citing works
Plichta, D. R., Graham, D. B., Subramanian, S., & Xavier, R. J. (2019) · Cell · doi:10.1016/j.cell.2019.07.045 · Cited by 313 · see citing works
A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1
Li, W., Hang, S., Fang, Y., Bae, S., Zhang, Y., Zhang, M., Wang, G., McCurry, M. D., Bae, M., Paik, D., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.07.013 · Cited by 306 · see citing works
Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level
Kenny, D. J., Plichta, D. R., Shungin, D., Koppel, N., Hall, A. B., Fu, B., Vasan, R. S., Shaw, S. Y., Vlamakis, H. C., Balskus, E. P., et al. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.05.013 · Cited by 311 · see citing works
Tavella, T., Rampelli, S., Guidarelli, G., Bazzocchi, A., Gasperini, C., Pujos‐Guillot, E., Comte, B., Barone, M., Biagi, E., Candela, M., et al. (2021) · Gut Microbes · doi:10.1080/19490976.2021.1880221 · Cited by 299 · see citing works
Green, M., Arora, K., & Prakash, S. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21082890 · Cited by 300 · see citing works
The gut microbiome and hypertension
O’Donnell, J. A., Zheng, T., Méric, G., & Marques, F. Z. (2023) · Nature Reviews Nephrology · doi:10.1038/s41581-022-00654-0 · Cited by 294 · see citing works
Foley, M. H., O’Flaherty, S., Barrangou, R., & Theriot, C. M. (2019) · PLOS Pathogens · doi:10.1371/journal.ppat.1007581 · Cited by 271 · see citing works
Microbial impact on cholesterol and bile acid metabolism: current status and future prospects
Kriaa, A., Bourgin, M., Potiron, A., Mkaouar, H., Jablaoui, A., Gérard, P., Maguin, E., & Rhimi, M. (2019) · Journal of Lipid Research · doi:10.1194/jlr.r088989 · Cited by 264 · see citing works
Otaru, N., Ye, K., Mujezinovic, D., Berchtold, L., Constancias, F., Cornejo, F. A., Krzystek, A., de Wouters, T., Braegger, C., Lacroix, C., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.656895 · Cited by 246 · see citing works
Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase
Patterson, A., Rimal, B., Collins, S., Granda, M., Koo, I., Solanka, S., Hoque, N., Gentry, E., Yan, T., Bisanz, J., et al. (2022) · doi:10.21203/rs.3.rs-2050120/v1 · Cited by 245 · see citing works
Inulin fibre promotes microbiota-derived bile acids and type 2 inflammation
Arifuzzaman, M., Won, T. H., Li, T., Yano, H., Digumarthi, S., Heras, A. F., Zhang, W., Parkhurst, C. N., Kashyap, S., Jin, W., et al. (2022) · Nature · doi:10.1038/s41586-022-05380-y · Cited by 234 · see citing works
The changing metabolic landscape of bile acids – keys to metabolism and immune regulation
Mohanty, I., Allaband, C., Mannochio-Russo, H., Abiead, Y. E., Hagey, L. R., Knight, R. D., & Dorrestein, P. C. (2024) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-024-00914-3 · Cited by 227 · see citing works
Jia, B., Zou, Y., Han, X., Bae, J., & Jeon, C. O. (2022) · Trends in Microbiology · doi:10.1016/j.tim.2022.08.003 · Cited by 220 · see citing works
Foley, M. H., O’Flaherty, S., Allen, G., Rivera, A. J., Stewart, A. K., Barrangou, R., & Theriot, C. M. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2017709118 · Cited by 205 · see citing works
Wu, Q., Liang, X., Wang, K., Lin, J., Wang, X., Wang, P., Zhang, Y., Nie, Q., Liu, H., Zhang, Z., et al. (2021) · Cell Metabolism · doi:10.1016/j.cmet.2021.07.007 · Cited by 201 · see citing works
When Rhythms Meet the Blues: Circadian Interactions with the Microbiota-Gut-Brain Axis
Teichman, E. M., O’Riordan, K. J., Gahan, C. G. M., Dinan, T. G., & Cryan, J. F. (2020) · Cell Metabolism · doi:10.1016/j.cmet.2020.02.008 · Cited by 198 · see citing works
