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The deep population history of northern East Asia from the Late Pleistocene to the Holocene

Mao, Xiaowei, Zhang, Hucai, Qiao, Shiyu, Liu, Yichen, Chang, Fengqin, Xie, Ping, Zhang, Ming, Wang, Tianyi, Li, Mian, Cao, Peng, Yang, Ruowei, Liu, Feng, Dai, Qingyan, Feng, Xiaotian, Ping, Wanjing, Lei, Chuzhao, Olsen, John W., Bennett, E. Andrew, Fu, Qiaomei·2021·Cell

Abstract

Northern East Asia was inhabited by modern humans as early as 40 thousand years ago (ka), as demonstrated by the Tianyuan individual. Using genome-wide data obtained from 25 individuals dated to 33.6-3.4 ka from the Amur region, we show that Tianyuan-related ancestry was widespread in northern East Asia before the Last Glacial Maximum (LGM). At the close of the LGM stadial, the earliest northern East Asian appeared in the Amur region, and this population is basal to ancient northern East Asians. Human populations in the Amur region have maintained genetic continuity from 14 ka, and these early inhabitants represent the closest East Asian source known for Ancient Paleo-Siberians. We also observed that EDAR V370A was likely to have been elevated to high frequency after the LGM, suggesting the possible timing for its selection. This study provides a deep look into the population dynamics of northern East Asia.

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  • The Yana River occupants apparently did not develop any genetic adaptations to vitamin D deficiency related to low UV radiation during the winter months.

    “They apparently did not develop any genetic adaptations to vitamin D deficiency related to low UV radiation during the winter months [70,79].”

    From Beringia and the peopling of the Western Hemisphere (2023) · cites this paper as [70]

  • The same East Asian lineage is present in the Amur River Basin at 33 ka and 19 ka.

    “The same lineage is present in the Amur River Basin at 33 ka and 19 ka (i.e. before and at the end of the LGM) [70].”

    From Beringia and the peopling of the Western Hemisphere (2023) · cites this paper as [70]

  • They also include a variant of EDAR V370A, which was under strong positive selection pressure during the LGM and appears to be an adaptation to vitamin D deficiency (due to low UV radiation) related to nursing infants.

    “They also include a variant of EDAR V370A, which was under strong positive selection pressure during the LGM and appears to be an adaptation to vitamin D deficiency (due to low UV radiation) related to nursing infants [70,79].”

    From Beringia and the peopling of the Western Hemisphere (2023) · cites this paper as [70]

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Research works printed but not linked: 66

