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Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae
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Obesity alters gut microbial ecology
Ley, R. E., Bäckhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., & Gordon, J. I. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0504978102 · Cited by 6,176
An Immunomodulatory Molecule of Symbiotic Bacteria Directs Maturation of the Host Immune System
Mazmanian, S. K., Liu, C. H., Tzianabos, A. O., & Kasper, D. L. (2005) · Cell · doi:10.1016/j.cell.2005.05.007 · Cited by 2,910
Research works printed but not linked: 46
- Aebischer, 2006, Vaccination prevents Helicobacter pylori-induced alterations of the gastric flora in mice, FEMS Immunol. Med. Microbiol., 46, 221, 10.1111/rp10.1016-j.femsim.2004.05.008 · DOI
- Alakomi, 2000, Lactic acid permeabelizes gram negative bacteria by disrupting the outer membrane, Appl Environ. Microbiol., 66, 2001, 10.1128/AEM.66.5.2001-2005.2000 · DOI · Paper page
- Amann, 1990, Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations, Appl. Environ. Microbiol., 56, 1919, 10.1128/aem.56.6.1919-1925.1990 · DOI · Paper page
- Andoh, 2007, Terminal restriction fragment length polymorphism analysis of the diversity of fecal microbiota in patients with ulcerative colitis, Inflamm. Bowel Dis., 13, 955, 10.1002/ibd.20151 · DOI · Paper page
- Audic, 1997, The significance of digital gene expression profiles, Genome Res., 7, 986, 10.1101/gr.7.10.986 · DOI
- Christensen, 2002, Lactobacilli differentially modulate expression of cytokines and maturation surface markers in murine dendritic cells, J. Immunol., 168, 171, 10.4049/jimmunol.168.1.171 · DOI · Paper page
- Coker, 2002, Human campylobacteriosis in developing countries, Emerg. Infect. Dis., 8, 237, 10.3201/eid0803.010233 · DOI · Paper page
- Cole, 2005, The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis, Nucleic Acids Res., 1, D294
- Eckburg, 2005, Diversity of the human intestinal microbial flora, Science, 308, 1635, 10.1126/science.1110591 · DOI · Paper page
- Gibson, 1995, Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics, J. Nutr., 125, 1401, 10.1093/jn/125.6.1401 · DOI · Paper page
- Gobert, 2004, Protective role of arginase in a mouse model of colitis, J. Immunol., 173, 2109, 10.4049/jimmunol.173.3.2109 · DOI
- Gomes, 2006, Comparison of antagonistic ability against enteropathogens by G+ and G- anaerobic dominant components of human fecal microbiota, Folia Microbiol. (Praha), 51, 141, 10.1007/BF02932170 · DOI
- Gophna, 2006, Differences between tissue-associated intestinal microfloras of patients with Crohn's disease and ulcerative colitis, J. Clin. Microbiol., 44, 4136, 10.1128/JCM.01004-06 · DOI · Paper page
- Higgins, 1999, Citrobacter rodentium infection in mice elicits a mucosal Th1 cytokine response and lesions similar to those in murine inflammatory bowel disease, Infect. Immun., 67, 3031, 10.1128/IAI.67.6.3031-3039.1999 · DOI · Paper page
- Hooper, 2002, How host-microbial interactions shape the nutrient environment of the mammalian intestine, Annu. Rev. Nutr., 22, 283, 10.1146/annurev.nutr.22.011602.092259 · DOI · Paper page
- Imaoka, 1996, Proliferative recruitment of intestinal intraepithelial lymphocytes after microbial colonization of germ-free mice, Eur. J. Immunol., 26, 945, 10.1002/eji.1830260434 · DOI
- Kitajima, 1999, Changes in colonic mucosal permeability in mouse colitis induced with dextran sulfate sodium, Exp. Anim., 48, 137, 10.1538/expanim.48.137 · DOI · Paper page
- Korlath, 1985, A point-source outbreak of campylobacteriosis associated with consumption of raw milk, J. Infect. Dis., 152, 592, 10.1093/infdis/152.3.592 · DOI · Paper page
- Kuehl, 2005, Colonization of the cecal mucosa by Helicobacter hepaticus impacts the diversity of the indigenous microbiota, Infect. Immun., 73, 6952, 10.1128/IAI.73.10.6852-6961.2005 · DOI
- Kuhn, 1993, Interleukin-10-deficient mice develop chronic enterocolitis, Cell, 75, 263, 10.1016/0092-8674(93)80068-P · DOI · Paper page
- Luperchio, 2001, Molecular pathogenesis of Citrobacter rodentium and transmissible murine colonic hyperplasia, Microbes Infect., 3, 333, 10.1016/S1286-4579(01)01387-9 · DOI · Paper page
- Mansfield, 2007, C57BL/6 and congenic interleukin-10-deficient mice can serve as models of Campylobacter jejuni colonization and enteritis, Infect. Immun., 75, 1099, 10.1128/IAI.00833-06 · DOI
