Nucleotide Excision Repair

Oxidants, oxidative stress and the biology of ageing

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The language of covalent histone modifications

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Molecular Mechanisms of Mammalian DNA Repair and the DNA Damage Checkpoints

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Defective repair replication of DNA in xeroderma pigmentosum

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MISMATCH REPAIR IN REPLICATION FIDELITY, GENETIC RECOMBINATION, AND CANCER BIOLOGY

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REPLICATION PROTEIN A: A Heterotrimeric, Single-Stranded DNA-Binding Protein Required for Eukaryotic DNA Metabolism

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Structure and Function of DNA Photolyase and Cryptochrome Blue-Light Photoreceptors

Sancar, A. (2003) · Chemical Reviews · doi:10.1021/cr0204348 · Cited by 1,317

Transcription regulation and animal diversity

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The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η

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DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall

Bohr, V (1985) · Cell · doi:10.1016/0092-8674(85)90150-3 · Cited by 1,237

Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

MELLON, I. (1987) · Cell · doi:10.1016/0092-8674(87)90151-6 · Cited by 1,228

ALTERATION OF NUCLEOSOME STRUCTURE AS A MECHANISM OF TRANSCRIPTIONAL REGULATION

Workman, J. L., & Kingston, R. E. (1998) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.67.1.545 · Cited by 1,159

DNA excision repair

Sancar, A. (1996) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.65.070196.000355 · Cited by 1,131

DNA Replication Fidelity

Kunkel, T. A., & Bebenek, K. (2000) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.69.1.497 · Cited by 1,003

Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes

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THE DISAPPEARANCE OF THYMINE DIMERS FROM DNA: AN ERROR-CORRECTING MECHANISM

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Xeroderma Pigmentosum Group C Protein Complex Is the Initiator of Global Genome Nucleotide Excision Repair

Sugasawa, K., Ng, J. M. Y., Masutani, C., Iwai, S., van der Spek, P. J., Eker, A. P. M., Hanaoka, F., Bootsma, D., & Hoeijmakers, J. H. J. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80132-x · Cited by 899

DNA Repair Helicase: a Component of BTF2 (TFIIH) Basic Transcription Factor

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Kinetic amplification of enzyme discrimination

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The Ubiquitin Ligase Activity in the DDB2 and CSA Complexes Is Differentially Regulated by the COP9 Signalosome in Response to DNA Damage

Groisman, R., Polanowska, J., Kuraoka, I., Sawada, J.-I., Saijo, M., Drapkin, R., Kisselev, A. F., Tanaka, K., & Nakatani, Y. (2003) · Cell · doi:10.1016/s0092-8674(03)00316-7 · Cited by 756

hRAD30 Mutations in the Variant Form of Xeroderma Pigmentosum

Johnson, R. E., Kondratick, C. M., Prakash, S., & Prakash, L. (1999) · Science · doi:10.1126/science.285.5425.263 · Cited by 732

ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes

Troelstra, C., van Gool, A., de Wit, J., Vermeulen, W., Bootsma, D., & Hoeijmakers, J. H. J. (1992) · Cell · doi:10.1016/0092-8674(92)90390-x · Cited by 729

Error-Prone Repair DNA Polymerases in Prokaryotes and Eukaryotes

Goodman, M. F. (2002) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.71.083101.124707 · Cited by 727

RELEASE OF ULTRAVIOLET LIGHT-INDUCED THYMINE DIMERS FROM DNA IN E. COLI K-12

Boyce, R. P., & Howard-Flanders, P. (1964) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.51.2.293 · Cited by 708

Molecular Mechanism of Transcription-Repair Coupling

Selby, C. P., & Sancar, A. (1993) · Science · doi:10.1126/science.8465200 · Cited by 656

A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region

Sancar, A., & Rupp, W. D. (1983) · Cell · doi:10.1016/0092-8674(83)90354-9 · Cited by 626

Biochemistry and genetics of eukaryotic mismatch repair.Preprint

Kolodner, R. D. (1996) · Genes & Development · doi:10.1101/gad.10.12.1433 · Cited by 589

Expression of the p48 xeroderma pigmentosum gene is p53-dependent and is involved in global genomic repair

Hwang, B. J., Ford, J. M., Hanawalt, P. C., & Chu, G. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.2.424 · Cited by 581

Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand

Mellon, I., & Hanawalt, P. C. (1989) · Nature · doi:10.1038/342095a0 · Cited by 573

Conserved domains in DNA repair proteins and evolution of repair systems

Aravind, L. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.5.1223 · Cited by 571

The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA.

