Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 592

The DOI matches its Crossref record; 94 of the 94 references it cites were found in a registry or an index.

Revisiting a Key Innovation in Evolutionary Biology: Felsenstein’s “Phylogenies and the Comparative Method”

Open access
Huey, Raymond B., Garland, Theodore, Turelli, Michael·2019·The American Naturalist

Abstract

. This article forced comparative biologists to start thinking phylogenetically when conducting statistical analyses of correlated trait evolution rather than simply applying conventional statistical methods that ignore evolutionary relationships. It did so by introducing a novel analytical method (phylogenetically "independent contrasts") that required a phylogenetic topology with branch lengths and that assumed a Brownian motion model of trait evolution. Independent contrasts enabled comparative biologists to avoid the statistical dilemma of nonindependence of species values, arising from shared ancestry, but came at the cost of needing a detailed phylogeny and of accepting a specific model of character change. Nevertheless, this article not only revitalized comparative biology but even encouraged studies aimed at estimating phylogenies. Felsenstein's characteristically lucid and concise statement of the problem (illustrated with powerful graphics), coupled with an oncoming flood of new molecular data and techniques for estimating phylogenies, led Felsenstein's 1985 article to become the second most cited article in the history of this journal. Here we present a personal review of comparative biology before, during, and after Joe's article. For historical context, we append a perspective written by Joe himself that describes how his article evolved, unedited transcripts of reviews of his submitted manuscript, and a guide to some nontrivial calculations. These additional materials help emphasize that the process of science does not always occur gradually or predictably.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1086/703055

Cites

94 of 94 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Research works printed but not linked: 16

  1. Ackerly D. D., Comparative plant ecology and the role of phylogenetic information. Pages 391–414 in M
  2. Bartholomew G. A., Interspecific comparison as a tool for ecological physiologists. Pages 11–37 in M
  3. Brooks D. R., ecology, and behavior: a research program in comparative biology
  4. Darwin C., The origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. J
  5. Darwin C., The descent of man, and selection in relation to sex. J
  6. 10.2307/2407452 · doi:10.2307/2407452
  7. Feder M. E., The analysis of physiological diversity: the prospects for pattern documentation and general questions in ecological physiology. Pages 38–70 in M
  8. Felsenstein J., Statistical inference and the estimation of phylogenies. PhD diss
  9. 10.1086/283259 · doi:10.1086/283259
  10. Gorman G. C., The chromosomes of the Reptilia, a cytotaxonomic interpretation. Pages 349–424 in A
  11. Huey R. B., history, and the comparative method. Pages 76–98 in M
  12. 10.1146/annurev.es.24.110193.003103 · doi:10.1146/annurev.es.24.110193.003103 · Paper page
  13. Purvis A., 1995, Computer Applications in the Biosciences, 11, 247
  14. Salisbury E. J., The reproductive capacity of plants. G
  15. Shine R., The evolution of viviparity in reptiles: an ecological analysis. Pages 605–694 in C
  16. Systematics Agenda 0., Systematics Agenda 2000: charting the biosphere. Technical report

Cited by

See all 592

Metadata

Authors
Huey, R. B., Garland, T., & Turelli, M.
Venue
The American Naturalist
Published
2019-06
Volume
193
Issue
6
Pages
755-772
ISSN
  • 0003-0147 (ISSN-L)
  • 1537-5323
OpenAlex
W2933507162
Cited by
592
References
94
FWCI
36.53
Type
journal article
Language
en
Open access
green

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.