Triangulating nutrigenomics, metabolomics and microbiomics toward personalized nutrition and healthy living

An obesity-associated gut microbiome with increased capacity for energy harvest

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Diet rapidly and reproducibly alters the human gut microbiome

David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100 · see citing works

A core gut microbiome in obese and lean twins

Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823 · see citing works

Obesity alters gut microbial ecology

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Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics

Gibson, G. R., Hutkins, R., Sanders, M. E., Prescott, S. L., Reimer, R. A., Salminen, S. J., Scott, K., Stanton, C., Swanson, K. S., Cani, P. D., et al. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.75 · Cited by 5,634 · see citing works

Revised Estimates for the Number of Human and Bacteria Cells in the Body

Sender, R., Fuchs, S., & Milo, R. (2016) · PLOS Biology · doi:10.1371/journal.pbio.1002533 · Cited by 5,425 · see citing works

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

den Besten, G., van Eunen, K., Groen, A. K., Venema, K., Reijngoud, D.-J., & Bakker, B. M. (2013) · Journal of Lipid Research · doi:10.1194/jlr.r036012 · Cited by 5,048 · see citing works

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

Koeth, R. A., Wang, Z., Levison, B. S., Buffa, J. A., Org, E., Sheehy, B. T., Britt, E. B., Fu, X., Wu, Y., Li, L., et al. (2013) · Nature Medicine · doi:10.1038/nm.3145 · Cited by 4,386 · see citing works

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

Ridaura, V. K., Faith, J. J., Rey, F. E., Cheng, J., Duncan, A. E., Kau, A. L., Griffin, N. W., Lombard, V., Henrissat, B., Bain, J. R., et al. (2013) · Science · doi:10.1126/science.1241214 · Cited by 3,788 · see citing works

The impact of the gut microbiota on human health: an integrative view

Clemente, J. C., Ursell, L. K., Parfrey, L. W., & Knight, R. (2012) · Cell · doi:10.1016/j.cell.2012.01.035 · Cited by 3,710 · see citing works

Duodenal Infusion of Donor Feces for Recurrent <i>Clostridium difficile</i>

van Nood, E., Vrieze, A., Nieuwdorp, M., Fuentes, S., Zoetendal, E. G., de Vos, W. M., Visser, C. E., Kuijper, E. J., Bartelsman, J. F. W. M., Tijssen, J. G. P., et al. (2013) · New England Journal of Medicine · doi:10.1056/nejmoa1205037 · Cited by 3,708 · see citing works

The Human Intestinal Microbiome in Health and Disease

Lynch, S. V., & Pedersen, O. (2016) · New England Journal of Medicine · doi:10.1056/nejmra1600266 · Cited by 3,637 · see citing works

Gut microbiota regulate motor deficits and neuroinflammation in a model of Parkinson's disease

Sampson, T. R., Debelius, J. W., Thron, T., Janssen, S., Shastri, G. G., Ilhan, Z. E., Challis, C., Schretter, C. E., Rocha, S., Gradinaru, V., et al. (2016) · Cell · doi:10.1016/j.cell.2016.11.018 · Cited by 3,622 · see citing works

The human microbiome: at the interface of health and disease

Cho, I., & Blaser, M. J. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3182 · Cited by 3,449 · see citing works

Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk

Tang, W. H. W., Wang, Z., Levison, B. S., Koeth, R. A., Britt, E. B., Fu, X., Wu, Y., & Hazen, S. L. (2013) · New England Journal of Medicine · doi:10.1056/nejmoa1109400 · Cited by 3,402 · see citing works

Forecasting the Future of Cardiovascular Disease in the United States: A Policy Statement From the American Heart Association

Heidenreich, P. A., Trogdon, J. G., Khavjou, O. A., Butler, J., Dracup, K., Ezekowitz, M. D., Finkelstein, E. A., Hong, Y., Johnston, S. C., Khera, A., et al. (2011) · Circulation · doi:10.1161/cir.0b013e31820a55f5 · Cited by 3,208 · see citing works

Microbiota in health and diseases

Hou, K., Wu, Z.-X., Chen, X.-Y., Wang, J.-Q., Zhang, D., Xiao, C., Zhu, D., Koya, J. B., Wei, L., Li, J., et al. (2022) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-022-00974-4 · Cited by 3,171 · see citing works

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

Lloyd-Price, J., Arze, C., Ananthakrishnan, A. N., Schirmer, M., Avila-Pacheco, J., Poon, T. W., Andrews, E., Ajami, N. J., Bonham, K. S., Brislawn, C. J., et al. (2019) · Nature · doi:10.1038/s41586-019-1237-9 · Cited by 3,143 · see citing works

The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication

Silva, Y. P., Bernardi, A., & Frozza, R. L. (2020) · Frontiers in Endocrinology · doi:10.3389/fendo.2020.00025 · Cited by 3,043 · cited 1× · see citing works

Personalized nutrition by prediction of glycemic responses

Zeevi, D., Korem, T., Zmora, N., Israeli, D., Rothschild, D., Weinberger, A., Ben-Yacov, O., Lador, D., Avnit-Sagi, T., Lotan-Pompan, M., et al. (2015) · Cell · doi:10.1016/j.cell.2015.11.001 · Cited by 2,929 · see citing works

