REFMAC 5 for the refinement of macromolecular crystal structures

Coot : model-building tools for molecular graphics

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

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Structures of the CDK12/CycK complex with AMP-PNP reveal a flexible C-terminal kinase extension important for ATP binding

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Structural insight into the arginine-binding specificity of CASTOR1 in amino acid-dependent mTORC1 signaling

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Computational stabilization of T cell receptors allows pairing with antibodies to form bispecifics

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Cooperativity between the orthosteric and allosteric ligand binding sites of RORγt

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Hydrolysis of clavulanate by Mycobacterium tuberculosis β-lactamase BlaC harboring a canonical SDN motif

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Dual Targeting Factors Are Required for LXG Toxin Export by the Bacterial Type VIIb Secretion System

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Interdigitated immunoglobulin arrays form the hyperstable surface layer of the extremophilic bacterium Deinococcus radiodurans

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Conformational transitions of the Spindly adaptor underlie its interaction with Dynein and Dynactin

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Energy penalties enhance flexible receptor docking in a model cavity

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Structural and functional analysis of EntV reveals a 12 amino acid fragment protective against fungal infections

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New Biological Insights from Better Structure Models

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Assessment of three-dimensional RNA structure prediction in CASP15

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Comparative Structural and Thermal Stability Studies of Cuc m 2.0101, Art v 4.0101 and Other Allergenic Profilins

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Proteolytic Activation of Human Cathepsin A

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Cryo-EM structure and B-factor refinement with ensemble representation

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Fragment-based drug discovery of triazole inhibitors to block PDEδ-RAS protein-protein interaction

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The Elastase-PK101 Structure: Mechanism of an Ultrasensitive Activity-based Probe Revealed

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De novo determination of mosquitocidal Cry11Aa and Cry11Ba structures from naturally-occurring nanocrystals

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Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4

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Bimodular architecture of bacterial effector SAP05 that drives ubiquitin-independent targeted protein degradation

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Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria

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Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake

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Shank3 oligomerization governs material properties of the postsynaptic density condensate and synaptic plasticity

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Emergence of a proton exchange-based isomerization and lactonization mechanism in the plant coumarin synthase COSY

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RhoGDIα Acetylation at K127 and K141 Affects Binding toward Nonprenylated RhoA

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Discovery of archaeal Fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins

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Natural Killer Cell Activation Receptor NKp30 Oligomerization Depends on Its N-Glycosylation

Skořepa, O., Pazicky, S., Kalousková, B., Bláha, J., Abreu, C., Ječmen, T., Rosůlek, M., Fish, A., Sedivy, A., Harlos, K., et al. (2020) · Cancers · doi:10.3390/cancers12071998 · Cited by 21

Systems-Wide Dissection of Organic Acid Assimilation in Pseudomonas aeruginosa Reveals a Novel Path To Underground Metabolism

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The structure of bradyzoite-specific enolase from Toxoplasma gondii reveals insights into its dual cytoplasmic and nuclear functions

Ruan, J., Mouveaux, T., Light, S. H., Minasov, G., Anderson, W. F., Tomavo, S., & Ngô, H. M. (2015) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s1399004714026479 · Cited by 20

Structural studies of Helix aspersa agglutinin complexed with GalNAc: A lectin that serves as a diagnostic tool

Pietrzyk, A. J., Bujacz, A., Mak, P., Potempa, B., & Niedziela, T. (2015) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2015.09.044 · Cited by 20

Crystal structure of SPSB2 in complex with a rational designed RGD-containing cyclic peptide inhibitor of SPSB2-iNOS interaction

You, T., Wang, Y., Li, K., Zhang, D., Wei, H., Luo, Y., Li, H., Lu, Y., Su, X., & Kuang, Z. (2017) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2017.05.122 · Cited by 19

Structural framework for the understanding spectroscopic and functional signatures of the cyanobacterial Orange Carotenoid Protein families

Sluchanko, N. N., Maksimov, E. G., Slonimskiy, Y. B., Varfolomeeva, L. A., Bukhanko, A. Y., Egorkin, N. A., Tsoraev, G. V., Khrenova, M. G., Ge, B., Qin, S., et al. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2023.127874 · Cited by 18

