Differences in gut microbiota in patients with vs without inflammatory bowel diseases: A systematic review

Diet rapidly and reproducibly alters the human gut microbiome

David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100 · see citing works

Inflammatory bowel disease

Abraham, C., & Cho, J. H. (2009) · New England Journal of Medicine · doi:10.1056/nejmra0804647 · Cited by 2,712 · see citing works

Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach

Manichanh, C., Rigottier-Gois, L., Bonnaud, E., Gloux, K., Pelletier, E., Frangeul, L., Nalin, R., Jarrin, C., Chardon, P., Marteau, P., et al. (2006) · Gut · doi:10.1136/gut.2005.073817 · Cited by 2,277 · see citing works

A decrease of the butyrate-producing species <i>Roseburia hominis</i> and <i>Faecalibacterium prausnitzii</i> defines dysbiosis in patients with ulcerative colitis

Machiels, K., Joossens, M., Sabino, J., De Preter, V., Arijs, I., Eeckhaut, V., Ballet, V., Claes, K., Van Immerseel, F., Verbeke, K., et al. (2014) · Gut · doi:10.1136/gutjnl-2013-304833 · Cited by 1,904 · see citing works

Mechanisms of Disease: pathogenesis of Crohn's disease and ulcerative colitis

Sartor, R. B. (2006) · Nature Clinical Practice Gastroenterology &#38 Hepatology · doi:10.1038/ncpgasthep0528 · Cited by 1,763 · see citing works

Epidemiology and risk factors for IBD

Ananthakrishnan, A. N. (2015) · Nature Reviews Gastroenterology &amp; Hepatology · doi:10.1038/nrgastro.2015.34 · Cited by 1,741 · see citing works

High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn’s disease

Darfeuille-Michaud, A., Boudeau, J., Bulois, P., Neut, C., Glasser, A.-L., Barnich, N., Bringer, M.-A., Swidsinski, A., Beaugerie, L., & Colombel, J.-F. (2004) · Gastroenterology · doi:10.1053/j.gastro.2004.04.061 · Cited by 1,566 · see citing works

Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial

Moayyedi, P., Surette, M. G., Kim, P. T., Libertucci, J., Wolfe, M., Onischi, C., Armstrong, D., Marshall, J. K., Kassam, Z., Reinisch, W., et al. (2015) · Gastroenterology · doi:10.1053/j.gastro.2015.04.001 · Cited by 1,499 · see citing works

Temperature Gradient Gel Electrophoresis Analysis of 16S rRNA from Human Fecal Samples Reveals Stable and Host-Specific Communities of Active Bacteria

Zoetendal, E. G., Akkermans, A. D. L., & de Vos, W. M. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.10.3854-3859.1998 · Cited by 1,360 · see citing works

Fungal microbiota dysbiosis in IBD

Sokol, H., Leducq, V., Aschard, H., Pham, H., Jégou, S., Landman, C., Cohen, D., Liguori, G., Bourrier, A., Nion–Larmurier, I., et al. (2016) · Gut · doi:10.1136/gutjnl-2015-310746 · Cited by 1,321 · see citing works

Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease

Ott, S. J., Musfeldt, M., Wenderoth, D. F., Hampe, J., Brant, O., Fölsch, U. R., Timmis, K. N., & Schreiber, S. (2004) · Gut · doi:10.1136/gut.2003.025403 · Cited by 1,311 · see citing works

The first 1000 cultured species of the human gastrointestinal microbiota

Rajilić-Stojanović, M., & de Vos, W. M. (2014) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12075 · Cited by 1,182 · see citing works

Dysbiosis of the faecal microbiota in patients with Crohn’s disease and their unaffected relatives

Joossens, M., Huys, G., Cnockaert, M., De Preter, V., Verbeke, K., Rutgeerts, P., Vandamme, P., & Vermeire, S. (2011) · Gut · doi:10.1136/gut.2010.223263 · Cited by 1,063 · see citing works

Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: antibiotics, probiotics, and prebiotics