- Manz, 1992, Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: Problems and solutions, Syst. Appl. Microbiol., 15, 593, 10.1016/S0723-2020(11)80121-9 · DOI · Paper page
- Martinez-Medina, 2006, Abnormal microbiota composition in the ileocolonic mucosa of Crohn's disease patients as revealed by polymerase chain reaction-denaturing gradient gel electrophoresis, Inflamm. Bowel Dis., 12, 1136, 10.1097/01.mib.0000235828.09305.0c · DOI · Paper page
- Mueller, 2006, Layers of mutualism with commensal bacteria protect us from intestinal inflammation, Gut, 55, 276, 10.1136/gut.2004.054098 · DOI
- Nenci, 2007, Epithelial NEMO links innate immunity to chronic intestinal inflammation, Nature, 446, 557, 10.1038/nature05698 · DOI · Paper page
- Reid, 2001, Can bacterial interference prevent infection?, Trends Microbiol., 9, 424, 10.1016/S0966-842X(01)02132-1 · DOI · Paper page
- Rinella, 2006, Human epithelial-specific response to pathogenic Campylobacter jejuni, FEMS Microbiol. Lett., 262, 236, 10.1111/j.1574-6968.2006.00396.x · DOI
- Sadlack, 1993, Ulcerative colitis-like disease in mice with a disrupted interleukin-2 gene, Cell, 75, 253, 10.1016/0092-8674(93)80067-O · DOI · Paper page
- Sansonetti, 2004, War and peace at mucosal surfaces, Nat. Rev. Immunol., 4, 953, 10.1038/nri1499 · DOI · Paper page
- Sartor, 2006, Mechanisms of Disease: Pathogenesis of Crohn's disease and ulcerative colitis, Nat. Clin. Pract. Gastroenterol. Hepatol., 7, 390, 10.1038/ncpgasthep0528 · DOI · Paper page
- Sartor, 2007, Bacteria in Crohn's disease: Mechanisms of inflammation and therapeutic implications, J. Clin. Gastroenterol., 41, S37, 10.1097/MCG.0b013e31802db364 · DOI
- Schauer, 1993, Attaching and effacing locus of a Citrobacter freundii biotype that causes transmissible murine colonic hyperplasia, Infect. Immun., 61, 2486, 10.1128/iai.61.6.2486-2492.1993 · DOI · Paper page
- Servin, 2004, Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens, FEMS Microbiol. Rev., 28, 405, 10.1016/j.femsre.2004.01.003 · DOI · Paper page
- Shi, 2004, Bacterial colonization and the development of intestinal defences, Can. J. Gastroenterol., 18, 493, 10.1155/2004/690421 · DOI
- Shull, 1992, Targeted disruption of the mouse transforming growth factor-beta 1 gene results in multifocal inflammatory disease, Nature, 359, 693, 10.1038/359693a0 · DOI · Paper page
- Silva, 2001, Antagonism against Vibrio cholerae by diffusible substances produced by bacterial components of the human faecal microbiota, J. Med. Microbiol., 50, 161, 10.1099/0022-1317-50-2-161 · DOI
- Sprunt, 1988, The use of bacterial interference to prevent infection, Can. J. Microbiol., 34, 332, 10.1139/m88-061 · DOI
- Strober, 2007, The fundamental basis of inflammatory bowel disease, J. Clin. Invest., 117, 514, 10.1172/JCI30587 · DOI · Paper page
- Vallance, 2002, Modulation of inducible nitric oxide synthase expression by the attaching and effacing bacterial pathogen citrobacter rodentium in infected mice, Infect. Immun., 70, 6424, 10.1128/IAI.70.11.6424-6435.2002 · DOI
- Wallner, 1993, Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms, Cytometry, 14, 136, 10.1002/cyto.990140205 · DOI · Paper page
- Wang, 2007, High proportions of proinflammatory bacteria on the colonic mucosa in a young patient with ulcerative colitis as revealed by cloning and sequencing of 16S rRNA genes, Dig. Dis. Sci., 52, 620, 10.1007/s10620-006-9461-1 · DOI
- Whary, 2006, Rapid onset of ulcerative typhlocolitis in B6.129P2–IL10tm1Cgn (IL-10−/−) mice infected with Helicobacter trogontum is associated with decreased colonization by altered Schaedler's flora, Infect. Immun., 74, 6615, 10.1128/IAI.01091-06 · DOI
- Weller, 2000, 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides, Syst. Appl. Microbiol., 23, 107, 10.1016/S0723-2020(00)80051-X · DOI
- Wirtz, 2007, Chemically induced mouse models of intestinal inflammation, Nat. Protoc., 2, 541, 10.1038/nprot.2007.41 · DOI · Paper page
- Xu, 2003, Inaugural Article: Honor thy symbionts, Proc. Natl. Acad. Sci. USA, 100, 10452, 10.1073/pnas.1734063100 · DOI · Paper page
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Sanders, M. E. (2011) · Journal of Clinical Gastroenterology · doi:10.1097/mcg.0b013e318227414a · Cited by 153
A prospective longitudinal study on the microbiota composition in amyotrophic lateral sclerosis
