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The Genome Sequence of the SARS-Associated Coronavirus
Abstract
We sequenced the 29,751-base genome of the severe acute respiratory syndrome (SARS)âassociated coronavirus known as the Tor2 isolate. The genome sequence reveals that this coronavirus is only moderately related to other known coronaviruses, including two human coronaviruses, HCoV-OC43 and HCoV-229E. Phylogenetic analysis of the predicted viral proteins indicates that the virus does not closely resemble any of the three previously known groups of coronaviruses. The genome sequence will aid in the diagnosis of SARS virus infection in humans and potential animal hosts (using polymerase chain reaction and immunological tests), in the development of antivirals (including neutralizing antibodies), and in the identification of putative epitopes for vaccine development.
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Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Research works printed but not linked: 29
- C. A. Donnelly et al. Lancet ; published online 7 May 2003 (http://image.thelancet.com/extras/03art4453web.pdf).
- J. S. M. Peiris et al . Lancet ; published online 8 April 2003 (http://image.thelancet.com/extras/03art3477web.pdf).
- T. G. Ksiazeket al. N. Engl. J. Med.; published online 10 April 2003 (10.1056/NEJMoa030781). · DOI · Paper page
- 10.1016/S1286-4579(02)00053-9 · DOI
- B. N. Fields D. M. Knipe P. M. Howley D. E. Griffin Fields Virology (Lippincott Williams & Wilkins Philadelphia ed. 4 2001).
- M. M. C. Lai, D. Cavanagh, Adv. Virus Res.48, 1 (1997).
- 10.1007/978-1-4615-5331-1_26 · DOI
- D. L. Sawickiet al., J. Gen. Virol.82, 386 (2001).
- 10.1128/jvi.64.3.1050-1056.1990 · DOI
- 10.1128/jvi.68.12.8169-8179.1994 · DOI
- 10.1073/pnas.86.14.5626 · DOI
- S. H. Myint, in The Coronaviridae, S. G. Siddell, Ed. (Plenum, New York, 1995), pp. 389â401.
- L. Enjuaneset al., in Virus Taxonomy. Classification and Nomenclature of Viruses, M. H. V. van Regenmortel et al., Eds. (Academic Press, New York, 2000), pp. 835â849.
- S. M. Poutanenet al. N. Engl. J. Med.; published online 31 March 2003 (10.1056/NEJMoa030634). · DOI · Paper page
- 10.1126/science.1085952 · DOI · Paper page
- 10.1099/0022-1317-79-4-715 · DOI
- 10.1016/0042-6822(87)90312-6 · DOI
- 10.1006/viro.1996.0210 · DOI
- 10.1099/0022-1317-81-4-853 · DOI · Paper page
- 10.1093/protein/10.1.1 · DOI · Paper page
- E. L. Sonnhammer, G. von Heijne, A. Krogh, Proc. Int. Conf. Intell. Syst. Mol. Biol.6, 175 (1998).
- 10.1128/JVI.77.2.841-850.2003 · DOI
- 10.1073/pnas.85.8.2444 · DOI · Paper page
- 10.1093/nar/30.1.276 · DOI · Paper page
- K. Hofman, W. Stoffel, Biol. Chem. Hoppe-Seyler374, 166 (1993).
- 10.1093/nar/29.1.37 · DOI · Paper page
- 10.1093/bioinformatics/17.9.847 · DOI · Paper page
- 10.1128/JVI.76.22.11518-11529.2002 · DOI
- 10.1093/nar/22.22.4673 · DOI · Paper page
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Wan, Y., Shang, J., Graham, R., Baric, R. S., & Li, F. (2020) · Journal of Virology · doi:10.1128/jvi.00127-20 · Cited by 4,341
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Kuba, K., Imai, Y., Rao, S., Gao, H., Guo, F., Guan, B., Huan, Y., Yang, P., Zhang, Y., Deng, W., et al. (2005) · Nature Medicine · doi:10.1038/nm1267 · Cited by 3,445
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Li, F. (2016) · Annual Review of Virology · doi:10.1146/annurev-virology-110615-042301 · Cited by 2,740
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Gu, J., Gong, E., Zhang, B., Zheng, J., Gao, Z., Zhong, Y., Zou, W., Zhan, J., Wang, S., Xie, Z., et al. (2005) · The Journal of Experimental Medicine · doi:10.1084/jem.20050828 · Cited by 1,379
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Weiss, S. R., & Navas-Martin, S. (2005) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.69.4.635-664.2005 · Cited by 1,256
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Cheng, V. C. C., Lau, S. K. P., Woo, P. C. Y., & Yuen, K. Y. (2007) · Clinical Microbiology Reviews · doi:10.1128/cmr.00023-07 · Cited by 1,192
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Lei, X., Dong, X., Ma, R., Wang, W., Xiao, X., Tian, Z., Wang, C., Wang, Y., Li, L., Ren, L., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-17665-9 · Cited by 980
Hofmann, H., Pyrc, K., van der Hoek, L., Geier, M., Berkhout, B., & Pöhlmann, S. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0409465102 · Cited by 824
Network theory and SARS: predicting outbreak diversity
Meyers, L. A., Pourbohloul, B., Newman, M. E. J., Skowronski, D. M., & Brunham, R. C. (2005) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2004.07.026 · Cited by 705
Self-citationMoldofsky, H., & Patcai, J. (2011) · BMC Neurology · doi:10.1186/1471-2377-11-37 · Cited by 604
“Subsequently a novel coronavirus was identified as the cause of the acute outbreak [ 5-7 ].”