Sartor, R. B. (2004) · Gastroenterology · doi:10.1053/j.gastro.2004.03.024 · Cited by 1,053 · see citing works

A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes

Willing, B. P., Dicksved, J., Halfvarson, J., Andersson, A. F., Lucio, M., Zheng, Z., Järnerot, G., Tysk, C., Jansson, J. K., & Engstrand, L. (2010) · Gastroenterology · doi:10.1053/j.gastro.2010.08.049 · Cited by 1,032 · see citing works

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases

Duboc, H., Rajca, S., Rainteau, D., Benarous, D., Maubert, M.-A., Quervain, E., Thomas, G., Barbu, V., Humbert, L., Despras, G., et al. (2013) · Gut · doi:10.1136/gutjnl-2012-302578 · Cited by 930 · see citing works

Towards standards for human fecal sample processing in metagenomic studies

Costea, P. I., Zeller, G., Sunagawa, S., Pelletier, E., Alberti, A., Levenez, F., Tramontano, M., Driessen, M., Hercog, R., Jung, F.-E., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.3960 · Cited by 893 · see citing works

Faecalibacterium prausnitzii : from microbiology to diagnostics and prognostics

López‐Siles, M., Duncan, S. H., Garcia-Gil, L. J., & Martínez-Medina, M. (2017) · The ISME Journal · doi:10.1038/ismej.2016.176 · Cited by 876 · see citing works

Mucosa-Associated Bacteria in the Human Gastrointestinal Tract Are Uniformly Distributed along the Colon and Differ from the Community Recovered from Feces

Zoetendal, E. G., von Wright, A., Vilpponen-Salmela, T., Ben-Amor, K., Akkermans, A. D. L., & de Vos, W. M. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.7.3401-3407.2002 · Cited by 868 · see citing works

Identification of an anti-inflammatory protein from Faecalibacterium prausnitzii , a commensal bacterium deficient in Crohn’s disease

Quévrain, E., Maubert, M.-A., Michon, C., Chain, F., Marquant, R., Tailhades, J., Miquel, S., Carlier, L., Bermúdez‐Humarán, L. G., Pigneur, B., et al. (2015) · Gut · doi:10.1136/gutjnl-2014-307649 · Cited by 861 · see citing works

A microbial signature for Crohn's disease

Pascal, V., Pozuelo, M., Borruel, N., Casellas, F., Campos, D., Santiago, A., Martínez, X., Varela, E., Sarrabayrouse, G., Machiels, K., et al. (2017) · Gut · doi:10.1136/gutjnl-2016-313235 · Cited by 842 · see citing works

Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

Imhann, F., Vich Vila, A., Bonder, M. J., Fu, J., Gevers, D., Visschedijk, M. C., Spekhorst, L. M., Alberts, R., Franke, L., van Dullemen, H. M., et al. (2018) · Gut · doi:10.1136/gutjnl-2016-312135 · Cited by 788 · see citing works

Gut Microbiota in Patients With Irritable Bowel Syndrome—A Systematic Review

Pittayanon, R., Lau, J. T., Yuan, Y., Leontiadis, G. I., Tse, F., Surette, M., & Moayyedi, P. (2019) · Gastroenterology · doi:10.1053/j.gastro.2019.03.049 · Cited by 719 · see citing works

Experimental and analytical tools for studying the human microbiome

Kuczynski, J., Lauber, C. L., Walters, W. A., Parfrey, L. W., Clemente, J. C., Gevers, D., & Knight, R. D. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3129 · Cited by 710 · see citing works

Vertical mother–neonate transfer of maternal gut bacteria via breastfeeding

Jost, T., Lacroix, C., Braegger, C., Rochat, F., & Chassard, C. (2013) · Environmental Microbiology · doi:10.1111/1462-2920.12238 · Cited by 577 · see citing works

Extracellular vesicles derived from gut microbiota, especially Akkermansia muciniphila, protect the progression of dextran sulfate sodium-induced colitis

