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Transcriptomic response of Gordonia sp. strain NB4-1Y when provided with 6: 2 fluorotelomer sulfonamidoalkyl betaine or 6: 2 fluorotelomer sulfonate as sole sulfur source

Bottos, Eric M., AL-shabib, Ebtihal Y., Shaw, Dayton M. J., McAmmond, Breanne M., Sharma, Aditi, Suchan, Danae M., Cameron, Andrew D. S., Van Hamme, Jonathan D.·2020·Biodegradation
DOI 10.1007/s10532-020-09917-8PMC PMC7661421
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Abstract

Perfluoroalkyl and polyfluoroalkyl substances (PFAS) are environmental contaminants of concern. We previously described biodegradation of two PFAS that represent components and transformation products of aqueous film-forming foams (AFFF), 6:2 fluorotelomer sulfonamidoalkyl betaine (6:2 FTAB) and 6:2 fluorotelomer sulfonate (6:2 FTSA), by Gordonia sp. strain NB4-1Y. To identify genes involved in the breakdown of these compounds, the transcriptomic response of NB4-1Y was examined when grown on 6:2 FTAB, 6:2 FTSA, a non-fluorinated analog of 6:2 FTSA (1-octanesulfonate), or MgSO 4 , as sole sulfur source. Differentially expressed genes were identified as those with ± 1.5 log 2 -fold-differences (± 1.5 log 2 FD) in transcript abundances in pairwise comparisons. Transcriptomes of cells grown on 6:2 FTAB and 6:2 FTSA were most similar (7.9% of genes expressed ± 1.5 log 2 FD); however, several genes that were expressed in greater abundance in 6:2 FTAB treated cells compared to 6:2 FTSA treated cells were noted for their potential role in carbon–nitrogen bond cleavage in 6:2 FTAB. Responses to sulfur limitation were observed in 6:2 FTAB, 6:2 FTSA, and 1-octanesulfonate treatments, as 20 genes relating to global sulfate stress response were more highly expressed under these conditions compared to the MgSO 4 treatment. More highly expressed oxygenase genes in 6:2 FTAB, 6:2 FTSA, and 1-octanesulfonate treatments were found to code for proteins with lower percent sulfur-containing amino acids compared to both the total proteome and to oxygenases showing decreased expression. This work identifies genetic targets for further characterization and will inform studies aimed at evaluating the biodegradation potential of environmental samples through applied genomics. Graphic Abstract:

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Metadata

Authors
Bottos, E. M., AL-shabib, E. Y., Shaw, D. M. J., McAmmond, B. M., Sharma, A., Suchan, D. M., Cameron, A. D. S., & Van Hamme, J. D.
ORCID
Venue
Biodegradation
Publisher
Springer Science and Business Media LLC
Published
2020-11-05
Volume
31
Issue
4-6
Pages
407-422
ISSN
  • 0923-9820
  • 1572-9729
DOI
10.1007/s10532-020-09917-8
PMC
PMC7661421
Cited by
23
References
13
Language
en
Licence
Funders
  • Natural Sciences and Engineering Research Council of Canada (RGPIN-435784-2013)
  • Canada Foundation for Innovation
  • University of Regina

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