Gut microbiota functions: metabolism of nutrients and other food components

Rowland, I., Gibson, G., Heinken, A., Scott, K., Swann, J., Thiele, I., & Tuohy, K. (2018) · European Journal of Nutrition · doi:10.1007/s00394-017-1445-8 · Cited by 2,878 · see citing works

Human nutrition, the gut microbiome and the immune system

Kau, A. L., Ahern, P. P., Griffin, N. W., Goodman, A. L., & Gordon, J. I. (2011) · Nature · doi:10.1038/nature10213 · Cited by 2,588 · see citing works

Role of the gut microbiota in nutrition and health

Valdes, A. M., Walter, J., Segal, E., & Spector, T. D. (2018) · BMJ · doi:10.1136/bmj.k2179 · Cited by 2,375 · see citing works

Microbial degradation of complex carbohydrates in the gut

Flint, H. J., Scott, K. P., Duncan, S. H., Louis, P., & Forano, E. (2012) · Gut Microbes · doi:10.4161/gmic.19897 · Cited by 2,331 · see citing works

Microbiome definition re-visited: old concepts and new challenges

Berg, G., Rybakova, D., Fischer, D., Cernava, T., Vergès, M.-C. C., Charles, T., Chen, X., Cocolin, L., Eversole, K., Corral, G. H., et al. (2020) · Microbiome · doi:10.1186/s40168-020-00875-0 · Cited by 2,275 · see citing works

Artificial sweeteners induce glucose intolerance by altering the gut microbiota

Suez, J., Korem, T., Zeevi, D., Zilberman-Schapira, G., Thaiss, C. A., Maza, O., Israeli, D., Zmora, N., Gilad, S., Weinberger, A., et al. (2014) · Nature · doi:10.1038/nature13793 · Cited by 2,067 · cited 1× · see citing works

The epidemiology of global micronutrient deficiencies

Bailey, R. L., West Jr., K. P., & Black, R. E. (2015) · Annals of Nutrition and Metabolism · doi:10.1159/000371618 · Cited by 2,035 · cited 1× · see citing works

Gut microbiome structure and metabolic activity in inflammatory bowel disease

Franzosa, E. A., Sirota-Madi, A., Avila-Pacheco, J., Fornelos, N., Haiser, H. J., Reinker, S., Vatanen, T., Hall, A. B., Mallick, H., McIver, L. J., et al. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0306-4 · Cited by 1,995 · see citing works

Variations in the Prevalence of Obesity Among European Countries, and a Consideration of Possible Causes

Blundell, J. E., Baker, J. L., Boyland, E. J., Blaak, E. E., Charzewska, J., Henauw, S. D., Frühbeck, G., González‐Gross, M., Hebebrand, J., Holm, L., et al. (2017) · Obesity Facts · doi:10.1159/000455952 · Cited by 1,980 · see citing works

A decrease of the butyrate-producing species <i>Roseburia hominis</i> and <i>Faecalibacterium prausnitzii</i> defines dysbiosis in patients with ulcerative colitis

Machiels, K., Joossens, M., Sabino, J., De Preter, V., Arijs, I., Eeckhaut, V., Ballet, V., Claes, K., Van Immerseel, F., Verbeke, K., et al. (2014) · Gut · doi:10.1136/gutjnl-2013-304833 · Cited by 1,904 · see citing works

You are what you eat: Diet, health and the gut microbiota

Zmora, N., Suez, J., & Elinav, E. (2019) · Nature Reviews Gastroenterology &amp; Hepatology · doi:10.1038/s41575-018-0061-2 · Cited by 1,792 · see citing works

Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

Kovatcheva-Datchary, P., Nilsson, A., Akrami, R., Lee, Y. S., De Vadder, F., Arora, T., Hallen, A., Martens, E., Björck, I., & Bäckhed, F. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.10.001 · Cited by 1,731 · see citing works

Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: A connection between endogenous alcohol and NASH

Zhu, L., Baker, S. S., Gill, C., Liu, W., Alkhouri, R., Baker, R. D., & Gill, S. R. (2013) · Hepatology · doi:10.1002/hep.26093 · Cited by 1,708 · see citing works

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features

Zmora, N., Zilberman-Schapira, G., Suez, J., Mor, U., Dori-Bachash, M., Bashiardes, S., Kotler, E., Zur, M., Regev-Lehavi, D., Brik, R. B.-Z., et al. (2018) · Cell · doi:10.1016/j.cell.2018.08.041 · Cited by 1,695 · cited 1× · see citing works

Selective stimulation of bifidobacteria in the human colon by oligofructose and inulin

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Probiotics, prebiotics, and synbiotics—approaching a definition

Schrezenmeir, J., & de Vrese, M. (2001) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/73.2.361s · Cited by 1,519 · see citing works

Gut microbiome–mediated bile acid metabolism regulates liver cancer via NKT cells

Ma, C., Han, M., Heinrich, B., Fu, Q., Zhang, Q., Sandhu, M., Agdashian, D., Terabe, M., Berzofsky, J. A., Fako, V., et al. (2018) · Science · doi:10.1126/science.aan5931 · Cited by 1,508 · see citing works

Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial

Moayyedi, P., Surette, M. G., Kim, P. T., Libertucci, J., Wolfe, M., Onischi, C., Armstrong, D., Marshall, J. K., Kassam, Z., Reinisch, W., et al. (2015) · Gastroenterology · doi:10.1053/j.gastro.2015.04.001 · Cited by 1,499 · see citing works

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota

Boursier, J., Mueller, O., Barret, M., Machado, M., Fizanne, L., Araujo‐Perez, F., Guy, C. D., Seed, P. C., Rawls, J. F., David, L. A., et al. (2016) · Hepatology · doi:10.1002/hep.28356 · Cited by 1,483 · see citing works

The gut-liver axis and the intersection with the microbiome

Tripathi, A., Debelius, J., Brenner, D. A., Karin, M., Loomba, R., Schnabl, B., & Knight, R. (2018) · Nature Reviews Gastroenterology &amp; Hepatology · doi:10.1038/s41575-018-0011-z · Cited by 1,480 · see citing works

Bile acid metabolites control TH17 and Treg cell differentiation

Hang, S., Paik, D., Yao, L., Kim, E., Trinath, J., Lu, J., Ha, S., Nelson, B. N., Kelly, S. P., Wu, L., et al. (2019) · Nature · doi:10.1038/s41586-019-1785-z · Cited by 1,457 · see citing works

Microbiome-derived inosine modulates response to checkpoint inhibitor immunotherapy

Mager, L. F., Burkhard, R., Pett, N., Cooke, N. C. A., Brown, K., Ramay, H., Paik, S., Stagg, J., Groves, R. A., Gallo, M., et al. (2020) · Science · doi:10.1126/science.abc3421 · Cited by 1,407 · see citing works

Untargeted Metabolomics Strategies—Challenges and Emerging Directions

Schrimpe‐Rutledge, A. C., Codreanu, S. G., Sherrod, S. D., & MCLEAN, J. A. J. (2016) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-016-1469-y · Cited by 1,391 · see citing works

Polygenic risk scores: from research tools to clinical instruments

Lewis, C. M., & Vassos, E. (2020) · Genome Medicine · doi:10.1186/s13073-020-00742-5 · Cited by 1,360 · see citing works

Gut microbiota-derived metabolites as central regulators in metabolic disorders

Agus, A., Clément, K., & Sokol, H. (2021) · Gut · doi:10.1136/gutjnl-2020-323071 · Cited by 1,347 · see citing works

The microbiome and human cancer

Sepich-Poore, G. D., Zitvogel, L., Straussman, R., Hasty, J., Wargo, J. A., & Knight, R. (2021) · Science · doi:10.1126/science.abc4552 · Cited by 1,332 · see citing works

Short-Chain Fatty-Acid-Producing Bacteria: Key Components of the Human Gut Microbiota

Fusco, W. G., Bernabeu, M., Cintoni, M., Porcari, S., Rinninella, E., Kaitsas, F., Lener, E., Mele, M. C., Gasbarrini, A., Collado, M. C., et al. (2023) · Nutrients · doi:10.3390/nu15092211 · Cited by 1,318 · see citing works

Association Between Dietary Factors and Mortality From Heart Disease, Stroke, and Type 2 Diabetes in the United States

Micha, R., Peñalvo, J. L., Cudhea, F., Imamura, F., Rehm, C. D., & Mozaffarian, D. (2017) · JAMA · doi:10.1001/jama.2017.0947 · Cited by 1,225 · see citing works

Olfactory receptor responding to gut microbiota-derived signals plays a role in renin secretion and blood pressure regulation

Pluznick, J. L., Protzko, R. J., Gevorgyan, H., Peterlin, Z., Sipos, A., Han, J., Brunet, I., Wan, L.-X., Rey, F., Wang, T., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1215927110 · Cited by 1,191 · see citing works

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT

Suez, J., Zmora, N., Zilberman-Schapira, G., Mor, U., Dori-Bachash, M., Bashiardes, S., Zur, M., Regev-Lehavi, D., Ben-Zeev Brik, R., Federici, S., et al. (2018) · Cell · doi:10.1016/j.cell.2018.08.047 · Cited by 1,184 · see citing works

Chronic kidney disease alters intestinal microbial flora

Vaziri, N. D., Wong, J., Pahl, M., Piceno, Y. M., Yuan, J., DeSantis, T. Z., Ni, Z., Nguyen, T.-H., & Andersen, G. L. (2013) · Kidney International · doi:10.1038/ki.2012.345 · Cited by 1,164 · see citing works

Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease

Loomba, R., Seguritan, V., Li, W., Long, T., Klitgord, N., Bhatt, A., Dulai, P. S., Caussy, C., Bettencourt, R., Highlander, S. K., et al. (2017) · Cell Metabolism · doi:10.1016/j.cmet.2017.04.001 · Cited by 1,123 · see citing works