Kang, C.-S., Ban, M., Choi, E.-J., Moon, H.-G., Jeon, J.-S., Kim, D.-K., Park, S.-K., Jeon, S. G., Roh, T.-Y., Myung, S.-J., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0076520 · Cited by 543 · see citing works

Adherent-invasive Escherichia coli in inflammatory bowel disease

Palmela, C., Chevarin, C., Xu, Z., Torres, J., Sevrin, G., Hirten, R. P., Barnich, N., Ng, S. C., & Colombel, J. (2017) · Gut · doi:10.1136/gutjnl-2017-314903 · Cited by 541 · see citing works

Primer and platform effects on 16S rRNA tag sequencing

Tremblay, J., Singh, K. P., Fern, A., Kirton, E., He, S., Woyke, T., Lee, J., Chen, F., Dangl, J. L., & Tringe, S. G. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00771 · Cited by 530 · see citing works

Increased Proportions of Bifidobacterium and the Lactobacillus Group and Loss of Butyrate-Producing Bacteria in Inflammatory Bowel Disease

Wang, W., Chen, L., Zhou, R., Wang, X., Song, L., Huang, S., Wang, G., & Xia, B. (2014) · Journal of Clinical Microbiology · doi:10.1128/jcm.01500-13 · Cited by 509 · see citing works

The gut microbial profile in patients with primary sclerosing cholangitis is distinct from patients with ulcerative colitis without biliary disease and healthy controls

Kummen, M., Holm, K., Anmarkrud, J. A., Nygård, S., Vesterhus, M., Høivik, M. L., Trøseid, M., Marschall, H.-U., Schrumpf, E., Moum, B., et al. (2017) · Gut · doi:10.1136/gutjnl-2015-310500 · Cited by 426 · see citing works

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

Erickson, A. R., Cantarel, B. L., Lamendella, R., Darzi, Y., Mongodin, E. F., Pan, C., Shah, M., Halfvarson, J., Tysk, C., Henrissat, B., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0049138 · Cited by 395 · see citing works

Cross sectional evaluation of the gut-microbiome metabolome axis in an Italian cohort of IBD patients

Santoru, M. L., Piras, C., Murgia, A., Palmas, V., Camboni, T., Liggi, S., Ibba, I., Lai, M. A., Orrù, S., Blois, S., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-10034-5 · Cited by 387 · see citing works

Distinct gut microbiota profiles in patients with primary sclerosing cholangitis and ulcerative colitis

Bajer, L., Kverka, M., Kostovčík, M., Mačinga, P., Dvořák, J., Stehlíková, Z., Březina, J., Wohl, P., Špičák, J., & Drastich, P. (2017) · World Journal of Gastroenterology · doi:10.3748/wjg.v23.i25.4548 · Cited by 360 · see citing works

Phylogenetic Analysis of Dysbiosis in Ulcerative Colitis During Remission

Rajilić-Stojanović, M. D., Shanahan, F., Guarner, F., & de Vos, W. M. (2013) · Inflammatory Bowel Diseases · doi:10.1097/mib.0b013e31827fec6d · Cited by 355 · see citing works

Fungal Dysbiosis in Mucosa-associated Microbiota of Crohn’s Disease Patients

Liguori, G., Lamas, B., Richard, M. L., Brandi, G., Costa, G. D., Hoffmann, T. W., Simone, M. P. D., Calabrese, C., Poggioli, G., Langella, P., et al. (2015) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjv209 · Cited by 332 · see citing works

Decreased abundance of <i> <scp>F</scp> aecalibacterium prausnitzii </i> in the gut microbiota of <scp>C</scp> rohn's disease

Fujimoto, T., Imaeda, H., Takahashi, K., Kasumi, E., Bamba, S., Fujiyama, Y., & Andoh, A. (2013) · Journal of Gastroenterology and Hepatology · doi:10.1111/jgh.12073 · Cited by 304 · see citing works

Extensive Modulation of the Fecal Metagenome in Children With Crohn’s Disease During Exclusive Enteral Nutrition