Di Gioia, D., Bozzi Cionci, N., Baffoni, L., Amoruso, A., Pane, M., Mogna, L., Gaggìa, F., Lucenti, M. A., Bersano, E., Cantello, R., et al. (2020) · BMC Medicine · doi:10.1186/s12916-020-01607-9 · Cited by 151
Hoffmann, C., Hill, D. A., Minkah, N., Kirn, T., Troy, A., Artis, D., & Bushman, F. (2009) · Infection and Immunity · doi:10.1128/iai.00493-09 · Cited by 142
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Grigg, J. B., & Sonnenberg, G. F. (2017) · The Journal of Immunology · doi:10.4049/jimmunol.1601621 · Cited by 130
Yazdankhah, S., Rudi, K., & Bernhoft, A. (2014) · Microbial Ecology in Health & Disease · doi:10.3402/mehd.v25.25862 · Cited by 127
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Spiller, R., & Garsed, K. (2009) · Digestive and Liver Disease · doi:10.1016/j.dld.2009.07.007 · Cited by 122
Aguilera, M., Vergara, P., & Martínez, V. (2013) · Neurogastroenterology & Motility · doi:10.1111/nmo.12154 · Cited by 119
Duytschaever, G., Huys, G., Bekaert, M., Boulanger, L., De Boeck, K., & Vandamme, P. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.05933-11 · Cited by 114
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Verlaet, A. A. J., Noriega, D. B., Hermans, N., & Savelkoul, H. F. J. (2014) · European Child & Adolescent Psychiatry · doi:10.1007/s00787-014-0522-2 · Cited by 114
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Jacob, N., Jacobs, J. P., Kumagai, K., Ha, C. W. Y., Kanazawa, Y., Lagishetty, V., Altmayer, K., Hamill, A. M., Von Arx, A., Sartor, R. B., et al. (2018) · Mucosal Immunology · doi:10.1038/s41385-018-0055-y · Cited by 102
Marteyn, B., Scorza, F. B., Sansonetti, P. J., & Tang, C. (2011) · Cellular Microbiology · doi:10.1111/j.1462-5822.2010.01549.x · Cited by 102
Peachey, L. E., Jenkins, T. P., & Cantacessi, C. (2017) · Trends in Parasitology · doi:10.1016/j.pt.2017.04.004 · Cited by 101
He, R., Li, P., Wang, J., Cui, B., Zhang, F., & Zhao, F. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2100197 · Cited by 98
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Golofast, B., & Vales, K. (2020) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2019.12.011 · Cited by 92
Littmann, E. R., Lee, J.-J., Denny, J. E., Alam, Z., Maslanka, J. R., Zarin, I., Matsuda, R., Carter, R. A., Susac, B., Saffern, M. S., et al. (2021) · Nature Communications · doi:10.1038/s41467-020-20793-x · Cited by 88
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Keeney, K. M., & Finlay, B. B. (2011) · Current Opinion in Microbiology · doi:10.1016/j.mib.2010.12.012 · Cited by 81
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Cao, Y., Cheng, Y., Pan, W., Diao, J., Sun, L., & Meng, M. (2025) · BMC Psychiatry · doi:10.1186/s12888-025-06871-8 · Cited by 80
Charlet, R., Pruvost, Y., Tumba, G., Istel, F., Poulain, D., Kuchler, K., Sendid, B., & Jawhara, S. (2018) · Scientific Reports · doi:10.1038/s41598-018-21422-w · Cited by 74
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Ahmer, B. M. M., & Gunn, J. S. (2011) · Frontiers in Microbiology · doi:10.3389/fmicb.2011.00101 · Cited by 74
Lorente-Picón, M., & Laguna, A. (2021) · Biomolecules · doi:10.3390/biom11030433 · Cited by 69
Bailey, M. T. (2012) · Hormones and Behavior · doi:10.1016/j.yhbeh.2012.02.006 · Cited by 69
Kortman, G. A. M., Mulder, M. L. M., Richters, T. J. W., Shanmugam, N. K. N., Trebicka, E., Boekhorst, J., Timmerman, H. M., Roelofs, R., Wiegerinck, E. T., Laarakkers, C. M., et al. (2015) · European Journal of Immunology · doi:10.1002/eji.201545642 · Cited by 65
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Self-citationLee, J.-G., Lee, S., Jeon, J., Kong, H. G., Cho, H.-J., Kim, J.-H., Kim, S.-Y., Oh, M. J., Lee, D., Seo, N., et al. (2022) · Microbiome · doi:10.1186/s40168-021-01191-x · Cited by 26
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Metadata
- Authors
- Lupp, C., Robertson, M. L., Wickham, M. E., Sekirov, I., Champion, O. L., Gaynor, E. C., & Finlay, B. B.
- Venue
- Cell Host & Microbe
- Publisher
- Elsevier BV
- Published
- 2007-08
- Volume
- 2
- Issue
- 2
- Pages
- 119-129
- ISSN
- 1931-3128 (ISSN-L)
- OpenAlex
- W2048093113
- Cited by
- 1,307
- References
- 2
- FWCI
- 12.57
- Type
- journal article
- Language
- en
- Open access
- bronze
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 2177 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
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