  1. Alexander, 2009, Fast model-based estimation of ancestry in unrelated individuals, Genome Res., 19, 1655, 10.1101/gr.094052.109 · DOI · Paper page
  2. Andrews, 1999, Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA, Nat. Genet., 23, 147, 10.1038/13779 · DOI · Paper page
  3. Baum, 1989, PHYLIP: Phylogeny Inference Package. Version 3.2. Joel Felsenstein, Q. Rev. Biol., 64, 539, 10.1086/416571 · DOI
  4. Clark, 2009, The last glacial maximum, Science, 325, 710, 10.1126/science.1172873 · DOI · Paper page
  5. 2021, Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021, Nucleic Acids Res., 49, D18, 10.1093/nar/gkaa1022 · DOI
  6. de Barros Damgaard, 2018, The first horse herders and the impact of early Bronze Age steppe expansions into Asia, Science, 360, eaar7711, 10.1126/science.aar7711 · DOI
  7. Devièse, 2019, Compound-specific radiocarbon dating and mitochondrial DNA analysis of the Pleistocene hominin from Salkhit Mongolia, Nat. Commun., 10, 274, 10.1038/s41467-018-08018-8 · DOI
  8. Diamond, 2003, Farmers and their languages: the first expansions, Science, 300, 597, 10.1126/science.1078208 · DOI · Paper page
  9. Ding, 2020, Ancient mitogenomes show plateau populations from last 5200 years partially contributed to present-day Tibetans, Proc. Biol. Sci., 287, 20192968
  10. Fujimoto, 2008, A replication study confirmed the EDAR gene to be a major contributor to population differentiation regarding head hair thickness in Asia, Hum. Genet., 124, 179, 10.1007/s00439-008-0537-1 · DOI
  11. Gansauge, 2013, Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA, Nat. Protoc., 8, 737, 10.1038/nprot.2013.038 · DOI · Paper page
  12. Harney, 2021, Assessing the performance of qpAdm: a statistical tool for studying population admixture, Genetics, 217, iyaa045, 10.1093/genetics/iyaa045 · DOI
  13. Hayden, 2011, A century of feasting studies, Annu. Rev. Anthropol., 40, 433, 10.1146/annurev-anthro-081309-145740 · DOI
  14. 2019, The excavation of Zone III at the Xiaonanshan Site in 2015, Raohe County, Heilongjiang, Chinese Archaeology, 20, 87
  15. Hlusko, 2018, Environmental selection during the last ice age on the mother-to-infant transmission of vitamin D and fatty acids through breast milk, Proc. Natl. Acad. Sci. USA, 115, E4426, 10.1073/pnas.1711788115 · DOI · Paper page
  16. Jeong, 2016, Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc, Proc. Natl. Acad. Sci. USA, 113, 7485, 10.1073/pnas.1520844113 · DOI
  17. Jeong, 2019, The genetic history of admixture across inner Eurasia, Nat. Ecol. Evol., 3, 966, 10.1038/s41559-019-0878-2 · DOI
  18. 1996, Neolithic burial in Xiaonanshan, Raohe County, Heilongjiang, Kaogu, 1996, 1
  19. Kamberov, 2013, Modeling recent human evolution in mice by expression of a selected EDAR variant, Cell, 152, 691, 10.1016/j.cell.2013.01.016 · DOI
  20. Kılınç, 2021, Human population dynamics and Yersinia pestis in ancient northeast Asia, Sci. Adv., 7, eabc4587, 10.1126/sciadv.abc4587 · DOI · Paper page
  21. Kunikita, 2017, Radiocarbon dating and dietary reconstruction of the Early Neolithic Houtaomuga and Shuangta sites in the Song-Nen Plain, Northeast China, Quat. Int., 441, 62, 10.1016/j.quaint.2017.01.031 · DOI
  22. Li, 2009, Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, 25, 1754, 10.1093/bioinformatics/btp324 · DOI · Paper page
  23. Li, 2015, Spatiotemporal variability of extreme precipitation in north and south of the Qinling-Huaihe region and influencing factors during 1960–2013, Prog. Geogr., 34, 354
  24. Lindo, 2018, The genetic prehistory of the Andean highlands 7000 years BP though European contact, Sci. Adv., 4, eaau4921, 10.1126/sciadv.aau4921 · DOI
  25. Lipatov, 2015, Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data, bioRxiv, 023374
  26. Lipson, 2020, Applying f4 -statistics and admixture graphs: Theory and examples, Mol. Ecol. Resour., 20, 1658, 10.1111/1755-0998.13230 · DOI
  27. Lipson, 2018, Ancient genomes document multiple waves of migration in Southeast Asian prehistory, Science, 361, 92, 10.1126/science.aat3188 · DOI
  28. Llorente, 2015, Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent, Science, 350, 820, 10.1126/science.aad2879 · DOI
  29. Lu, 2016, Ancestral Origins and Genetic History of Tibetan Highlanders, Am. J. Hum. Genet., 99, 580, 10.1016/j.ajhg.2016.07.002 · DOI
  30. Massilani, 2020, Denisovan ancestry and population history of early East Asians, Science, 370, 579, 10.1126/science.abc1166 · DOI · Paper page
  31. Meyer, 2010, Illumina sequencing library preparation for highly multiplexed target capture and sequencing, Cold Spring Harb. Protoc., 2010, 10.1101/pdb.prot5448 · DOI
  32. Mingram, 2018, Millennial-scale East Asian monsoon variability of the last glacial deduced from annually laminated sediments from Lake Sihailongwan, NE China, Quat. Sci. Rev., 201, 57, 10.1016/j.quascirev.2018.09.023 · DOI
  33. Moreno-Mayar, 2018, Early human dispersals within the Americas, Science, 362, eaav2621, 10.1126/science.aav2621 · DOI
  34. Nakatsuka, 2017, The promise of discovering population-specific disease-associated genes in South Asia, Nat. Genet., 49, 1403, 10.1038/ng.3917 · DOI
  35. Narasimhan, 2019, The formation of human populations in South and Central Asia, Science, 365, eaat7487, 10.1126/science.aat7487 · DOI
  36. Ning, 2020, Ancient genomes from northern China suggest links between subsistence changes and human migration, Nat. Commun., 11, 2700, 10.1038/s41467-020-16557-2 · DOI