Current Understanding of Dysbiosis in Disease in Human and Animal Models

DeGruttola, A. K., Low, D., Mizoguchi, A., & Mizoguchi, E. (2016) · Inflammatory Bowel Diseases · doi:10.1097/mib.0000000000000750 · Cited by 1,122 · see citing works

The gut microbiota at the intersection of diet and human health

Gentile, C. L., & Weir, T. L. (2018) · Science · doi:10.1126/science.aau5812 · Cited by 1,049 · see citing works

Improvement of insulin sensitivity after lean donor feces in metabolic syndrome is driven by baseline intestinal microbiota composition

Kootte, R. S., Levin, E., Salojärvi, J., Smits, L. P., Hartstra, A. V., Udayappan, S. D., Hermes, G., Bouter, K. E., Koopen, A. M., Holst, J. J., et al. (2017) · Cell Metabolism · doi:10.1016/j.cmet.2017.09.008 · Cited by 1,039 · see citing works

Gut Microbiota and Short Chain Fatty Acids: Implications in Glucose Homeostasis

Portincasa, P., Bonfrate, L., Vacca, M., Angelis, M. D., Farella, I., Lanza, E., Khalil, M., Wang, D. Q. ‐., Sperandio, M., & Ciaula, A. D. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23031105 · Cited by 1,014 · see citing works

Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity

Leclercq, S., Matamoros, S., Cani, P. D., Neyrinck, A. M., Jamar, F., Stärkel, P., Windey, K., Tremaroli, V., Bäckhed, F., Verbeke, K., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1415174111 · Cited by 972 · see citing works

Probiotics, prebiotics, and synbiotics: approaches for modulating the microbial ecology of the gut

COLLINS, M. D., & Gibson, G. R. (1999) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/69.5.1052s · Cited by 899 · see citing works

Diet-microbiota interactions and personalized nutrition

Kolodziejczyk, A. A., Zheng, D., & Elinav, E. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0256-8 · Cited by 879 · see citing works

Global Impacts of Western Diet and Its Effects on Metabolism and Health: A Narrative Review

Clemente‐Suárez, V. J., Beltrán-Velasco, A. I., Redondo-Flórez, L., Martín-Rodríguez, A., & Tornero-Aguilera, J. F. (2023) · Nutrients · doi:10.3390/nu15122749 · Cited by 873 · see citing works

Effect of Fecal Microbiota Transplantation on 8-Week Remission in Patients With Ulcerative Colitis

Costello, S. P., Hughes, P. A., Waters, O. R., Bryant, R. V., Vincent, A. D., Blatchford, P. A., Katsikeros, R., Makanyanga, J. C., Campaniello, M. A., Mavrangelos, C., et al. (2019) · JAMA · doi:10.1001/jama.2018.20046 · Cited by 855 · see citing works

Effects of gut microbes on nutrient absorption and energy regulation

Krajmalnik‐Brown, R., Ilhan, Z., Kang, D., & DiBaise, J. K. (2012) · Nutrition in Clinical Practice · doi:10.1177/0884533611436116 · Cited by 852 · see citing works

The Human Gut Microbiome: From Association to Modulation

Schmidt, T. S. B., Raes, J., & Bork, P. (2018) · Cell · doi:10.1016/j.cell.2018.02.044 · Cited by 845 · see citing works

Microbial Dysbiosis in Colorectal Cancer (CRC) Patients

Sobhani, I., Tap, J., Roudot‐Thoraval, F., Roperch, J. P., Letulle, S., Langella, P., Corthier, G., Nhieu, J. T. V., & Furet, J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016393 · Cited by 832 · see citing works

Effect of Diet on the Gut Microbiota: Rethinking Intervention Duration

Leeming, E. R., Johnson, A. J., Spector, T. D., & Le Roy, C. I. (2019) · Nutrients · doi:10.3390/nu11122862 · Cited by 817 · see citing works

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

Hall, A. B., Yassour, M., Sauk, J., Garner, A., Jiang, X., Arthur, T., Lagoudas, G. K., Vatanen, T., Fornelos, N., Wilson, R., et al. (2017) · Genome Medicine · doi:10.1186/s13073-017-0490-5 · Cited by 777 · see citing works

Colonic microbiome is altered in alcoholism

Mutlu, E. A., Gillevet, P. M., Rangwala, H., Sikaroodi, M., Naqvi, A., Engen, P. A., Kwasny, M., Lau, C. K., & Keshavarzian, A. (2012) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00380.2011 · Cited by 775 · see citing works

Gut microbiota fermentation of prebiotics increases satietogenic and incretin gut peptide production with consequences for appetite sensation and glucose response after a meal

Cani, P. D., Lecourt, E., Dewulf, E. M., Sohet, F. M., Pachikian, B. D., Naslain, D., Backer, F. D., Neyrinck, A. M., & Delzenne, N. M. (2009) · American Journal of Clinical Nutrition · doi:10.3945/ajcn.2009.28095 · Cited by 763 · see citing works

Intestinal microbiota in patients with nonalcoholic fatty liver disease

Mouzaki, M., Comelli, E. M., Arendt, B. M., Bonengel, J., Fung, S. K., Fischer, S. E., McGilvray, I. D., & Allard, J. P. (2013) · Hepatology · doi:10.1002/hep.26319 · Cited by 749 · see citing works

