Rescue of Impaired Long-Term Facilitation at Sensorimotor Synapses of Aplysia following siRNA Knockdown of CREB1
Open accessAbstract
Memory impairment is often associated with disrupted regulation of gene induction. For example, deficits in cAMP response element-binding protein (CREB) binding protein (CBP; an essential cofactor for activation of transcription by CREB) impair long-term synaptic plasticity and memory. Previously, we showed that small interfering RNA (siRNA)-induced knockdown of CBP in individual sensory neurons significantly reduced levels of CBP and impaired 5-HT-induced long-term facilitation (LTF) in sensorimotor cocultures from Aplysia. Moreover, computational simulations of the biochemical cascades underlying LTF successfully predicted training protocols that restored LTF following CBP knockdown. We examined whether simulations could also predict a training protocol that restores LTF impaired by siRNA-induced knockdown of the transcription factor CREB1. Simulations based on a previously described model predicted rescue protocols that were specific to CREB1 knockdown. Empirical studies demonstrated that one of these rescue protocols partially restored impaired LTF. In addition, the effectiveness of the rescue protocol was enhanced by pretreatment with rolipram, a selective cAMP phosphodiesterase inhibitor. These results provide further evidence that computational methods can help rescue disruptions in signaling cascades underlying memory formation. Moreover, the study demonstrates that the effectiveness of computationally designed training protocols can be enhanced with complementary pharmacological approaches.
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A similar predicted rescue protocol of irregularly spaced intervals rescued a deficit in LTF that was produced by siRNA knockdown of CREB1.
“A similar predicted rescue protocol of irregularly spaced intervals rescued a deficit in LTF that was produced by siRNA knockdown of CREB1 (REF. 97).”
From The right time to learn: Mechanisms and optimization of spaced learning (2016) · cites this paper as [97]
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Cites
Bourtchuladze, R., Frenguelli, B., Blendy, J., Cioffi, D., Schutz, G., & Silva, A. J. (1994) · Cell · doi:10.1016/0092-8674(94)90400-6 · Cited by 1,800 · see citing works
Multi-target therapeutics: when the whole is greater than the sum of the parts
Zimmermann, G. R., Lehár, J., & Keith, C. T. (2007) · Drug Discovery Today · doi:10.1016/j.drudis.2006.11.008 · Cited by 1,105 · see citing works
(1953) · PubMed · Cited by 942 · see citing works
Chromatin Acetylation, Memory, and LTP Are Impaired in CBP+/− Mice
Alarcón, J. M., Malleret, G., Touzani, K., Vronskaya, S., Ishii, S., Kandel, E. R., & Barco, A. (2004) · Neuron · doi:10.1016/j.neuron.2004.05.021 · Cited by 892 · see citing works
CBP Histone Acetyltransferase Activity Is a Critical Component of Memory Consolidation
Korzus, E., Rosenfeld, M. G., & Mayford, M. (2004) · Neuron · doi:10.1016/j.neuron.2004.06.002 · Cited by 823 · see citing works
Montarolo, P. G., Goelet, P., Castellucci, V. F., Morgan, J., Kandel, E. R., & Schacher, S. (1986) · Science · doi:10.1126/science.3775383 · Cited by 769 · see citing works
Dash, P. K., Hochner, B., & Kandel, E. R. (1990) · Nature · doi:10.1038/345718a0 · Cited by 747 · see citing works
Bartsch, D., Ghirardi, M., Skehel, P. A., Karl, K. A., Herder, S. P., Chen, M., Bailey, C. H., & Kandel, E. R. (1995) · Cell · doi:10.1016/0092-8674(95)90213-9 · Cited by 572 · see citing works