Sharpton, S. R., Schnabl, B., Knight, R., & Loomba, R. (2021) · Cell Metabolism · doi:10.1016/j.cmet.2020.11.010 · Cited by 194 · see citing works
Another renaissance for bile acid gastrointestinal microbiology
Ridlon, J. M., & Gaskins, H. R. (2024) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-024-00896-2 · Cited by 193 · see citing works
The gut microbiota and its interactions with cardiovascular disease
Xu, H., Wang, X., Feng, W., Liu, Q., Zhou, S., Liu, Q., & Cai, L. (2020) · Microbial Biotechnology · doi:10.1111/1751-7915.13524 · Cited by 192 · see citing works
Crosstalk between bile acid-activated receptors and microbiome in entero-hepatic inflammation
Thibaut, M. M., & Bindels, L. B. (2022) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2021.12.006 · Cited by 187 · see citing works
Foley, M. H., Walker, M. E., Stewart, A. K., O’Flaherty, S., Gentry, E. C., Patel, S., Beaty, V. V., Allen, G., Pan, M., Simpson, J. B., et al. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01337-7 · Cited by 181 · see citing works
Intersection of the Gut Microbiome and Circadian Rhythms in Metabolism
Frazier, K., & Chang, E. B. (2019) · Trends in Endocrinology and Metabolism · doi:10.1016/j.tem.2019.08.013 · Cited by 169 · see citing works
Zhang, H.-Y., Tian, J., Lian, F., Li, M., Liu, W., Zhong, Z., Liao, J., & Tong, X. (2020) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2020.110857 · Cited by 163 · see citing works
Liu, H., Shiver, A. L., Price, M. N., Carlson, H. K., Trotter, V. V., Chen, Y., Escalante, V., Ray, J., Hern, K. E., Petzold, C. J., et al. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.108789 · Cited by 161 · see citing works
Deconstructing Mechanisms of Diet-Microbiome-Immune Interactions
Alexander, M., & Turnbaugh, P. J. (2020) · Immunity · doi:10.1016/j.immuni.2020.07.015 · Cited by 150 · see citing works
Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes
Russell, B. J., Brown, S. D., Siguenza, N., Mai, I., Saran, A. R., Lingaraju, A., Maissy, E. S., Dantas Machado, A. C., Pinto, A. F. M., Sanchez, C., et al. (2022) · Cell · doi:10.1016/j.cell.2022.06.050 · Cited by 151 · see citing works
Bariatric surgery reveals a gut-restricted TGR5 agonist with anti-diabetic effects
Chaudhari, S. N., Harris, D. A., Aliakbarian, H., Luo, J. N., Henke, M. T., Subramaniam, R., Vernon, A. H., Tavakkoli, A., Sheu, E. G., & Devlin, A. S. (2020) · Nature Chemical Biology · doi:10.1038/s41589-020-0604-z · Cited by 149 · see citing works
Bile Salt Hydrolases: At the Crossroads of Microbiota and Human Health
Bourgin, M., Kriaa, A., Mkaouar, H., Mariaule, V., Jablaoui, A., Maguin, E., & Rhimi, M. (2021) · Microorganisms · doi:10.3390/microorganisms9061122 · Cited by 147 · see citing works
A microbial metabolite remodels the gut-liver axis following bariatric surgery
Chaudhari, S. N., Luo, J. N., Harris, D. A., Aliakbarian, H., Yao, L., Paik, D., Subramaniam, R., Adhikari, A. A., Vernon, A. H., Kılıç, A., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2020.12.004 · Cited by 139 · see citing works
Jia, B., Park, D., Hahn, Y., & Jeon, C. O. (2020) · Gut Microbes · doi:10.1080/19490976.2020.1748261 · Cited by 135 · see citing works
Yan, Y., Yu, L., Qu, Y., Fan, Z., Zhang, T., Xu, Y., Du, Q., Brügger, D., Chen, Y., Zhang, K., et al. (2023) · npj Biofilms and Microbiomes · doi:10.1038/s41522-023-00420-5 · Cited by 128 · see citing works
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
Zuffa, S., Schmid, R., Bauermeister, A., Gomes, P. W. P., Caraballo‐Rodríguez, A. M., Abiead, Y. E., Aron, A. T., Gentry, E. C., Zemlin, J., Meehan, M. J., et al. (2024) · Nature Microbiology · doi:10.1038/s41564-023-01575-9 · Cited by 125 · see citing works