Short chain fatty acids: Microbial metabolites for gut-brain axis signalling

O’Riordan, K. J., Collins, M., Moloney, G. M., Knox, E. G., Aburto, M. R., Fülling, C., Morley, S. J., Clarke, G. A., Schellekens, H., & Cryan, J. F. (2022) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2022.111572 · Cited by 742 · see citing works

Weight loss during oligofructose supplementation is associated with decreased ghrelin and increased peptide YY in overweight and obese adults

Parnell, J. A., & Reimer, R. A. (2009) · American Journal of Clinical Nutrition · doi:10.3945/ajcn.2009.27465 · Cited by 728 · see citing works

Alcoholic Liver Disease: Pathogenesis and Current Management

Osna, N. (2017) · Alcohol Research: Current Reviews · doi:10.35946/arcr.v38.2.01 · Cited by 724 · see citing works

Fecal Microbiome and Volatile Organic Compound Metabolome in Obese Humans With Nonalcoholic Fatty Liver Disease

Raman, M., Ahmed, I., Gillevet, P. M., Probert, C. S., Ratcliffe, N. M., Smith, S., Greenwood, R., Sikaroodi, M., Lam, V., Crotty, P., et al. (2013) · Clinical Gastroenterology and Hepatology · doi:10.1016/j.cgh.2013.02.015 · Cited by 672 · see citing works

Variations of oral microbiota are associated with pancreatic diseases including pancreatic cancer

Farrell, J. J., Zhang, L., Zhou, H., Chia, D., Elashoff, D., Akin, D., Paster, B. J., Joshipura, K., & Wong, D. T. W. (2012) · Gut · doi:10.1136/gutjnl-2011-300784 · Cited by 662 · see citing works

The Gut Microbiota in the First Decade of Life

Derrien, M., Alvarez, A., & de Vos, W. M. (2019) · Trends in Microbiology · doi:10.1016/j.tim.2019.08.001 · Cited by 648 · see citing works

Expansion of Urease- and Uricase-Containing, Indole- and p-Cresol-Forming and Contraction of Short-Chain Fatty Acid-Producing Intestinal Microbiota in ESRD

Wong, J., Piceno, Y. M., DeSantis, T. Z., Pahl, M. V., Andersen, G. L., & Vaziri, N. D. (2014) · American Journal of Nephrology · doi:10.1159/000360010 · Cited by 638 · see citing works

Personalised nutrition and health

Ordovás, J. M., Ferguson, L. R., Tai, E. S., & Mathers, J. C. (2018) · BMJ · doi:10.1136/bmj.k2173 · Cited by 634 · see citing works

Differences in gut microbiota in patients with vs without inflammatory bowel diseases: A systematic review

Pittayanon, R., Lau, J. T., Leontiadis, G. I., Tse, F., Yuan, Y., Surette, M., & Moayyedi, P. (2020) · Gastroenterology · doi:10.1053/j.gastro.2019.11.294 · Cited by 623 · see citing works

Systematic review with meta‐analysis: the efficacy of prebiotics, probiotics, synbiotics and antibiotics in irritable bowel syndrome

Ford, A. C., Harris, L. A., Lacy, B. E., Quigley, E. M. M., & Moayyedi, P. (2018) · Alimentary Pharmacology &amp; Therapeutics · doi:10.1111/apt.15001 · Cited by 619 · see citing works

Recovery of ethanol-induced <i>Akkermansia muciniphila</i> depletion ameliorates alcoholic liver disease

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The interplay between nutrigenomics and low-carbohydrate ketogenic diets in personalized healthcare

Almoghrabi, Y. M., Eldakhakhny, B. M., Bima, A. I. H., Sakr, H. F., Ajabnoor, G., Gad, H., Mohammad, F. A. H., Elsamanoudy, S. A., Awan, A. Z., & Elsamanoudy, A. Z. (2025) · Frontiers in Nutrition · doi:10.3389/fnut.2025.1595316 · Cited by 3 · see citing works

Bioactive Peptides from Quinoa (Chenopodium quinoa Willd.) as Modulators of the Gut Microbiome: A Scoping Review of Preclinical Evidence

Caicedo, N., Liscano, Y., & Oñate-Garzón, J. (2025) · Nutrients · doi:10.3390/nu17203215 · Cited by 3 · see citing works

Population health management genomic new-born screens and multi-omics intercepts

Henry, J. A. (2025) · Frontiers in Artificial Intelligence · doi:10.3389/frai.2024.1496942 · Cited by 3 · see citing works

Protective effects of dill fruit against acute acetic acid‐induced ulcerative colitis by reducing inflammation and oxidative stress in rats

Brinsi, C., Khadraoui, Y., Mhimdi, M., Selmi, S., Sammari, H., Jedidi, S., Selmi, H., & Sebaï, H. (2025) · Physiological Reports · doi:10.14814/phy2.70393 · Cited by 2 · see citing works

Genetic predispositions and nutritional strategies: a review of nutrigenomics in Parkinson’s disease