A subgroup of light-driven sodium pumps with an additional Schiff base counterion

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Structural analyses define the molecular basis of clusterin chaperone function

Yuste-Checa, P., Carvajal, A. I., Mi, C., Paatz, S., Hartl, F. U., & Bracher, A. (2025) · Nature Structural & Molecular Biology · doi:10.1038/s41594-025-01631-4 · Cited by 18

2.4 Å resolution crystal structure of human TRAP1NM, the Hsp90 paralog in the mitochondrial matrix

Sung, N., Lee, J., Kim, J.-H., Chang, C., Tsai, F. T. F., & Lee, S. (2016) · Acta Crystallographica Section D Structural Biology · doi:10.1107/s2059798316009906 · Cited by 15

T cell toxicity induced by tigecycline binding to the mitochondrial ribosome

Shao, Q., Khawaja, A., Nguyen, M. D., Singh, V., Zhang, J., Liu, Y., Nordin, J., Adori, M., Axel Innis, C., Castro Dopico, X., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-59388-9 · Cited by 16

Enzymatic Synthesis of l ‐Methionine Analogues and Application in a Methyltransferase Catalysed Alkylation Cascade**

Mohr, M. K. F., Saleem‐Batcha, R., Cornelissen, N. V., & Andexer, J. N. (2023) · Chemistry – A European Journal · doi:10.1002/chem.202301503 · Cited by 16

Computational design of highly signalling-active membrane receptors through solvent-mediated allosteric networks

Chen, K.-Y. M., Lai, J. K., Rudden, L. S. P., Wang, J., Russell, A. M., Conners, K., Rutter, M. E., Condon, B., Tung, F., Kodandapani, L., et al. (2025) · Nature Chemistry · doi:10.1038/s41557-024-01719-2 · Cited by 14

Elucidating polymorphs of crystal structures by intensity-based hierarchical clustering analysis of multiple diffraction data sets

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An expanded trove of fragment-bound structures for the allosteric enzyme PTP1B from computational reanalysis of large-scale crystallographic data

Mehlman, T., Ginn, H. M., & Keedy, D. A. (2024) · Structure · doi:10.1016/j.str.2024.05.010 · Cited by 14

Vibrio cholerae’s ToxRS bile sensing system

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Structural and functional analysis of hyper-thermostable ancestral L-amino acid oxidase that can convert Trp derivatives to D-forms by chemoenzymatic reaction

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An unbroken network of interactions connecting flagellin domains is required for motility in viscous environments

Nedeljković, M., Kreutzberger, M. A. B., Postel, S., Bonsor, D., Xing, Y., Jacob, N., Schuler, W. J., Egelman, E. H., & Sundberg, E. J. (2023) · PLOS Pathogens · doi:10.1371/journal.ppat.1010979 · Cited by 13

Harmonin homology domain-mediated interaction of RTEL1 helicase with RPA and DNA provides insights into its recruitment to DNA repair sites

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The Aspergillus nidulans velvet domain containing transcription factor VeA is shuttled from cytoplasm into nucleus during vegetative growth and stays there for sexual development, but has to return into cytoplasm for asexual development

Strohdiek, A., Köhler, A. M., Harting, R., Stupperich, H., Gerke, J., Bastakis, E., Neumann, P., Ahmed, Y. L., Ficner, R., & Braus, G. H. (2025) · PLOS Genetics · doi:10.1371/journal.pgen.1011687 · Cited by 12

Structural journey of an insecticidal protein against western corn rootworm

Marini, G., Poland, B., Leininger, C., Lukoyanova, N., Spielbauer, D., Barry, J. K., Altier, D., Lum, A., Scolaro, E., Ortega, C. P., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-39891-7 · Cited by 9

A four-point molecular handover during Okazaki maturation

Botto, M. M., Borsellini, A., & Lamers, M. H. (2023) · Nature Structural & Molecular Biology · doi:10.1038/s41594-023-01071-y · Cited by 9

Allosteric Regulation in the Ligand Binding Domain of Retinoic Acid Receptorγ

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Substrate Trapping in Polyketide Synthase Thioesterase Domains: Structural Basis for Macrolactone Formation

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The crystal and cryo-EM structures of PLCγ2 reveal dynamic interdomain recognitions in autoinhibition