Ding, Y., Yanagi, K., Cheng, C., Alaniz, R. C., Lee, K., & Jayaraman, A. (2019) · Pharmacological Research · doi:10.1016/j.phrs.2019.01.029 · Cited by 122 · see citing works
The path toward using microbial metabolites as therapies
Descamps, H. C., Herrmann, B. I., Wiredu, D., & Thaiss, C. A. (2019) · EBioMedicine · doi:10.1016/j.ebiom.2019.05.063 · Cited by 121 · see citing works
Bile salt hydrolase in non-enterotoxigenic Bacteroides potentiates colorectal cancer
Sun, L., Zhang, Y., Cai, J., Rimal, B., Rocha, E. R., Coleman, J. P., Zhang, C., Nichols, R. G., Luo, Y., Kim, B., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-36089-9 · Cited by 122 · see citing works
Deciphering diet-gut microbiota-host interplay: Investigations of pectin
Tan, H., & Nie, S. (2020) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2020.10.010 · Cited by 119 · see citing works
Genetic circuit design automation for the gut resident species Bacteroides thetaiotaomicron
Taketani, M., Zhang, J., Zhang, S., Triassi, A. J., Huang, Y.-J., Griffith, L. G., & Voigt, C. A. (2020) · Nature Biotechnology · doi:10.1038/s41587-020-0468-5 · Cited by 118 · see citing works
Development of a covalent inhibitor of gut bacterial bile salt hydrolases
Adhikari, A. A., Seegar, T. C. M., Ficarro, S. B., McCurry, M. D., Ramachandran, D., Yao, L., Chaudhari, S. N., Ndousse-Fetter, S., Banks, A. S., Marto, J. A., et al. (2020) · Nature Chemical Biology · doi:10.1038/s41589-020-0467-3 · Cited by 116 · see citing works
Bile acid metabolism and circadian rhythms
Yang, Y., & Zhang, J. (2020) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00152.2020 · Cited by 114 · see citing works
Microbial Hydroxysteroid Dehydrogenases: From Alpha to Omega
Doden, H. L., & Ridlon, J. M. (2021) · Microorganisms · doi:10.3390/microorganisms9030469 · Cited by 110 · see citing works
Bogatyrev, S. R., Rolando, J. C., & Ismagilov, R. F. (2020) · Microbiome · doi:10.1186/s40168-020-0785-4 · Cited by 109 · see citing works
Restructuring the Gut Microbiota by Intermittent Fasting Lowers Blood Pressure
Shi, H., Zhang, B., Abo‐Hamzy, T., Nelson, J. W., Ambati, C. S. R., Petrosino, J. F., Bryan, R. M., & Durgan, D. J. (2021) · Circulation Research · doi:10.1161/circresaha.120.318155 · Cited by 112 · see citing works
Avuthu, N., & Guda, C. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.00013-22 · Cited by 112 · see citing works
The Microbiota and the Gut–Brain Axis in Controlling Food Intake and Energy Homeostasis
Romaní‐Pérez, M., Bullich‐Vilarrubias, C., López‐Almela, I., Liébana-García, R., Olivares, M., & Sanz, Y. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22115830 · Cited by 113 · see citing works
Mangalea, M. R., Páez-Espino, D., Kieft, K., Chatterjee, A., Chriswell, M. E., Seifert, J. A., Feser, M. L., Demoruelle, M. K., Sakatos, A., Anantharaman, K., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.03.020 · Cited by 98 · see citing works
Intersection of Polycystic Ovary Syndrome and the Gut Microbiome
Rizk, M. G., & Thackray, V. G. (2021) · Journal of the Endocrine Society · doi:10.1210/jendso/bvaa177 · Cited by 104 · see citing works
Physiological Role of Bile Acids Modified by the Gut Microbiome
Kiriyama, Y., & Nochi, H. (2021) · Microorganisms · doi:10.3390/microorganisms10010068 · Cited by 101 · see citing works
Gut microbiota-derived metabolites in CRC progression and causation
Dalal, N., Jalandra, R., Bayal, N., Yadav, A. K., Harshulika, Sharma, M., Makharia, G. K., Kumar, P., Singh, R. K., Solanki, P. R., et al. (2021) · Journal of Cancer Research and Clinical Oncology · doi:10.1007/s00432-021-03729-w · Cited by 102 · see citing works