Mohamed, Y. A., Nadeem, A. A. A., Ismail, L. M., Ghallab, Y. K., Ouédraogo, R. J., Elhelw, J., Ahmed, M., & Tharwat, E. K. (2025) · Neuroscience · doi:10.1016/j.neuroscience.2025.12.012 · Cited by 2 · see citing works

Micro- and Nanoplastics and Human Health: Role of Food Nutrients Targeting Nfe2l2 Gene in Diabetes

Scuto, M. C., Lombardo, C., Musso, N., Bonacci, P. G., Lupo, G., Anfuso, C. D., & Salinaro, A. T. (2026) · Nutrients · doi:10.3390/nu18040600 · Cited by 2 · see citing works

Decoding the Human Polybiome Through AI and Nutrigenomics in Next Generation Personalized Health

Bansal, H., Arshita, & Srija, K. D. (2026) · Advances in computational intelligence and robotics book series · doi:10.4018/979-8-3373-3121-8.ch002 · Cited by 2 · see citing works

Interactions between nutrition and the epigenome: how can it be harnessed for public health?

Anastasopoulou, M., Dereki, I., Sgourou, A., & Lagoumintzis, G. (2026) · Future Science OA · doi:10.1080/20565623.2026.2641015 · Cited by 4 · see citing works

Artificial intelligence-enabled foodomics: integrating multi-omics, personalized drug discovery, nutrition, and sustainable food systems

Fareed, M. M., & Shityakov, S. (2026) · In Silico Research in Biomedicine · doi:10.1016/j.insi.2026.100378 · Cited by 2 · see citing works

Reducing bias and enhancing equity in AI-enabled precision nutrition: addressing measurement error across wearables, multiomics, and dietary data

Mai, A., Luan, Y., Loy, S. L., Qin, C., Ji, H., Obeng, A., Oladuti, M., Ejima, K., Mok, K. T., Kaur, S., et al. (2026) · Frontiers in Digital Health · doi:10.3389/fdgth.2026.1805704 · Cited by 3 · see citing works

The Nutri-Exposome Intelligence Framework: Integrating Multi-Omics, Machine Learning, and Digital Nutrition for Precision Chronic Disease Prevention

Ang, M. Y., & Choo, S. W. (2026) · Nutrients · doi:10.3390/nu18111826 · Cited by 2 · see citing works

Food-derived dietary alkaloids: structure–biofunctionality relationships in modulating gut microbial biofilms for downregulation of colorectal carcinogenesis

Mazumder, S., Bhattacharya, D., Lahiri, D., Nag, M., Maity, S., Debpriya, S., Kumar, N., Singh, V., Sharma, S., Dwivedi, S. P., et al. (2026) · Food Research International · doi:10.1016/j.foodres.2026.119629 · Cited by 2 · see citing works

Food metabolomics for improvement of nutrition and well-being

Afifah, E. N., & Putri, S. P. (2024) · BIO Web of Conferences · doi:10.1051/bioconf/202412707001 · Cited by 2 · see citing works

Sports nutrition as an example of effective implementation of innovative trends in nutrition: personalization and digitalization (literature review)

Nikityuk, D. B., Korosteleva, M. M., & Tarmaeva, I. Y. (2025) · Health Care of the Russian Federation · doi:10.47470/0044-197x-2025-69-1-65-69 · Cited by 2 · see citing works

Precision nutrition: Paving the path from potential to practice through systems science and ethical translation

Fayyaz, K., & Khalid, N. (2025) · Nutrition and Health · doi:10.1177/02601060251392227 · Cited by 2 · see citing works

Unveiling the Molecular Fingerprint: Mass Spectrometry in Metabolomics

Abdi, G., Dhariwal, R., Patil, N., Upadhyay, B., Jain, M., & Tarighat, M. A. (2024) · Springer eBooks · doi:10.1007/978-981-97-7459-3_6 · Cited by 1 · see citing works

Let the food be medicine: A paradigm shift post Covid-19

Habib, M., Singh, S., Jan, S., Jan, K., Maqsood, S., & Bashir, K. (2025) · Food and Humanity · doi:10.1016/j.foohum.2025.100849 · Cited by 1 · see citing works

Leveraging Industry 4.0 Technologies to Ensure Healthy Food and Support SDG 3

Hassoun, A. (2025) · Sustainable development goals series · doi:10.1007/978-3-032-06527-8_5 · Cited by 1 · see citing works

Future trends on functional foods

Mandim, F., de Albuquerque, B. R., & Barros, L. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-29983-4.00013-2 · Cited by 1 · see citing works

Grapes and Transcriptomics: Fueling the Nutrigenomics Era

Park, E.-J., Dave, A., & Pezzuto, J. M. (2025) · Springer eBooks · doi:10.1007/978-3-031-96913-3_8 · Cited by 1 · see citing works

Integrative Nutrigenomics Approach in Polycystic Ovarian Syndrome: Targeting Gene-Diet Interactions for Personalized Nutraceutical Interventions

Singh, S., Rana, M., Rajput, S. K., Mishra, R. K., Mishra, S., & Arya, V. (2026) · Journal of Nutrition · doi:10.1016/j.tjnut.2026.101371 · Cited by 1 · see citing works