Quince, C., Ijaz, U. Z., Loman, N. J., Eren, A. M., Saulnier, D. M. A., Russell, J. A., Haig, S., Calus, S., Quick, J., Barclay, A. R., et al. (2015) · The American Journal of Gastroenterology · doi:10.1038/ajg.2015.357 · Cited by 285 · see citing works

Alterations in the gut microbiome of children with severe ulcerative colitis

Michail, S. K., Durbin, M. D., Turner, D., Griffiths, A. M., Mack, D. R., Hyams, J., LeLeiko, N. S., Kenche, H., Stolfi, A., & Wine, E. (2011) · Inflammatory Bowel Diseases · doi:10.1002/ibd.22860 · Cited by 283 · see citing works

Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers

Lavelle, A., Lennon, G., O'Sullivan, Ó., Docherty, N., Balfe, Á., Maguire, A., Mulcahy, H., Doherty, G., O'Donoghue, D., Hyland, J., et al. (2015) · Gut · doi:10.1136/gutjnl-2014-307873 · Cited by 259 · see citing works

Alterations in the Intestinal Microbiome (Dysbiosis) as a Predictor of Relapse After Infliximab Withdrawal in Crohnʼs Disease

Rajca, S., Grondin, V., Louis, E. J., Vernier-Massouille, G., Grimaud, J., Bouhnik, Y., Laharie, D., Dupas, J., Pillant, H., Picon, L., et al. (2014) · Inflammatory Bowel Diseases · doi:10.1097/mib.0000000000000036 · Cited by 236 · see citing works

Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn’s disease using terminal restriction fragment length polymorphism analysis

Andoh, A., Imaeda, H., Aomatsu, T., Inatomi, O., Bamba, S., Sasaki, M., Saito, Y., Tsujikawa, T., & Fujiyama, Y. (2011) · Journal of Gastroenterology · doi:10.1007/s00535-010-0368-4 · Cited by 220 · see citing works

Systematic Review and Meta-analysis

Narula, N., Kassam, Z., Yuan, Y., Colombel, J., Ponsioen, C. Y., Reinisch, W., & Moayyedi, P. (2017) · Inflammatory Bowel Diseases · doi:10.1097/mib.0000000000001228 · Cited by 206 · see citing works

Characteristics of Faecal Microbiota in Paediatric Crohn’s Disease and Their Dynamic Changes During Infliximab Therapy

Wang, Y., Gao, X., Ghozlane, A., Hu, H., Li, X., Xiao, Y., Li, D., Yu, G., & Zhang, T. (2017) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjx153 · Cited by 174 · see citing works

Mucosal Barrier in Ulcerative Colitis and Crohn’s Disease

Dorofeyev, A. E., Василенко, И. В., Rassokhina, O. A., & Kondratyuk, R. B. (2013) · Gastroenterology Research and Practice · doi:10.1155/2013/431231 · Cited by 172 · see citing works

Interactions between Diet, Bile Acid Metabolism, Gut Microbiota, and Inflammatory Bowel Diseases

Devkota, S., & Chang, E. B. (2015) · Digestive Diseases · doi:10.1159/000371687 · Cited by 167 · see citing works

The biodiversity and composition of the dominant fecal microbiota in patients with inflammatory bowel disease

Sha, S., Xu, B., Wang, X., Zhang, Y., Wang, H., Kong, X., Zhu, H., & Wu, K. (2012) · Diagnostic Microbiology and Infectious Disease · doi:10.1016/j.diagmicrobio.2012.11.022 · Cited by 165 · see citing works

Multicenter analysis of fecal microbiota profiles in Japanese patients with Crohn’s disease

Andoh, A., Kuzuoka, H., Tsujikawa, T., Nakamura, S., Hirai, F., Suzuki, Y., Matsui, T., Fujiyama, Y., & Matsumoto, T. (2012) · Journal of Gastroenterology · doi:10.1007/s00535-012-0605-0 · Cited by 163 · see citing works