Wang, F., Zhao, C., Tian, G., Wei, X., Ma, Z., Cui, J., Wei, R., Bao, Y., Kong, W., & Zheng, J. (2020) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.0c05800 · Cited by 97 · see citing works
Yun, C., Yan, S., Liao, B., Ding, Y., Qi, X., Zhao, M., Wang, K., Zhuo, Y., Nie, Q., Ye, C., et al. (2024) · Nature Metabolism · doi:10.1038/s42255-024-01041-8 · Cited by 103 · see citing works
Aw, W. C., Towarnicki, S. G., Melvin, R. G., Youngson, N. A., Garvin, M. R., Hu, Y., Nielsen, S., Thomas, T., Pickford, R., Bustamante, S., et al. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007735 · Cited by 95 · see citing works
Chemoproteomic Profiling of Gut Microbiota-Associated Bile Salt Hydrolase Activity
Parasar, B., Zhou, H., Xiao, X., Shi, Q., Brito, I., & Chang, P. V. (2019) · ACS Central Science · doi:10.1021/acscentsci.9b00147 · Cited by 95 · see citing works
Diet-gut microbiota interactions on cardiovascular disease
Zhang, X., & Gérard, P. (2022) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2022.03.028 · Cited by 94 · see citing works
A biosynthetic pathway for the selective sulfonation of steroidal metabolites by human gut bacteria
Yao, L., D’Agostino, G. D., Park, J., Hang, S., Adhikari, A. A., Zhang, Y., Li, W., Ávila-Pacheco, J., Bae, S., Clish, C. B., et al. (2022) · Nature Microbiology · doi:10.1038/s41564-022-01176-y · Cited by 94 · see citing works
Busnelli, M., Manzini, S., & Chiesa, G. (2019) · Nutrients · doi:10.3390/nu12010079 · Cited by 91 · see citing works
Agolino, G., Pino, A., Vaccalluzzo, A., Cristofolini, M., Solieri, L., Caggia, C., & Randazzo, C. L. (2024) · Journal of Functional Foods · doi:10.1016/j.jff.2024.106357 · Cited by 87 · see citing works
Pathak, P., Helsley, R. N., Brown, A. L., Buffa, J. A., Choucair, I., Nemet, I., Baleanu‐Gogonea, C., Gogonea, V., Wang, Z., Garcı́a-Garcı́a, J. C., et al. (2020) · American Journal of Physiology-Heart and Circulatory Physiology · doi:10.1152/ajpheart.00584.2019 · Cited by 88 · see citing works
Immunology of bile acids regulated receptors
Fiorucci, S., Marchianò, S., Urbani, G., Giorgio, C. D., Distrutti, E., Zampella, A., & Biagioli, M. (2024) · Progress in Lipid Research · doi:10.1016/j.plipres.2024.101291 · Cited by 84 · see citing works
Host metabolism balances microbial regulation of bile acid signalling
Won, T. H., Arifuzzaman, M., Parkhurst, C. N., Miranda, I. C., Zhang, B., Hu, E., Kashyap, S., Letourneau, J., Jin, W., Fu, Y., et al. (2025) · Nature · doi:10.1038/s41586-024-08379-9 · Cited by 94 · see citing works
Microbiota in Gut‐Heart Axis: Metabolites and Mechanisms in Cardiovascular Disease
Kondapalli, N. B., Katari, V., Dalal, K. K., Paruchuri, S. M., & Thodeti, C. K. (2025) · Comprehensive physiology · doi:10.1002/cph4.70024 · Cited by 93 · see citing works
Messengers From the Gut: Gut Microbiota-Derived Metabolites on Host Regulation
Li, C., Liang, Y., & Qiao, Y. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.863407 · Cited by 86 · see citing works
Chains of evidence from correlations to causal molecules in microbiome-linked diseases
Chaudhari, S. N., McCurry, M. D., & Devlin, A. S. (2021) · Nature Chemical Biology · doi:10.1038/s41589-021-00861-z · Cited by 80 · see citing works
Tudela, H., Claus, S. P., & Saleh, M. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.719072 · Cited by 77 · see citing works
CRISPR/Cas-Based Genome Editing for Human Gut Commensal Bacteroides Species
Zheng, L., Tan, Y., Hu, Y., Shen, J., Qu, Z., Chen, X., Ho, C. L., Leung, E. L., Zhao, W., & Dai, L. (2022) · ACS Synthetic Biology · doi:10.1021/acssynbio.1c00543 · Cited by 78 · see citing works
Proal, A. D., & Marshall, T. G. (2018) · Frontiers in Pediatrics · doi:10.3389/fped.2018.00373 · Cited by 77 · see citing works