Human DNA levels in feces reflect gut inflammation and associate with presence of gut species in IBD patients across the age spectrum

Mazzoni, C., Ochana, B.-L., Orlanski‐Meyer, E., Yaʼacov, A. B., Focht, G., Harpenas, E., Shmorak, S., Ledder, O., Lev‐Tzion, R., Shemer, R., et al. (2026) · Microbiome · doi:10.1186/s40168-026-02344-6 · Cited by 1 · see citing works

AI-Guided Monoclonal Antibody Design Integrating Polybiome and Nutrigenomic Insights

Tabll, A. A. (2026) · Advances in computational intelligence and robotics book series · doi:10.4018/979-8-3373-3121-8.ch004 · Cited by 1 · see citing works

The Impact of Diet on Long-Term Oncological Outcomes: Investigating Nutritional Mechanisms in Cancer Prevention Management and Prognosis

Hayat, S., Ahmad, J., Naeem, S., Yaseen, F., Aamir, S., Guida, F., Luongo, L., & Maione, S. (2026) · Nutrients · doi:10.3390/nu18060881 · Cited by 1 · see citing works

Clinical Impact of Macronutrients and Micronutrients: A Review of Nutritional Balance, Deficiency Disorders, and Therapeutic Applications

Radhika, M., Mohan, D. S., Singh, H. J., Kadwe, P., Prajapati, J. B., Mansuri, S. H., & Sonis, J. J. (2026) · Cureus · doi:10.7759/cureus.105305 · Cited by 1 · see citing works

Optimizing Omega-3 Polyunsaturated Fatty Acids for Healthy Ageing: Human Intake Evidence and Dairy Cow Dietary Interventions for Milk Enrichment

Dimopoulou, M., Madesis, P. B., Dimopoulou, A. M., & Gortzi, O. (2026) · Foods · doi:10.3390/foods15061079 · Cited by 1 · see citing works

Functional foods and nutraceuticals in metabolic and non-communicable diseases: an integrative review

Debri, R. P., Paragliola, R. M., Yazdanpanah, S., Palmiero, F., LORENZO, A. D., Conte, R., & Peluso, G. (2026) · Exploration of Foods and Foodomics · doi:10.37349/eff.2026.1010157 · Cited by 1 · see citing works

Micronutrients and omega-3 PUFAs to promote healthy ageing: informing a physiology-based complementation strategy

Berger, M. M., Blaauw, R., D’Amelio, P., Ehrhart, N. P., Gombart, A. F., Gramlich, L. M., Kressig, R. W., & Calder, P. C. (2026) · GeroScience · doi:10.1007/s11357-026-02402-9 · Cited by 1 · see citing works

Precision Nutrition for Dementia: Exploring the Potential in Mitigating Dementia Progression

Jewell, T. J., Minehan, M., Williams, J., & D'Cunha, N. M. (2025) · Journal of dementia and Alzheimer's disease · doi:10.3390/jdad2030028 · Cited by 1 · see citing works

Microbiome Research in Greece: A Comprehensive Bibliometric Study

Stefanis, C., Tsigalou, C., Bezirtzoglou, I., Voidarou, C. C., & Stavropoulou, E. (2025) · Microorganisms · doi:10.3390/microorganisms13040725 · Cited by 1 · see citing works

Enhancing colorectal polyps management through multifactorial insights and psychological intervention

Hao, L., & Xue, J. (2024) · Clinical Nutrition · doi:10.1016/j.clnu.2024.06.028

Epigenetics of personalized medicine

Tollefsbol, T. O. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-23802-4.00007-7

Effect of meal replacements formula on lipid profiles: A systematic review and meta-analysis of randomized controlled trials

Qiao, Y., Xiao, X., Yu, H., Zhang, J., Sohouli, M. H., Fatahi, S., & Guimarães, N. S. (2024) · Prostaglandins & Other Lipid Mediators · doi:10.1016/j.prostaglandins.2024.106921

Systems Biology Study on Bioactive Compounds

Garse, S., Thakur, V., Devarajan, S., Bhori, M., Jobby, R., Ravichandran, V., & Tungare, K. (2025) · Springer eBooks · doi:10.1007/978-981-96-3663-1_16

Personalized Nutrition: Engineering Dietary Recommendations

K, M. E. (2025) · NEWPORT INTERNATIONAL JOURNAL OF BIOLOGICAL AND APPLIED SCIENCES · doi:10.59298/nijbas/2025/6.2.91600

Modulating the Gut Microbiome with Foods and Food Supplements

Francino, M. P. (2025) · The microbiomes of humans, animals, plants, and the environment · doi:10.1007/978-3-031-93902-0_1

1Introduction

Ijabadeniyi, O. A., Aruwa, C. E., & Ajayeoba, T. A. (2025) · De Gruyter eBooks · doi:10.1515/9783111441238-001

Nutrigenomics and Its Applications

Singh, Y., Sinha, S., Likhita, J., Arya, M., & Verma, V. (2025) · Springer eBooks · doi:10.1007/978-981-95-0285-1_14

Ajuba as a Potential Nutrition-Responsive Biomarker for the Prevention of Age-Related Sarcopenia

Han, Y., & Pack, S. P. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26167869

