Check biochemistry, genetics and molecular biology papers: citations, claims and retractions

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization

Ahdritz, G., Bouatta, N., Floristean, C., Kadyan, S., Xia, Q., Gerecke, W., O’Donnell, T. J., Berenberg, D., Fisk, I., Zanichelli, N., et al. (2024) · Nature Methods

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 439

Interactions, localization, and phosphorylation of the m6A generating METTL3–METTL14–WTAP complex

Schöller, E., Weichmann, F., Treiber, T., Ringle, S., Treiber, N., Flatley, A., Feederle, R., Bruckmann, A., & Meister, G. (2018) · RNA

RNA modifications and cancerCancer-related gene regulation

Cited by 439

Gene duplication and the adaptive evolution of a classic genetic switch

Hittinger, C. T., & Carroll, S. B. (2007) · Nature

Fungal and yeast genetics researchEvolution and Genetic Dynamics

Cited by 439

Targeting the PI3K/AKT/mTOR pathway in triple-negative breast cancer: a review

Costa, R. L. B., Han, H. S., & Gradishar, W. J. (2018) · Breast Cancer Research and Treatment

PI3K/AKT/mTOR signaling in cancerAdvanced Breast Cancer Therapies

Cited by 439

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

Matsumoto, H., Kiryu, H., Furusawa, C., Ko, M. S. H., Ko, S. B. H., Gouda, N., Hayashi, T., & Nikaido, I. (2017) · Bioinformatics

Gene Regulatory Network AnalysisSingle-cell and spatial transcriptomics

Cited by 439

Yeast Rtt109 Promotes Genome Stability by Acetylating Histone H3 on Lysine 56

Driscoll, R., Hudson, A., & Jackson, S. P. (2007) · Science

Genomics and Chromatin DynamicsDNA Repair Mechanisms

Cited by 439

SIRT1 regulates the histone methyl-transferase SUV39H1 during heterochromatin formation.

Vaquero, A., Scher, M., Erdjument-Bromage, H., Tempst, P., Serrano, L., & Reinberg, D. (2007) · Nature

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 439

A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis

Kroth, P. G., Chiovitti, A., Gruber, A., Martin-Jezequel, V., Mock, T., Parker, M. S., Stanley, M. S., Kaplan, A., Caron, L., Weber, T., et al. (2008) · PLoS ONE

Photosynthetic Processes and MechanismsProtist diversity and phylogeny

Cited by 439

Elucidating the folding problem of α-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters 1 1Edited by A. R. Fersht

Lacroix, E., Viguera, A. R., & Serrano, L. (1998) · Journal of Molecular Biology

Protein Structure and DynamicsChemical Synthesis and Analysis

Cited by 439

Mechanisms generating cancer genome complexity from a single cell division error

Umbreit, N. T., Zhang, C.-Z., Lynch, L. D., Blaine, L. J., Cheng, A. M., Tourdot, R., Sun, L., Almubarak, H. F., Judge, K., Mitchell, T. J., et al. (2020) · Science

Genomic variations and chromosomal abnormalitiesDNA Repair Mechanisms

Cited by 439

The comings and goings of nucleotide excision repair factors on damaged DNA

Riedl, T., Hanaoka, F., & Egly, J. (2003) · The EMBO Journal

DNA Repair MechanismsNuclear Structure and Function

Cited by 439

Maternal prenatal stress is associated with the infant intestinal microbiota

Zijlmans, M. A. C., Korpela, K., Riksen-Walraven, J. M., de Vos, W. M., & de Weerth, C. (2015) · Psychoneuroendocrinology

Gut microbiota and healthInfant Nutrition and Health

Cited by 438

Recent human effective population size estimated from linkage disequilibrium

Tenesa, A., Navarro, P., Hayes, B. J., Duffy, D. L., Clarke, G. M., Goddard, M. E., & Visscher, P. M. (2007) · Genome Research

Forensic and Genetic ResearchGenetic diversity and population structure

Cited by 438

Mitochondrial respiratory complex I: Structure, function and implication in human diseases

Sharma, L., Lu, J., & Bai, Y. (2009) · Current Medicinal Chemistry

Mitochondrial Function and PathologyEnzyme Structure and Function

Cited by 438

NF-κB RelA Phosphorylation Regulates RelA Acetylation

Chen, L.-F., Williams, S. A., Mu, Y., Nakano, H., Duerr, J. M., Buckbinder, L., & Greene, W. C. (2005) · Molecular and Cellular Biology

NF-κB Signaling PathwaysGenomics and Chromatin Dynamics

Cited by 438

Detecting Activated Cell Populations Using Single-Cell RNA-Seq

Wu, Y. E., Pan, L., Zuo, Y., Li, X., & Hong, W. (2017) · Neuron

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 438

Control of the replicative life span of human fibroblasts by p16 and the polycomb protein Bmi-1

Itahana, K., Zou, Y., Itahana, Y., Martinez, J.-L., Beausejour, C., Jacobs, J. J. L., van Lohuizen, M., Band, V., Campisi, J., & Dimri, G. P. (2003) · Molecular and Cellular Biology

Telomeres, Telomerase, and SenescenceGenetics, Aging, and Longevity in Model Organisms

Cited by 438

A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell

Choi, P. J., Cai, L., Frieda, K., & Xie, X. S. (2008) · Science

Bacterial Genetics and BiotechnologyGene Regulatory Network Analysis

Cited by 438

Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology

Rossin, E. J., Lage, K., Raychaudhuri, S., Xavier, R. J., Tatar, D., Benita, Y., Constortium, I. I. B. D. G., Cotsapas, C., & Daly, M. J. (2011) · PLoS Genetics

Bioinformatics and Genomic NetworksGenetic Associations and Epidemiology

Cited by 438

Innate and Induced Resistance Mechanisms of Bacterial Biofilms

Anderson, G. G., & O'Toole, G. A. (2008) · Current Topics in Microbiology and Immunology

Bacterial biofilms and quorum sensingBacterial Genetics and Biotechnology

Cited by 438

The Absence of Mitochondrial Thioredoxin 2 Causes Massive Apoptosis, Exencephaly, and Early Embryonic Lethality in Homozygous Mice

Nonn, L., Williams, R. R., Erickson, R. P., & Powis, G. (2003) · Molecular and Cellular Biology

Redox biology and oxidative stressCell death mechanisms and regulation

Cited by 438

Structure, function, and post–translational regulation of the catalytic and modifier subunits of glutamate cysteine ligase

Franklin, C. C., Backos, D. S., Mohar, I., White, C. C., Forman, H. J., & Kavanagh, T. J. (2009) · Molecular Aspects of Medicine

Sulfur Compounds in BiologyGlutathione Transferases and Polymorphisms

Cited by 438

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

Zdobnov, E. M., Tegenfeldt, F., Kuznetsov, D., Waterhouse, R. M., Simão, F. A., Ioannidis, P., Seppey, M., Loetscher, A., & Kriventseva, E. V. (2017) · Nucleic Acids Research

Genomics and Phylogenetic StudiesBioinformatics and Genomic Networks

Cited by 438

Biological effects from electromagnetic field exposure and public exposure standards

Hardell, L., & Sage, C. (2008) · Biomedicine & Pharmacotherapy

Electromagnetic Fields and Biological EffectsMagnetic and Electromagnetic Effects

Cited by 438