Rekdal, V. M., Bernardino, P. N., Luescher, M. U., Kiamehr, S., Le, C.-D., Bisanz, J. E., Turnbaugh, P. J., Bess, E. N., & Balskus, E. P. (2020) · eLife · doi:10.7554/elife.50845 · Cited by 78 · see citing works
Campbell, D. E., Ly, L. K., Ridlon, J. M., Hsiao, A., Whitaker, R. J., & Degnan, P. H. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.108142 · Cited by 76 · see citing works
Bile Acid Signaling in Metabolic and Inflammatory Diseases and Drug Development
Li, T., & Chiang, J. Y. L. (2024) · Pharmacological Reviews · doi:10.1124/pharmrev.124.000978 · Cited by 83 · see citing works
Convergent evolution of bacterial ceramide synthesis
Stankeviciute, G., Tang, P., Ashley, B., Chamberlain, J. D., Hansen, M. E. B., Coleman, A., D’Emilia, R., Fu, L., Mohan, E. C., Nguyen, H. X., et al. (2021) · Nature Chemical Biology · doi:10.1038/s41589-021-00948-7 · Cited by 76 · see citing works
Keller, L. J., Babin, B. M., Lakemeyer, M., & Bogyo, M. S. (2019) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2019.10.007 · Cited by 70 · see citing works
Ning, K., Lu, K., Chen, Q., Guo, Z., Du, X., Riaz, F., Feng, L., Fu, Y., Yin, C., Zhang, F., et al. (2020) · ACS Omega · doi:10.1021/acsomega.0c01689 · Cited by 70 · see citing works
Ranaivo, H., Thirion, F., Béra‐Maillet, C., Guilly, S., Simon, C., Sothier, M., Berghe, L. V. D., Feugier, N., Lambert-Porcheron, S., Dussous, I., et al. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2044722 · Cited by 69 · see citing works
The N-space Episenome unifies cellular information space-time within cognition-based evolution
Miller, W. B., Torday, J. S., & Baluška, F. (2019) · Progress in Biophysics and Molecular Biology · doi:10.1016/j.pbiomolbio.2019.08.006 · Cited by 69 · see citing works
Bile Acid and Cholesterol Metabolism in Atherosclerotic Cardiovascular Disease and Therapy
Chiang, J. Y. L., Ferrell, J. M., Wu, Y., & Boehme, S. (2020) · Cardiology Plus · doi:10.4103/2470-7511.305419 · Cited by 61 · see citing works
Lindner, S., Miltiadous, O., Ramos, R. J. J. F., Paredes, J., Kousa, A. I., Dai, A., Fei, T., Lauder, E., Frame, J., Waters, N. R., et al. (2024) · Nature Microbiology · doi:10.1038/s41564-024-01617-w · Cited by 68 · see citing works
Bile Salt Hydrolase-Competent Probiotics in the Management of IBD: Unlocking the “Bile Acid Code”
Gadaleta, R. M., Cariello, M., Crudele, L., & Moschetta, A. (2022) · Nutrients · doi:10.3390/nu14153212 · Cited by 67 · see citing works
Hayashi, N., Lai, Y., Fuerte-Stone, J., Mimee, M., & Lu, T. K. (2024) · Nature Communications · doi:10.1038/s41467-024-45893-w · Cited by 65 · see citing works
New insights into microbial bile salt hydrolases: from physiological roles to potential applications
Dong, Z., Yang, S., Tang, C., Li, D., Kan, Y., & Yao, L. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1513541 · Cited by 64 · see citing works
Self-citationPathogen Colonization Resistance in the Gut and Its Manipulation for Improved Health
Pickard, J. M., & Núñez, G. (2019) · American Journal Of Pathology · doi:10.1016/j.ajpath.2019.03.003 · Cited by 64 · see citing works
Zhang, H., Xie, Y., Cao, F., & Song, X. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2382336 · Cited by 68 · see citing works
Bile acid analogues are activators of pyrin inflammasome
Alimov, I., Menon, S., Cochran, N., Maher, R., Wang, Q., Alford, J., Concannon, J. B., Yang, Z., Harrington, E., Llamas, L., et al. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra118.005103 · Cited by 64 · see citing works
Gut microbiome and metabolites, the future direction of diagnosis and treatment of atherosclerosis?