Nutraceuticals intervention in Alzheimer's disease: From farm to pharma

Chaithra, P. M., Rakshith, B. S., Logesh, S., Basalingappa, K. M., Gopenath, T. S., Chang, H., Perry, G. L., & Singh, S. K. (2025) · Journal of Alzheimer s Disease · doi:10.1177/13872877251385216

Understanding Nutritional Neuroscience

Ramli, M. D. C., Abidin, Z. Z., Hamdan, A. N. B. A., & Umbar, G. S. A. (2025) · Nutritional neurosciences · doi:10.1007/978-981-95-1414-4_2

In pursuit of personalized nutrigenomics—insights from dietary natural products and gut microbiome of ethnic tribes

Basu, S., Dhar, G. A., Das, T., Chatterji, N., Adak, A., Bhuiyan, S., & Ganguli, S. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-26761-1.00015-6

Ethical, legal, and social implications of nutrigenomics research

Alom, M., Bhat, N. A., Nongbet, A., & Mohapatra, S. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-26761-1.00100-9

Nutrigenomics and cardiovascular health

Kausar, T., Shamim, M. Z., Sarma, M. P., Panda, J., & Mishra, A. K. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-26761-1.00008-9

Big Data Analytics and Artificial Intelligence in Nutrigenomics

Loganathan, V., & Sinthiya, R. M. (2026) · Springer eBooks · doi:10.1007/978-3-032-12415-9_6

Advanced Technologies in Nutrigenomics Research

Prof. Tamilchudar, R., Arivuchudar, R., & Sendilkumar, B. (2026) · Springer eBooks · doi:10.1007/978-3-032-12415-9_5

Biological Factors Affecting Effective Dietary and Nutrition Strategies/Interventions

Prakash, D., Bisht, D., Manglik, I., & Verma, O. (2026) · Springer eBooks · doi:10.1007/978-981-95-4169-0_13 · Cited by 1 · see citing works

Pharmacogenomics and Toxicogenomics in Personalized Public Health: Integrating Genetic Insights, Emerging Technologies, and Global Regulatory Perspectives to Prevent Drug-induced Toxicity and Enhance Therapeutic Outcomes

Paul-Chima, U. O. (2026) · Current pharmacogenomics and personalized medicine (Online)/Current pharmacogenomics and personalized medicine · doi:10.2174/0118756921410152251114053446

Custom Sustenance Through Gut Biotics

Manna, D., Laishram, R., Das, D., & Dahuja, A. (2026) · IGI Global eBooks · doi:10.4018/979-8-3373-4382-2.ch003

Nutrigenomics and nutrigenetics in neurological disorders

Lazidou, I., Iordanis, G., Petrocheilou, P. E., Patrinos, G. P., & Lagoumintzis, G. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-33841-0.00029-4

The in vitro supplementation with Sambucus nigra extract promisingly impacts the human gut ecosystem in an individual-dependent way

Aheto, F., Granehäll, L., Nikoloudaki, O., Ben, M., Plattner, S., Gobbetti, M., Cagno, R. D., & Polo, A. (2026) · Food Bioscience · doi:10.1016/j.fbio.2026.108442

Integrative Approaches to Human and Animal Health (One Health Perspective)

Bakr, M. A., Youssef, I. M., & El-Hack, M. E. A. (2026) · Springer eBooks · doi:10.1007/978-3-032-15798-0_13

Multimodal Gut Microbiome based Personalized Nutrition Recommendation and Its Analysis using GNN

Ghadekar, P. P., Wadile, P., Patil, A., Lakde, V., Sagarkar, S., & Nimbolkar, A. (2025) · IEEE International Symposium on Sustainable Energy, Signal Processing and Cyber Security (iSSSC) · doi:10.1109/isssc66652.2025.11387854

Precision Nutrition Redefined: Integrative Molecular Frameworks for Personalized Dietary Interventions

Anih, D. C., Arowora, K. A., Boyi, R.-H. N., Ugwuoke, K. C., Muhammad, Z. I., Nafiu, S. B., Timothy, M., & Shadrach, P. (2025) · Asian Journal of Biological Sciences · doi:10.3923/ajbs.2025.865.884 · Cited by 2 · see citing works

Role of nutrigenomics and nutrigenetics in shaping personalized nutrition

Thakuria, T., & Sandal, A. (2026) · International Journal of Advanced Biochemistry Research · doi:10.33545/26174693.2026.v10.i2sd.7482

Challenges in integration of multiomics in gut microbiome

Verma, S., Verma, S., Abbas, M., & Mahdi, F. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-40483-2.00008-x

Recent trends in nutrigenomics and personalized diet: A mini review

Antony, J. (2025) · International Journal of Biology Sciences · doi:10.33545/26649926.2025.v7.i8c.465 · Cited by 2 · see citing works

Nutrigenomics Approaches to Control Metabolic Diseases and Challenges to Personalized Nutritional Intervention

Singh, C., Sharma, A., Bishnoi, M., Kondepudi, K. K., & Singh, R. P. (2020) · Springer eBooks · doi:10.1007/978-981-15-2874-3_12 · Cited by 1 · see citing works