Reduced Diversity and Imbalance of Fecal Microbiota in Patients with Ulcerative Colitis

Nemoto, H., Kataoka, K., Ishikawa, H., Ikata, K., Arimochi, H., Iwasaki, T., Ohnishi, Y., Kuwahara, T., & Yasutomo, K. (2012) · Digestive Diseases and Sciences · doi:10.1007/s10620-012-2236-y · Cited by 152 · see citing works

Altered intestinal microbiota and blood T cell phenotype are shared by patients with Crohn's disease and their unaffected siblings

Hedin, C. R. H., McCarthy, N. E., Louis, P., Farquharson, F. M., McCartney, S. A., Taylor, K. M., Prescott, N. J., Murrells, T., Stagg, A. J., Whelan, K., et al. (2014) · Gut · doi:10.1136/gutjnl-2013-306226 · Cited by 145 · see citing works

Alterations of mucosal microbiota in the colon of patients with inflammatory bowel disease revealed by real time polymerase chain reaction amplification of 16S ribosomal ribonucleic acid

Ramakrishna, B., Jayakanthan, P., Pugazhendhi, S., & Kabeerdoss, J. (2015) · The Indian Journal of Medical Research · doi:10.4103/0971-5916.162091 · Cited by 145 · see citing works

Study of the Viral and Microbial Communities Associated With Crohn's Disease: A Metagenomic Approach

Pérez‐Brocal, V., García-López, R., Vázquez-Castellanos, J. F., Nos, P., Beltrán, B., Latorre, A., & Moyá, A. (2013) · Clinical and Translational Gastroenterology · doi:10.1038/ctg.2013.9 · Cited by 132 · see citing works

Crohnʼs disease-associated Escherichia coli LF82 aggravates colitis in injured mouse colon via signaling by flagellin

Carvalho, F. A., Barnich, N., Sauvanet, P., Darcha, C., Gelot, A., & Darfeuille–Michaud, A. (2008) · Inflammatory Bowel Diseases · doi:10.1002/ibd.20423 · Cited by 130 · see citing works

Intestinal Bacteria Composition and Translocation of Bacteria in Inflammatory Bowel Disease

Vrakas, S., Mountzouris, K. C., Michalopoulos, G., Karamanolis, G. P., Papatheodoridis, G., Tzathas, C., & Gazouli, M. (2017) · PLoS ONE · doi:10.1371/journal.pone.0170034 · Cited by 130 · see citing works

Composition and function of the pediatric colonic mucosal microbiome in untreated patients with ulcerative colitis

Shah, R., Cope, J. L., Nagy‐Szakal, D., Dowd, S. E., Versalovic, J. A., Hollister, E. B., & Kellermayer, R. (2016) · Gut Microbes · doi:10.1080/19490976.2016.1190073 · Cited by 116 · see citing works

Increased Enterococcus faecalis infection is associated with clinically active Crohn disease

Zhou, Y., Chen, H., He, H., Du, Y., Hu, J., Li, Y., Li, Y., Zhou, Y., Wang, H., Chen, Y., et al. (2016) · Medicine · doi:10.1097/md.0000000000005019 · Cited by 116 · see citing works

Disease Severity and Immune Activity Relate to Distinct Interkingdom Gut Microbiome States in Ethnically Distinct Ulcerative Colitis Patients

Mar, J. S., LaMere, B. J., Lin, D. L., Levan, S., Nazareth, M., Mahadevan, U., & Lynch, S. V. (2016) · mBio · doi:10.1128/mbio.01072-16 · Cited by 113 · see citing works

Effect of Exclusive Enteral Nutrition on the Microbiota of Children With Newly Diagnosed Crohn's Disease

Kaakoush, N. O., Day, A. S., Leach, S. T., Lemberg, D. A., Nielsen, S. J., & Mitchell, H. M. (2015) · Clinical and Translational Gastroenterology · doi:10.1038/ctg.2014.21 · Cited by 112 · see citing works