BackgroundEpidemiology, transmission dynamics and control of SARS: the 2002–2003 epidemic
Anderson, R. M., Fraser, C., Ghani, A. C., Donnelly, C. A., Riley, S., Ferguson, N. M., Leung, G. M., Lam, T. H., & Hedley, A. J. (2004) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.2004.1490 · Cited by 509
ACE2: from vasopeptidase to SARS virus receptor
Turner, A. J., Hiscox, J. A., & Hooper, N. M. (2004) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2004.04.001 · Cited by 517
T cell-mediated immune response to respiratory coronaviruses
Channappanavar, R., Zhao, J., & Perlman, S. (2014) · Immunologic Research · doi:10.1007/s12026-014-8534-z · Cited by 512
Wang, L.-F., Shi, Z., Zhang, S., Field, H., Daszak, P., & Eaton, B. (2006) · Emerging Infectious Diseases · doi:10.3201/eid1212.060401 · Cited by 471
A review of studies on animal reservoirs of the SARS coronavirus
Shi, Z., & Hu, Z. (2008) · Virus Research · doi:10.1016/j.virusres.2007.03.012 · Cited by 400
Devaraj, S. G., Wang, N., Chen, Z., Chen, Z., Tseng, M., Barretto, N., Lin, R., Peters, C. J., Tseng, C.-T. K., Baker, S. C., et al. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m704870200 · Cited by 411
Bat origin of human coronaviruses
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Moderate mutation rate in the SARS coronavirus genome and its implications
Zhao, Z., Li, H., Wu, X., Zhong, Y., Zhang, K., Zhang, Y.-P., Boerwinkle, E., & Fu, Y.-X. (2004) · BMC Evolutionary Biology · doi:10.1186/1471-2148-4-21 · Cited by 286
Martin, J. E., Louder, M. K., Holman, L. A., Gordon, I. J., Enama, M. E., Larkin, B. D., Andrews, C. A., Vogel, L., Koup, R. A., Roederer, M., et al. (2008) · Vaccine · doi:10.1016/j.vaccine.2008.09.026 · Cited by 267
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To, K., & Lo, A. W. (2004) · The Journal of Pathology · doi:10.1002/path.1597 · Cited by 226
Zhang, K., Zheludev, I. N., Hagey, R. J., Haslecker, R., Hou, Y. J., Kretsch, R., Pintilie, G. D., Rangan, R., Kladwang, W., Li, S., et al. (2021) · Nature Structural & Molecular Biology · doi:10.1038/s41594-021-00653-y · Cited by 189
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Chen, I.-Y., Chang, S. C., Wu, H.-Y., Yu, T.-C., Wei, W.-C., Lin, S., Chien, C.-L., & Chang, M.-F. (2010) · Journal of Virology · doi:10.1128/jvi.02560-09 · Cited by 141
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Metadata
- Authors
- Marra, M. A., Jones, S. J. M., Astell, C. R., Holt, R. A., Brooks-Wilson, A., Butterfield, Y. S. N., Khattra, J., Asano, J. K., Barber, S. A., Chan, S. Y., Cloutier, A., Coughlin, S. M., Freeman, D., Girn, N., Griffith, O. L., Leach, S. R., Mayo, M., McDonald, H., Montgomery, S. B., Pandoh, P. K., Petrescu, A. S., Robertson, A. G., Schein, J. E., Siddiqui, A., Smailus, D. E., Stott, J. M., Yang, G. S., Plummer, F., Andonov, A., Artsob, H., Bastien, N., Bernard, K., Booth, T. F., Bowness, D., Czub, M., Drebot, M., Fernando, L., Flick, R., Garbutt, M., Gray, M., Grolla, A., Jones, S., Feldmann, H., Meyers, A., Kabani, A., Li, Y., Normand, S., Stroher, U., Tipples, G. A., Tyler, S., Vogrig, R., Ward, D., Watson, B., Brunham, R. C., Krajden, M., Petric, M., Skowronski, D. M., Upton, C., & Roper, R. L.
- Venue
- Science
- Published
- 2003-05-30
- Volume
- 300
- Issue
- 5624
- Pages
- 1399-1404
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2169198329
- Cited by
- 2,026
- References
- 1
- FWCI
- 175.73
- Type
- journal article
- Language
- en
- Open access
- closed
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