A Role for Neuronal piRNAs in the Epigenetic Control of Memory-Related Synaptic Plasticity
Rajasethupathy, P., Antonov, I., Sheridan, R., Frey, S., Sander, C., Tuschl, T., & Kandel, E. R. (2012) · Cell · doi:10.1016/j.cell.2012.02.057 · Cited by 566 · see citing works
Martin, K. C., Michael, D., Rose, J. C., Barad, M., Casadio, A., Zhu, H., & Kandel, E. R. (1997) · Neuron · doi:10.1016/s0896-6273(00)80330-x · Cited by 545 · see citing works
C/EBP is an immediate-early gene required for the consolidation of long-term facilitation in Aplysia
Alberini, C. M., Ghirardl, M., Metz, R., & Kandel, E. R. (1994) · Cell · doi:10.1016/0092-8674(94)90386-7 · Cited by 523 · see citing works
Guan, Z., Giustetto, M., Lomvardas, S., Kim, J.-H., Miniaci, M. C., Schwartz, J. H., Thanos, D., & Kandel, E. R. (2002) · Cell · doi:10.1016/s0092-8674(02)01074-7 · Cited by 497 · see citing works
Pittenger, C., Huang, Y. Y., Paletzki, R. F., Bourtchouladze, R., Scanlin, H., Vronskaya, S., & Kandel, E. R. (2002) · Neuron · doi:10.1016/s0896-6273(02)00684-0 · Cited by 464 · see citing works
Josselyn, S. A., Shi, C., Carlezon, W. A., Neve, R. L., Nestler, E. J., & Davis, M. (2001) · Journal of Neuroscience · doi:10.1523/jneurosci.21-07-02404.2001 · Cited by 451 · see citing works
Gong, B., Vitolo, O. V., Trinchese, F., Liu, S., Shelanski, M., & Arancio, O. (2004) · Journal of Clinical Investigation · doi:10.1172/jci22831 · Cited by 442 · see citing works
Barad, M., Bourtchouladze, R., Winder, D. G., Golan, H. M., & Kandel, E. R. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.15020 · Cited by 431 · see citing works
Bartsch, D., Casadio, A., Karl, K. A., Serodio, P., & Kandel, E. R. (1998) · Cell · doi:10.1016/s0092-8674(00)81752-3 · Cited by 373 · see citing works
Wood, M. A., Kaplan, M. P., Park, A., Blanchard, E. J., Oliveira, A. M. M., Lombardi, T. L., & Abel, T. G. (2005) · Learning & Memory · doi:10.1101/lm.86605 · Cited by 333 · see citing works
Bourtchouladze, R., Lidge, R., Catapano, R., Stanley, J., Gossweiler, S., Romashko, D., Scott, R., & Tully, T. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1834280100 · Cited by 313 · see citing works
The role of CREB signaling in Alzheimer’s disease and other cognitive disorders
Saura, C. A., & Valero, J. (2011) · revneuro · doi:10.1515/rns.2011.018 · Cited by 312 · see citing works
Barrett, R. M., Malvaez, M., Kramar, E., Matheos, D. P., Arrizon, A., Cabrera, S. M., Lynch, G., Greene, R. W., & Wood, M. A. (2011) · Neuropsychopharmacology · doi:10.1038/npp.2011.61 · Cited by 243 · see citing works
Rubinstein–Taybi syndrome: clinical and molecular overview
Roelfsema, J. H., & Peters, D. J. M. (2007) · Expert Reviews in Molecular Medicine · doi:10.1017/s1462399407000415 · Cited by 217 · see citing works
Chain, D. G., Casadio, A., Schacher, S., Hegde, A. N., Valbrun, M., Yamamoto, N., Goldberg, A. L., Bartsch, D., Kandel, E. R., & Schwartz, J. H. (1999) · Neuron · doi:10.1016/s0896-6273(00)80686-8 · Cited by 186 · see citing works
Osborne, L. R., & Mervis, C. Β. (2007) · Expert Reviews in Molecular Medicine · doi:10.1017/s146239940700035x · Cited by 185 · see citing works
Ras and Rap Signaling in Synaptic Plasticity and Mental Disorders
Stornetta, R. L., & Zhu, J. (2010) · The Neuroscientist · doi:10.1177/1073858410365562 · Cited by 159 · see citing works
Synergistic and Antagonistic Drug Combinations Depend on Network Topology
Yin, N., Ma, W., Pei, J., Ouyang, Q., Tang, C., & Lai, L. (2014) · PLoS ONE · doi:10.1371/journal.pone.0093960 · Cited by 139 · see citing works