Gram-negative bacteria account for main differences between faecal microbiota from patients with ulcerative colitis and healthy controls

Vigsnæs, L. K., Brynskov, J., Steenholdt, C., Wilcks, A., & Licht, T. R. (2012) · Beneficial Microbes · doi:10.3920/bm2012.0018 · Cited by 107 · see citing works

Altered Fecal Microbiota in Paediatric Inflammatory Bowel Disease

Maukonen, J., Kolho, K., Paasela, M., Honkanen, J. K., Klemetti, P., Vaarala, O., & Saarela, M. (2015) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjv147 · Cited by 106 · see citing works

Gut microbiota differs between children with Inflammatory Bowel Disease and healthy siblings in taxonomic and functional composition: a metagenomic analysis

Knoll, R. L., Forslund, S. K., Kultima, J. R., Meyer, C. U., Kullmer, U., Sunagawa, S., Bork, P., & Gehring, S. (2016) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00293.2016 · Cited by 94 · see citing works

Siblings of patients with Crohn’s disease exhibit a biologically relevant dysbiosis in mucosal microbial metacommunities

Hedin, C. R. H., Gast, C., Rogers, G. B., Cuthbertson, L., McCartney, S. A., Stagg, A. J., Lindsay, J. O., & Whelan, K. (2015) · Gut · doi:10.1136/gutjnl-2014-308896 · Cited by 90 · see citing works

Distribution and Abundance of Bacteria in the Gut of a Soil-feeding Termite Procubitermes aburiensis (Termitidae, Termitinae)

Bignell, D. E., Oskarsson, H., & Anderson, J. M. (1980) · Microbiology · doi:10.1099/00221287-117-2-393 · Cited by 79 · see citing works

Mucosa-Associated Ileal Microbiota in New-Onset Pediatric Crohnʼs Disease

Assa, A., Butcher, J., Li, J. S. Y., Elkadri, A. A., Sherman, P. M., Muise, A. M., Stintzi, A. P., & Mack, D. R. (2016) · Inflammatory Bowel Diseases · doi:10.1097/mib.0000000000000776 · Cited by 78 · see citing works

Changes of faecal microbiota in patients with Crohn's disease treated with an elemental diet and total parenteral nutrition

Shiga, H., Kajiura, T., Shinozaki, J., Takagi, S., Kinouchi, Y., Takahashi, S., Negoro, K., Endo, K., Kakuta, Y., Suzuki, M., et al. (2012) · Digestive and Liver Disease · doi:10.1016/j.dld.2012.04.014 · Cited by 76 · see citing works

Distinct Microbial Populations Exist in the Mucosa-associated Microbiota of Diarrhea Predominant Irritable Bowel Syndrome and Ulcerative Colitis

Zhong, W., Lu, X., Shi, H., Zhao, G., Song, Y., Wang, Y., Zhang, J., Jin, Y., & Wang, S. (2017) · Journal of Clinical Gastroenterology · doi:10.1097/mcg.0000000000000961 · Cited by 70 · see citing works

Molecular-Phylogenetic Characterization of the Microbiota in Ulcerated and Non-Ulcerated Regions in the Patients with Crohn's Disease

Li, Q., Wang, C., Tang, C. X., Li, N., & Li, J. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034939 · Cited by 63 · see citing works

The Impact of NOD2 Variants on Fecal Microbiota in Crohn’s Disease and Controls Without Gastrointestinal Disease

Kennedy, N. A., Lamb, C. A., Berry, S. H., Walker, A. W., Mansfield, J. C., Parkes, M., Simpkins, R., Tremelling, M., Nutland, S. L., Parkhill, J., et al. (2018) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izx061 · Cited by 50 · see citing works

Does the intestinal microbial community of Korean Crohn’s disease patients differ from that of western patients?