  37. Olalde, 2014, Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European, Nature, 507, 225, 10.1038/nature12960 · DOI · Paper page
  38. Pearson, 2005, The social context of early pottery in the Lingnan region of south China, Antiquity, 79, 819, 10.1017/S0003598X00114954 · DOI
  39. Peter, 2020, 100,000 years of gene flow between Neandertals and Denisovans in the Altai mountains, bioRxiv
  40. Peter, 2012, Distinguishing between selective sweeps from standing variation and from a de novo mutation, PLoS Genet., 8, e1003011, 10.1371/journal.pgen.1003011 · DOI · Paper page
  41. Pitulko, 2012, The extinction of the woolly mammoth and the archaeological record in Northeastern Asia, World Archaeol., 44, 21, 10.1080/00438243.2012.647574 · DOI
  42. Prüfer, 2017, A high-coverage Neandertal genome from Vindija Cave in Croatia, Science, 358, 655, 10.1126/science.aao1887 · DOI · Paper page
  43. Qin, 2015, Denisovan Ancestry in East Eurasian and Native American Populations, Mol. Biol. Evol., 32, 2665, 10.1093/molbev/msv141 · DOI
  44. Ramsey, 2013, Recent and planned developments of the program OxCal, Radiocarbon, 55, 720, 10.1017/S0033822200057878 · DOI
  45. Reich, 2011, Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania, Am. J. Hum. Genet., 89, 516, 10.1016/j.ajhg.2011.09.005 · DOI · Paper page
  46. Renaud, 2014, leeHom: adaptor trimming and merging for Illumina sequencing reads, Nucleic Acids Res., 42, e141, 10.1093/nar/gku699 · DOI
  47. Ringbauer, 2020, Human Parental Relatedness through Time - Detecting Runs of Homozygosity in Ancient DNA, bioRxiv
  48. Rybin, 2016, The impact of the LGM on the development of the Upper Paleolithic in Mongolia, Quat. Int., 425, 69, 10.1016/j.quaint.2016.05.001 · DOI
  49. Sato, 2017, Human behavioral responses to environmental condition and the emergence of the world’s oldest pottery in East and Northeast Asia: An overview, Quat. Int., 441, 12, 10.1016/j.quaint.2016.12.046 · DOI
  50. Shang, 2007, An early modern human from Tianyuan Cave, Zhoukoudian, China, Proc. Natl. Acad. Sci. USA, 104, 6573, 10.1073/pnas.0702169104 · DOI
  51. Sikora, 2017, Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers, Science, 358, 659, 10.1126/science.aao1807 · DOI · Paper page
  52. Sikora, 2019, The population history of northeastern Siberia since the Pleistocene, Nature, 570, 182, 10.1038/s41586-019-1279-z · DOI · Paper page
  53. Siska, 2017, Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago, Sci. Adv., 3, e1601877, 10.1126/sciadv.1601877 · DOI
  54. Stebich, 2009, Late Pleistocene spread of (cool-) temperate forests in Northeast China and climate changes synchronous with the North Atlantic region, Global Planet. Change, 65, 56, 10.1016/j.gloplacha.2008.10.010 · DOI
  55. Tallavaara, 2015, Human population dynamics in Europe over the Last Glacial Maximum, Proc. Natl. Acad. Sci. USA, 112, 8232, 10.1073/pnas.1503784112 · DOI
  56. Tan, 2013, The adaptive variant EDARV370A is associated with straight hair in East Asians, Hum. Genet., 132, 1187, 10.1007/s00439-013-1324-1 · DOI · Paper page
  57. Wang, 2019, The emergence of early pottery in East Asia: New discoveries and perspectives, J. World Prehist., 32, 73, 10.1007/s10963-018-9126-y · DOI
  58. Wang, 2017, GSA: Genome Sequence Archive, Genomics Proteomics Bioinformatics, 15, 14, 10.1016/j.gpb.2017.01.001 · DOI
  59. Wang, 2021, Genomic insights into the formation of human populations in East Asia, Nature, 591, 413, 10.1038/s41586-021-03336-2 · DOI
  60. Yang, 2017, 40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia, Curr. Biol., 27, 3202, 10.1016/j.cub.2017.09.030 · DOI
  61. Yang, 2020, Ancient DNA indicates human population shifts and admixture in northern and southern China, Science, 369, 282, 10.1126/science.aba0909 · DOI
  62. Ye, 2017, Dietary adaptation of FADS genes in Europe varied across time and geography, Nat. Ecol. Evol., 1, 167, 10.1038/s41559-017-0167 · DOI
  63. Yu, 2020, Paleolithic to Bronze Age Siberians Reveal Connections with First Americans and across Eurasia, Cell, 181, 1232, 10.1016/j.cell.2020.04.037 · DOI
  64. Yue, 2019, Neolithisation in the southern Lesser Khingan Mountains: lithic technologies and ecological adaptation, Antiquity, 93, 1144, 10.15184/aqy.2019.92 · DOI
  65. Zhang, 2019, OSL and AMS 14C Age of the Most Complete Mammoth Fossil Skeleton from Northeastern China and its Paleoclimate Significance, Radiocarbon, 61, 347, 10.1017/RDC.2018.48 · DOI
  66. Zhao, 2013, The Age and Characteristics of the Jade Unearthed from Xiaonanshan Tomb in Raohe County, Bianjiang Kaogu Yanjiu, 2013, 69

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Metadata

Authors
Mao, X., Zhang, H., Qiao, S., Liu, Y., Chang, F., Xie, P., Zhang, M., Wang, T., Li, M., Cao, P., Yang, R., Liu, F., Dai, Q., Feng, X., Ping, W., Lei, C., Olsen, J. W., Bennett, E. A., & Fu, Q.
Venue
Cell
Publisher
Elsevier BV
Published
2021-06
Volume
184
Issue
12
Pages
3256-3266.e13
ISSN
0092-8674
Cited by
198
References
30
Language
en
Funders
  • Howard Hughes Medical Institute (55008731, 2018VCA0016)
  • National Natural Science Foundation of China (91731303, 41820104008, 41630102, 41925009, 41672021)
  • Ministry of Health of the People's Republic of China (XDB26000000)
  • Chinese Academy of Sciences (QYZDB-SSW-DQC003, XDA1905010)
  • Zhengzhou University (XKZDJC202006)
  • National Key Research and Development Program of China (2016YFE0203700)

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