MacKenzie, S. J., & Houslay, M. D. (2000) · Biochemical Journal · doi:10.1042/0264-6021:3470571 · Cited by 139 · see citing works
Protein Kinase M Maintains Long-Term Sensitization and Long-Term Facilitation inAplysia
Cai, D., Pearce, K. C., Chen, S., & Glanzman, D. L. (2011) · Journal of Neuroscience · doi:10.1523/jneurosci.4744-10.2011 · Cited by 131 · see citing works
Müller, U., & Carew, T. J. (1998) · Neuron · doi:10.1016/s0896-6273(00)80660-1 · Cited by 128 · see citing works
Sharma, S. K., Sherff, C. M., Shobe, J., Bagnall, M. W., Sutton, M. A., & Carew, T. J. (2003) · The Journal of Neuroscience · doi:10.1523/jneurosci.23-09-03899.2003 · Cited by 125 · see citing works
p38 MAP Kinase Mediates Both Short-Term and Long-Term Synaptic Depression inAplysia
Guan, Z., Kim, J., Lomvardas, S., Holick, K. A., Xu, S., Kandel, E. R., & Schwartz, J. H. (2003) · Journal of Neuroscience · doi:10.1523/jneurosci.23-19-07317.2003 · Cited by 91 · see citing works
The genetics of mental retardation
Raymond, F. L., & Tarpey, P. S. (2006) · Human Molecular Genetics · doi:10.1093/hmg/ddl189 · Cited by 88 · see citing works
Restivo, L., Tafi, E., Ammassari‐Teule, M., et al. (2008) · Hippocampus · doi:10.1002/hipo.20527 · Cited by 80 · see citing works
Computational design of enhanced learning protocols
Zhang, Y., Liu, R.-Y., Heberton, G. A., Smolen, P., Baxter, D. A., Cleary, L. J., & Byrne, J. H. (2012) · Nature Neuroscience · doi:10.1038/nn.2990 · Cited by 80 · see citing works
Self-citationcAMP-response Elements in Aplysia creb1, creb2, and Ap-uch Promoters
Mohamed, H. A., Yao, W., Fioravante, D., Smolen, P. D., & Byrne, J. H. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m502541200 · Cited by 73 · see citing works
Self-citationSong, H., Smolen, P. D., Av-Ron, E., Baxter, D. A., & Byrne, J. H. (2007) · Biophysical Journal · doi:10.1529/biophysj.106.096891 · Cited by 72 · see citing works
Self-citationYamamoto, N., Hegde, A. N., Chain, D. G., & Schwartz, J. H. (1999) · Journal of Neurochemistry · doi:10.1046/j.1471-4159.1999.0732415.x · Cited by 64 · see citing works
Liu, R.-Y., Cleary, L. J., & Byrne, J. H. (2011) · The Journal of Neuroscience · doi:10.1523/jneurosci.5071-10.2011 · Cited by 60 · see citing works
Self-citationPeters, M., Bletsch, M., Catapano, R., Zhang, X., Tully, T., & Bourtchouladze, R. (2009) · Genes Brain & Behavior · doi:10.1111/j.1601-183x.2009.00474.x · Cited by 56 · see citing works
Kawahara, K., Suenobu, M., Ohtsuka, H., Kuniyasu, A., Sugimoto, Y., Nakagomi, M., Fukasawa, H., Shudo, K., & Nakayama, H. (2014) · Journal of Alzheimer's Disease · doi:10.3233/jad-132720 · Cited by 51 · see citing works
Fragile X syndrome: From targets to treatments
Wijetunge, L. S., Chattarji, S., Wyllie, D. J. A., & Kind, P. C. (2012) · Neuropharmacology · doi:10.1016/j.neuropharm.2012.11.028 · Cited by 49 · see citing works
Combination therapy in a transgenic model of Alzheimer's disease
Aytan, N., Choi, J., Carreras, I., Kowall, N. W., Jenkins, B. G., & Dedeoglu, A. (2013) · Experimental Neurology · doi:10.1016/j.expneurol.2013.10.001 · Cited by 36 · see citing works
Pattern and predictability in memory formation: From molecular mechanisms to clinical relevance
Philips, G. T., Kopec, A. M., & Carew, T. J. (2013) · Neurobiology of Learning and Memory · doi:10.1016/j.nlm.2013.05.003 · Cited by 33 · see citing works
Deficit in Long-Term Synaptic Plasticity Is Rescued by a Computationally Predicted Stimulus Protocol
Liu, R.-Y., Zhang, Y., Baxter, D. A., Smolen, P., Cleary, L. J., & Byrne, J. H. (2013) · The Journal of Neuroscience · doi:10.1523/jneurosci.0643-13.2013 · Cited by 29 · see citing works