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Xeroderma Pigmentosum Group F Caused by a Defect in a Structure-Specific DNA Repair Endonuclease

Sijbers, A. M., de Laat, W. L., Ariza, R. R., Biggerstaff, M., Wei, Y.-F., Moggs, J. G., Carter, K. C., Shell, B. K., Evans, E. L., de Jong, M. C., et al. (1996) · Cell · doi:10.1016/s0092-8674(00)80155-5 · Cited by 546

The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH

Henning, K. A., Li, L., Iyer, N., McDaniel, L. D., Reagan, M. S., Legerski, R., Schultz, R. A., Stefanini, M., Lehmann, A. R., Mayne, L. V., et al. (1995) · Cell · doi:10.1016/0092-8674(95)90028-4 · Cited by 507

Mechanism of open complex and dual incision formation by human nucleotide excision repair factors

Evans, E., Moggs, J. G., Hwang, J. R., Egly, J., & Wood, R. D. (1997) · The EMBO Journal · doi:10.1093/emboj/16.21.6559 · Cited by 500

The Structure-Specific Endonuclease Ercc1-Xpf Is Required To Resolve DNA Interstrand Cross-Link-Induced Double-Strand Breaks

Niedernhofer, L. J., Odijk, H., Budzowska, M., van Drunen, E., Maas, A., Theil, A. F., de Wit, J., Jaspers, N. G. J., Beverloo, H. B., Hoeijmakers, J. H. J., et al. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.13.5776-5787.2004 · Cited by 493

XPG endonuclease makes the 3′ incision in human DNA nucleotide excision repair

O’Donovan, A., Davies, A. A., Moggs, J. G., West, S. C., & Wood, R. D. (1994) · Nature · doi:10.1038/371432a0 · Cited by 487

Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II

Drapkin, R., Reardon, J. T., Ansari, A., Huang, J.-C., Zawel, L. S., Ahn, K., Sancar, A., & Reinberg, D. (1994) · Nature · doi:10.1038/368769a0 · Cited by 478

Reconstitution of Human DNA Repair Excision Nuclease in a Highly Defined System

Mu, D., Park, C.-H., Matsunaga, T., Hsu, D. S., Reardon, J. T., & Sancar, A. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.6.2415 · Cited by 476

A phylogenomic study of DNA repair genes, proteins, and processes

Eisen, J. A., & Hanawalt, P. C. (1999) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(99)00050-6 · Cited by 469

Rad23 links DNA repair to the ubiquitin/proteasome pathway

Schauber, C., Chen, L., Tongaonkar, P., Vega, I. E., Lambertson, D., Potts, W., & Madura, K. (1998) · Nature · doi:10.1038/35661 · Cited by 457

Subpathways of nucleotide excision repair and their regulation

Hanawalt, P. C. (2002) · Oncogene · doi:10.1038/sj.onc.1206096 · Cited by 447

Nucleotide Excision Repair in Mammalian Cells

Wood, R. D. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.38.23465 · Cited by 444

Human nucleotide excision nuclease removes thymine dimers from DNA by incising the 22nd phosphodiester bond 5' and the 6th phosphodiester bond 3' to the photodimer.

Huang, J. C., Svoboda, D. L., Reardon, J. T., & Sancar, A. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.8.3664 · Cited by 437

A multistep damage recognition mechanism for global genomic nucleotide excision repair

Sugasawa, K., Okamoto, T., Shimizu, Y., Masutani, C., Iwai, S., & Hanaoka, F. (2001) · Genes & Development · doi:10.1101/gad.866301 · Cited by 435

A presumed DNA helicase encoded by ERCC-3 is involved in the human repair disorders xeroderma pigmentosum and Cockayne's syndrome

Weeda, G., van Ham, R. C. A., Vermeulen, W., Bootsma, D., van der Eb, A. J., & Hoeijmakers, J. H. J. (1990) · Cell · doi:10.1016/0092-8674(90)90122-u · Cited by 432

Increased Susceptibility to Ultraviolet-B and Carcinogens of Mice Lacking the DNA Excision Repair Gene XPA

Vries, A. D., van Oostrom, C. T. M., Hofhuis, F. M. A., Dortant, P. M., Berg, R. J. W., Gruijl, F. R. D., Wester, P. W., van Kreijl, C. F., Capel, P. J. A., Steeg, H. V., et al. (1995) · Nature · doi:10.1038/377169a0 · Cited by 406

Purification and cloning of a nucleotide excision repair complex involving the xeroderma pigmentosum group C protein and a human homologue of yeast RAD23.