Cao, H., Zhu, Y., Hu, G., Zhang, Q., & Zheng, L. (2022) · Pharmacological Research · doi:10.1016/j.phrs.2022.106586 · Cited by 63 · see citing works
Role of Bile Acids in Dysbiosis and Treatment of Nonalcoholic Fatty Liver Disease
Wang, C., Zhu, C., Shao, L., Ye, J., Shen, Y., & Ren, Y. (2019) · Mediators of Inflammation · doi:10.1155/2019/7659509 · Cited by 64 · see citing works
Genetic Engineering of Resident Bacteria in the Gut Microbiome
Arnold, J. H., Glazier, J., & Mimee, M. (2023) · Journal of Bacteriology · doi:10.1128/jb.00127-23 · Cited by 62 · see citing works
Balance between bile acid conjugation and hydrolysis activity can alter outcomes of gut inflammation
Fu, Y., Guzior, D. V., Okros, M., Bridges, C., Rosset, S. L., Gonzalez, C. T., Christian Martin, H., Karunarathne, H., Watson, V. E., & Quinn, R. A. (2025) · Nature Communications · doi:10.1038/s41467-025-58649-x · Cited by 65 · see citing works
Zhou, C., Wang, Y., Li, C., Xie, Z., & Dai, L. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.03330-22 · Cited by 60 · see citing works
The gut microbiota-bile acid axis: a crucial regulator of immune function and metabolic health
Tyagi, A., & Kumar, V. (2025) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-025-04395-7 · Cited by 60 · see citing works
Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut
Kim, K. H., Park, D., Jia, B., Baek, J. H., Hahn, Y., & Jeon, C. O. (2022) · mSystems · doi:10.1128/msystems.00455-22 · Cited by 60 · see citing works
Zhao, M., Jiafeng, Z., Yang, H., Ouyang, Z., Lv, C., Geng, Z., & Zhao, J. (2025) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2025.118182 · Cited by 62 · see citing works
Li, D. K., Chaudhari, S. N., Sojoodi, M., Lee, Y., Adhikari, A. A., Zukerberg, L. R., Shroff, S. G., Barrett, S. C., Tanabe, K. K., Chung, R. T., et al. (2022) · Science Advances · doi:10.1126/sciadv.abo2794 · Cited by 59 · see citing works
Li, X., Zhao, W., Meng, X., Yu, L., Chen, Q., Hu, X., Zhao, Y., Xiong, L., Chen, X., Wang, X., et al. (2022) · Journal of Ethnopharmacology · doi:10.1016/j.jep.2022.115333 · Cited by 58 · see citing works
Integrating the gut microbiome and pharmacology
Verdegaal, A. A., & Goodman, A. L. (2024) · Science Translational Medicine · doi:10.1126/scitranslmed.adg8357 · Cited by 61 · see citing works
- Authors
- Yao, L., Seaton, S. C., Ndousse-Fetter, S., Adhikari, A. A., DiBenedetto, N., Mina, A. I., Banks, A. S., Bry, L., & Devlin, A. S.
- Affiliations
- Harvard University (US)
- Brigham and Women's Hospital (US)
- Corresponding author
- Devlin, A Sloan
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2018-07-17
- Volume
- 7
- ISSN
- 2050-084X (ISSN-L)
- PMC
- PMC6078496
- OpenAlex
- W2884910880
- Cited by
- 274
- References
- 90
- Citations by year
- 2026: 28 · 2025: 33 · 2024: 41 · 2023: 28 · 2022: 45 · 2021: 41 · 2020: 32 · 2019: 23 · 2018: 3
- FWCI
- 8.81
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- eLife (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Institutes of Health (P30DK034854)
- Wellington Postdoctoral Fellowship
- Massachusetts Institute of Technology (Center for Microbiome Informatics and Therapeutics – Innovation Award)
- Karin Grunebaum Cancer Research Foundation (Junior Faculty Award)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Oncology › Drug Transport and Resistance Mechanisms
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Keywords
- bile salt hydrolase, Bacteroides thetaiotaomicron, gut microbiota, host metabolism, bile acids, obesity, metabolic syndrome, gnotobiotic mice, respiratory exchange ratio, circadian rhythm, immune gene expression, microbial metabolites
- MeSH terms
- Bacteroides thetaiotaomicron, Host Microbial Interactions, Amidohydrolases, Animals, Body Weight, Circadian Rhythm, Germ-Free Life, Immunity, Intestines, Liver, Metabolism, Respiration, Taurocholic Acid, Gene Expression Profiling, Gastrointestinal Tract, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review