Eun, C. S., Kwak, M.-J., Han, D. S., Lee, A. R., Park, D. I., Yang, S., Kim, Y. S., & Kim, J. F. (2016) · BMC Gastroenterology · doi:10.1186/s12876-016-0437-0 · Cited by 48 · see citing works

The distinct features of microbial ‘dysbiosis’ of Crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred

Ijaz, U. Z., Quince, C., Hanske, L., Loman, N. J., Calus, S., Bertz, M., Edwards, C. A., Gaya, D. R., Hansen, R., McGrogan, P., et al. (2017) · PLoS ONE · doi:10.1371/journal.pone.0172605 · Cited by 44 · see citing works

Terminal Restriction Fragment Length Polymorphism Analysis of the Gut Microbiota Profiles of Pediatric Patients with Inflammatory Bowel Disease

Aomatsu, T., Imaeda, H., Fujimoto, T., Takahashi, K., Yoden, A., Tamai, H., Fujiyama, Y., & Andoh, A. (2012) · Digestion · doi:10.1159/000339777 · Cited by 28 · see citing works

Quantitative Analysis of Intestinal Flora of Uygur and Han Ethnic Chinese Patients with Ulcerative Colitis

Yao, P., Cui, M., Wang, H., Gao, H., Wang, L., Yang, T., & Cheng, Y. (2015) · Gastroenterology Research and Practice · doi:10.1155/2016/9186232 · Cited by 28 · see citing works

Correlation between intestinal flora and serum inflammatory factors in patients with Crohn's disease.

Zhang, J., Sl, C., & Lb, L. (2017) · PubMed · Cited by 18 · see citing works

The gut microbiome as a modulator of healthy ageing

Ghosh, T. S., Shanahan, F., & O’Toole, P. W. (2022) · Nature Reviews Gastroenterology &amp; Hepatology · doi:10.1038/s41575-022-00605-x · Cited by 817 · see citing works

A systematic review of gut microbiota composition in observational studies of major depressive disorder, bipolar disorder and schizophrenia

McGuinness, A. J., Davis, J. A., Dawson, S. L., Loughman, A., Collier, F., O’Hely, M., Simpson, C. A., Green, J., Marx, W., Hair, C., et al. (2022) · Molecular Psychiatry · doi:10.1038/s41380-022-01456-3 · Cited by 502 · see citing works

Gut Akkermansia muciniphila ameliorates metabolic dysfunction-associated fatty liver disease by regulating the metabolism of L-aspartate via gut-liver axis

Rao, Y., Kuang, Z., Li, C., Guo, S., Xu, Y., Zhao, D., Hu, Y., Song, B., Jiang, Z., Ge, Z., et al. (2021) · Gut Microbes · doi:10.1080/19490976.2021.1927633 · Cited by 356 · see citing works

Microbiota in inflammatory bowel disease: mechanisms of disease and therapeutic opportunities

Iliev, I. D., Ananthakrishnan, A. N., & Guo, C.-J. (2025) · Nature Reviews Microbiology · doi:10.1038/s41579-025-01163-0 · Cited by 249 · see citing works

Novel Fecal Biomarkers That Precede Clinical Diagnosis of Ulcerative Colitis

Galipeau, H. J., Caminero, A., Turpin, W., Bermudez-Brito, M., Santiago, A., Libertucci, J., Constante, M., Raygoza Garay, J. A., Rueda, G., Armstrong, S., et al. (2021) · Gastroenterology · doi:10.1053/j.gastro.2020.12.004 · Cited by 190 · see citing works

Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study

Leonard, M. M., Valitutti, F., Karathia, H., Pujolassos, M., Kenyon, V., Fanelli, B., Troisi, J., Subramanian, P., Camhi, S., Colucci, A., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2020322118 · Cited by 162 · see citing works

Myelin as a regulator of development of the microbiota-gut-brain axis

Keogh, C. E., Kim, D. H. J., Pusceddu, M. M., Knotts, T. A., Rabasa, G., Sladek, J. A., Hsieh, M. T., Honeycutt, M., Brust-Mascher, I., Barboza, M., et al. (2021) · Brain, Behavior, and Immunity · doi:10.1016/j.bbi.2020.11.001 · Cited by 137 · see citing works