Self-citationPhosphodiesterase Inhibition Rescues Chronic Cognitive Deficits Induced by Traumatic Brain Injury
Titus, D. J., Sakurai, A., Kang, Y., Furones, C., Jergova, S., Santos, R., Sick, T., & Atkins, C. M. (2013) · Journal of Neuroscience · doi:10.1523/jneurosci.5133-12.2013 · Cited by 29 · see citing works
Park, H., Lee, J., Lee, C., Kim, M., Chang, D., Kim, H., Lee, S., Lee, Y., & Kaang, B. (2005) · Journal of Neuroscience · doi:10.1523/jneurosci.1989-05.2005 · Cited by 27 · see citing works
More evidence on proneurocognitive effects of add-on mirtazapine in schizophrenia
Stenberg, J., Terevnikov, V., Joffe, M., Tiihonen, J., Tchoukhine, E., Burkin, M. M., & Joffe, G. (2011) · Progress in Neuro-Psychopharmacology and Biological Psychiatry · doi:10.1016/j.pnpbp.2011.03.004 · Cited by 24 · see citing works
Serotonin- and training-induced dynamic regulation of CREB2 in <i>Aplysia</i>
Liu, R.-Y., Shah, S., Cleary, L. J., & Byrne, J. H. (2011) · Learning & Memory · doi:10.1101/lm.2112111 · Cited by 24 · see citing works
Self-citationComputational Analyses of Synergism in Small Molecular Network Motifs
Zhang, Y., Smolen, P. D., Baxter, D. A., & Byrne, J. H. (2014) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003524 · Cited by 20 · see citing works
Self-citationShifu, X., Haibo, X., Li, G., et al. (2012) · Australian & New Zealand Journal of Psychiatry · doi:10.1177/0004867411433213 · Cited by 14 · see citing works
A simple test for synergy for a small number of combinations
Novick, S. J. (2013) · Statistics in Medicine · doi:10.1002/sim.5905 · Cited by 11 · see citing works
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The right time to learn: Mechanisms and optimization of spaced learning
Smolen, P., Zhang, Y., & Byrne, J. H. (2016) · Nature Reviews Neuroscience · doi:10.1038/nrn.2015.18 · Cited by 326 · see citing works
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- Authors
- Zhou, L., Zhang, Y., Liu, R.-Y., Smolen, P., Cleary, L. J., & Byrne, J. H.
- Affiliations
- The University of Texas Health Science Center at Houston (US)
- Venue
- The Journal of Neuroscience
- Publisher
- Society for Neuroscience
- Published
- 2015-01-28
- Volume
- 35
- Issue
- 4
- Pages
- 1617-1626
- ISSN
- 0270-6474 (ISSN-L)
- 1529-2401
- PMC
- PMC4308605
- OpenAlex
- W2047936355
- Cited by
- 14
- References
- 51
- Citations by year
- 2024: 2 · 2023: 1 · 2022: 4 · 2021: 2 · 2020: 1 · 2019: 1 · 2017: 2 · 2016: 1
- FWCI
- 0.60
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Neuroscience (publishedVersion, cc-by-nc-sa)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (NS019895)
- National Institute of Neurological Disorders and Stroke (R01NS019895, R01NS073974)
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Memory and Neural Mechanisms
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neurobiology and Insect Physiology Research
- Keywords
- long-term facilitation, CREB1, CREB-binding protein, CBP, Aplysia, siRNA knockdown, memory impairment, serotonin, rolipram, cAMP phosphodiesterase inhibition, synaptic plasticity, memory formation
- MeSH terms
- Animals, Aplysia, Biophysics, Computer Simulation, Electric Stimulation, Models, Neurological, Motor Neurons, Sensory Receptor Cells, Serotonin, Synapses, Time Factors, Long-Term Potentiation, Cyclic AMP-Dependent Protein Kinases, Coculture Techniques, Excitatory Postsynaptic Potentials, RNA, Small Interfering, CREB-Binding Protein
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