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Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase

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Identification and characterization of substrate- and product-selective nylon hydrolases

Drufva, E. E., Cahill, J. F., Saint-Vincent, P. M. B., Williams, A. N., Bocharova, V., Capra, N., Meilleur, F., Carper, D. L., Bourgery, C., Miyazaki, K., et al. (2025) · Chem Catalysis · doi:10.1016/j.checat.2025.101418 · Cited by 7

DNA Wrapping by a tetrameric bacterial histone

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Independent horizontal transfer of genes encoding α/β-hydrolases with strigolactone binding and hydrolytic activities from bacteria to fungi and plants

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Substrate recruitment via eIF2γ enhances catalytic efficiency of a holophosphatase that terminates the integrated stress response

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CryoRhodopsins: A comprehensive characterization of a group of microbial rhodopsins from cold environments

Lamm, G. H. U., Marin, E., Alekseev, A., Schellbach, A. V., Stetsenko, A., Haro-Moreno, J. M., Bourenkov, G., Borshchevskiy, V., Asido, M., Agthe, M., et al. (2025) · Science Advances · doi:10.1126/sciadv.adv1015 · Cited by 7

Factors affecting macromolecule orientations in thin films formed in cryo-EM

Yadav, S., & Vinothkumar, K. R. (2024) · Acta Crystallographica Section D Structural Biology · doi:10.1107/s2059798324005229 · Cited by 7

Asymmetric horseshoe-like assembly of peroxisomal yeast oxalyl-CoA synthetase

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Transient dynamics of flavonoid metabolons tune chalcone synthase specificity

Imaizumi, R., Waki, T., Hattori, Y., Takeshita, K., Sumita, M., Kawaguchi, K., Kumeta, H., Umeda, K., Sato, K., Yanai, T., et al. (2026) · Nature Catalysis · doi:10.1038/s41929-026-01551-6 · Cited by 6

The complete λ-carrageenan depolymerization cascade from a marine Pseudoalteromonad revealed by structural analysis of the enzymes

Vickers, C. J., Hettle, A. G., Hobbs, J. K., Shapiro-Ward, S., Pluvinage, B., Medley, B. J., McGuire, B. E., Mihalynuk, L., Nitin, N., Zandberg, W. F., et al. (2025) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2025.110719 · Cited by 6

Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology

Piccoli, L., Park, Y.-J., Tortorici, M. A., Czudnochowski, N., Walls, A. C., Beltramello, M., Silacci-Fregni, C., Pinto, D., Rosen, L. E., Bowen, J. E., et al. (2020) · Cell · doi:10.1016/j.cell.2020.09.037 · Cited by 1,395

Sequence-assignment validation in protein crystal structure models with checkMySequence

Chojnowski, G. (2023) · Acta Crystallographica Section D Structural Biology · doi:10.1107/s2059798323003765 · Cited by 5

luxA Gene From Enhygromyxa salina Encodes a Functional Homodimeric Luciferase

Yudenko, A., Bazhenov, S. V., Aleksenko, V. A., Goncharov, I. M., Semenov, O., Remeeva, A., Nazarenko, V. V., Kuznetsova, E., Fomin, V. V., Konopleva, M. N., et al. (2024) · Proteins: Structure, Function, and Bioinformatics · doi:10.1002/prot.26739 · Cited by 5

Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB

Manthei, K. A., Munson, L. M., Nandakumar, J., & Simmons, L. A. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkae308 · Cited by 5

Interpreting the Evolutionary Echoes of a Protein Complex Essential for Inner-Ear Mechanosensation

Nisler, C. R., Narui, Y., Scheib, E., Choudhary, D., Bowman, J. D., Mandayam Bharathi, H., Lynch, V. J., & Sotomayor, M. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad057 · Cited by 4

Structural evolution of nitrogenase over 3 billion years

Cuevas Zuviría, B., Detemple, F., Amritkar, K., Garcia, A. K., Seefeldt, L., Einsle, O., & Kaçar, B. (2025) · eLife · doi:10.7554/elife.105613 · Cited by 4

Ton Motor Conformational Switch and Peptidoglycan Role in Bacterial Nutrient Uptake