Probiotic mixture VSL# 3: An overview of basic and clinical studies in chronic diseases

Cheng, F.-S., Pan, D., Chang, B., Jiang, M., & Sang, L.-X. (2020) · World Journal of Clinical Cases · doi:10.12998/wjcc.v8.i8.1361 · Cited by 147 · see citing works

Triangulating nutrigenomics, metabolomics and microbiomics toward personalized nutrition and healthy living

Lagoumintzis, G., & Patrinos, G. P. (2023) · Human Genomics · doi:10.1186/s40246-023-00561-w · Cited by 132 · see citing works

Gut Microbiome in Psoriasis: An Updated Review

Sikora, M., Stec, A., Chrabaszcz, M., Knot, A., Waskiel-Burnat, A., Rakowska, A., Olszewska, M., & Rudnicka, L. (2020) · Pathogens · doi:10.3390/pathogens9060463 · Cited by 118 · see citing works

Systematic review of donor and recipient predictive biomarkers of response to faecal microbiota transplantation in patients with ulcerative colitis

Rees, N. P., Shaheen, W., Quince, C., Tselepis, C., Horniblow, R. D., Sharma, N., Beggs, A. D., Iqbal, T. H., & Quraishi, M. N. (2022) · EBioMedicine · doi:10.1016/j.ebiom.2022.104088 · Cited by 73 · see citing works

Pro-Inflammatory Diet Is Correlated with High Veillonella rogosae, Gut Inflammation and Clinical Relapse of Inflammatory Bowel Disease

Rocha, I. M. G. D., Torrinhas, R., Fonseca, D., Lyra, C. D. O., de Sousa Alves Neri, J. L., Balmant, B. D., Callado, L., Charlton, K., Queiroz, N., & Waitzberg, D. L. (2023) · Nutrients · doi:10.3390/nu15194148 · Cited by 43 · see citing works

Bacteroides dorei BDX-01 alleviates DSS-induced experimental colitis in mice by regulating intestinal bile salt hydrolase activity and the FXR-NLRP3 signaling pathway

Sun, X., Chen, Z., Yu, L., Zeng, W., Sun, B., Fan, H., & Bai, Y. (2023) · Frontiers in Pharmacology · doi:10.3389/fphar.2023.1205323 · Cited by 33 · see citing works

Whole-genome sequencing and genomic analysis of four Akkermansia strains newly isolated from human feces

Lu, W., Zha, B., Lyu, J., LingHu, C., Chen, J., Deng, S., Zhang, X., Li, L., & Wang, G. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1500886 · Cited by 4 · see citing works

31288 Occurrence of inflammatory bowel disease in patients with chronic inflammatory skin diseases

Schneeweiss, M. C., Kirchgesner, J., & Wyss, R. (2022) · Journal of the American Academy of Dermatology · doi:10.1016/j.jaad.2022.06.378

Special Issue “Dietary Bioactive Components in Inflammatory Bowel Disease”

Gasparrini, M., & Mazzoni, L. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25073569 · Cited by 4 · see citing works

Origins and Directions of Inflammatory Bowel Disease, Early Studies of the “Nonspecific” Inflammatory Bowel Diseases

Levine, J. S. (2003) · Gastroenterology · doi:10.1016/s0016-5085(03)70023-7 · Cited by 6 · see citing works

Mo1835 PREVALENCE OF OCULAR DISEASES IN INFLAMMATORY BOWEL DISEASE (IBD): A NATIONAL, POPULATION-BASED STUDY

Adoor, D. M., Sheriff, M. Z., Mansoor, E., et al. (2020) · Gastroenterology · doi:10.1016/s0016-5085(20)33035-3

Bioinspired and biomimetic strategies for inflammatory bowel disease therapy

Zhang, L., Ye, P., Zhu, H., Zhu, L., Ren, Y., & Lei, J. (2024) · Journal of Materials Chemistry B · doi:10.1039/d3tb02995f · Cited by 10 · see citing works