Zinke, M., Lejeune, M., Mechaly, A., Bardiaux, B., Boneca, I. G., Delepelaire, P., & Izadi-Pruneyre, N. (2023) · doi:10.1101/2023.08.11.552980 · Cited by 3

Harnessing Photosynthetic ATP for Whole-Cell Biocatalysis in the Cyanobacterium Synechocystis

Loprete, G., Traverso, E., Vascon, F., Botteri, M., Robescu, M. S., Ubiali, D., Cendron, L., Morosinotto, T., & Bergantino, E. (2025) · ACS Sustainable Chemistry & Engineering · doi:10.1021/acssuschemeng.5c07236 · Cited by 2

A small molecule PTER-selective inhibitor reduces food intake and body weight

Fu, S., Wang, L., Li, V. L., Lyu, X., Wei, W., Shi, X., Deng, S., Barber, J. L., Tahir, U. A., Adams, C., et al. (2026) · Cell Chemical Biology · doi:10.1016/j.chembiol.2026.02.005 · Cited by 2

A small molecule PTER-selective inhibitor reduces food intake and body weight

Fu, S., Wang, L., Li, V. L., Lyu, X., Wei, W., Shi, X., Deng, S., Barber, J. L., Tahir, U. A., Adams, C., et al. (2026) · doi:10.64898/2026.01.26.701829 · Cited by 2

Disruption of CAD Oligomerization by Pathogenic Variants

Del Caño-Ochoa, F., Ramadane-Morchadi, L., Eixerés, L., Moreno-Morcillo, M., Fernández-Leiro, R., & Ramón-Maiques, S. (2024) · Journal of Molecular Biology · doi:10.1016/j.jmb.2024.168832 · Cited by 2

Sulfated mannan of diatoms selects host-specific microbiota in the sunlit ocean

Krull, J., Sidhu, C., Solanki, V., Bligh, M., Rößler, L., Singh, R. K., Huang, G., Robb, C. S., Teeling, H., Seeberger, P. H., et al. (2026) · Microbiome · doi:10.1186/s40168-026-02379-9 · Cited by 2

Crystal structure of FAD‐independent methylene‐tetrahydrofolate reductase from Mycobacterium hassiacum

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Analysis of the heterogenous structural states of the hexameric ATPase PilU of the type IV pili from Vibrio cholerae

Guo, Y., Shukla, S., Minasov, G., Inniss, N. L., Klose, T., Tokars, V. L., Mondragón, A., Otwinowski, Z., Borek, D., & Satchell, K. J. F. (2026) · Protein Science · doi:10.1002/pro.70609 · Cited by 1

Asymmetric horseshoe-like assembly of peroxisomal Yeast Oxalyl-CoA synthetase

Bürgi, J., Lill, P., Giannopoulou, E.-A., Jeffries, C. M., Chojnowski, G., Raunser, S., Gatsogiannis, C., & Wilmanns, M. (2022) · doi:10.1101/2022.08.30.505785 · Cited by 1

A viral SAVED protein with ring nuclease activity degrades the CRISPR second messenger cA4

(2025) · doi:10.1042/bcj20253271 · Cited by 1

Structure and catalytic mechanism of methylisocitrate lyase, a potential drug target against Coxiella burnetii

Stuart, W. S., Jenkins, C. H., Ireland, P. M., Isupov, M. N., Norville, I. H., & Harmer, N. J. (2025) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2025.108517 · Cited by 1

Cryo‐EM structures of multiple‐peptide resistance factor ( MprF ) from Pseudomonas aeruginosa

Jha, S., & Vinothkumar, K. R. (2026) · The FEBS Journal · doi:10.1111/febs.70519 · Cited by 1

The methyltransferase NmbA methylates the low-molecular weight thiol bacillithiol, and displays a specific structural architecture

Hammerstad, M., Steinvik, E., & Hersleth, H.-P. (2025) · Redox Biology · doi:10.1016/j.redox.2025.103937 · Cited by 1

Convergent evolution of distinct D-ribulose utilisation pathways in attaching and effacing pathogens

Cottam, C., Bowran, K., White, R. T., Baslé, A., Josts, I., & Connolly, J. P. R. (2025) · Nature Communications · doi:10.1038/s41467-025-62476-5