Masutani, C., Sugasawa, K., Yanagisawa, J., Sonoyama, T., Ui, M., Enomoto, T., Takio, K., Tanaka, K., van der Spek, P. J., & Bootsma, D. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06452.x · Cited by 400

ERCC1/XPF Removes the 3′ Overhang from Uncapped Telomeres and Represses Formation of Telomeric DNA-Containing Double Minute Chromosomes

Zhu, X., Niedernhofer, L. J., Küster, B., Mann, M., Hoeijmakers, J. H. J., & de Lange, T. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00478-7 · Cited by 399

Human STAGA Complex Is a Chromatin-Acetylating Transcription Coactivator That Interacts with Pre-mRNA Splicing and DNA Damage-Binding Factors In Vivo

Martinez, E., Palhan, V. B., Tjernberg, A., Lymar, E. S., Gamper, A. M., Kundu, T. K., Chait, B. T., & Roeder, R. G. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.20.6782-6795.2001 · Cited by 397

RPA involvement in the damage-recognition and incision steps of nucleotide excision repair

He, Z., Henricksen, L. A., Wold, M. S., & Ingles, C. J. (1995) · Nature · doi:10.1038/374566a0 · Cited by 389

Analysis of a human DNA excision repair gene involved in group A xeroderma pigmentosum and containing a zinc-finger domain

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Initiation of Base Excision Repair: Glycosylase Mechanisms and Structures

McCullough, A. K., Dodson, M. L., & Lloyd, R. S. (1999) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.68.1.255 · Cited by 388

Disruption of mouse ERCC1 results in a novel repair syndrome with growth failure, nuclear abnormalities and senescence

Weeda, G., Donker, I., de Wit, J., Morreau, H., Janssens, R. C., Vissers, C. J., Nigg, A. L., STEEG, H. V., Bootsma, D., & Hoeijmakers, J. H. J. (1997) · Current Biology · doi:10.1016/s0960-9822(06)00190-4 · Cited by 386

The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor.

Schaeffer, L., Moncollin, V., Roy, R., Staub, A., Mezzina, M., Sarasin, A. R., Weeda, G., Hoeijmakers, J. H. J., & Egly, J. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06522.x · Cited by 381

Mechanisms of transcription-coupled DNA repair

Svejstrup, J. Q. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm703 · Cited by 380

Replication protein A interacts with AID to promote deamination of somatic hypermutation targets

Chaudhuri, J., Khuong, C., & Alt, F. W. (2004) · Nature · doi:10.1038/nature02821 · Cited by 379

Nucleotide excision repair in yeast

Prakash, S., & Prakash, L. (2000) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/s0027-5107(00)00037-3 · Cited by 377

ATP-Dependent Chromatin Remodeling by the Cockayne Syndrome B DNA Repair-Transcription-Coupling Factor

Citterio, E., van den Boom, V., Schnitzler, G. R., Kanaar, R., Bonte, E. J., Kingston, R. E., Hoeijmakers, J. H. J., & Vermeulen, W. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.20.7643-7653.2000 · Cited by 376

Reaction Mechanism of Human DNA Repair Excision Nuclease

Mu, D., Hsu, D. S., & Sancar, A. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.14.8285 · Cited by 374

In vitro repair of oxidative DNA damage by human nucleotide excision repair system: Possible explanation for neurodegeneration in Xeroderma pigmentosum patients

Reardon, J. T., Bessho, T., Kung, H. C., Bolton, P. H., & Sancar, A. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.17.9463 · Cited by 366

Mutations in the XPD helicase gene result in XP and TTD phenotypes, preventing interaction between XPD and the p44 subunit of TFIIH

Coin, F., Marinoni, J., Rodolfo, C., Fribourg, S., Pedrini, A. M., & Egly, J. (1998) · Nature Genetics · doi:10.1038/2491 · Cited by 350

Nucleotide excision repair of DNA with recombinant human proteins: definition of the minimal set of factors, active forms of TFIIH, and modulation by CAKPreprint

Araújo, S. J., Tirode, F., Coin, F., Pospiech, H., Syväoja, J. E., Stucki, M., Hübscher, U., Egly, J., & Wood, R. D. (2000) · Genes & Development · doi:10.1101/gad.14.3.349 · Cited by 344

Translesion DNA synthesis in eukaryotes: A one- or two-polymerase affair

Prakash, S., & Prakash, L. (2002) · Genes & Development · doi:10.1101/gad.1009802 · Cited by 344

Centrosome Protein Centrin 2/Caltractin 1 Is Part of the Xeroderma Pigmentosum Group C Complex That Initiates Global Genome Nucleotide Excision Repair

Araki, M., Masutani, C., Takemura, M., Uchida, A., Sugasawa, K., Kondoh, J., Ohkuma, Y., & Hanaoka, F. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m100855200 · Cited by 335

A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A

Giglia‐Mari, G., Coin, F., Ranish, J. A., Hoogstraten, D., Theil, A. F., Wijgers, N., Jaspers, N. G. J., Raams, A., Argentini, M., van der Spek, P. J., et al. (2004) · Nature Genetics · doi:10.1038/ng1387 · Cited by 334

DNA-binding polarity of human replication protein A positions nucleases in nucleotide excision repairPreprint

de Laat, W. L., Appeldoorn, E., Sugasawa, K., Weterings, E., Jaspers, N. G. J., & Hoeijmakers, J. H. J. (1998) · Genes & Development · doi:10.1101/gad.12.16.2598 · Cited by 333

Mice with DNA repair gene (ERCC-1) deficiency have elevated levels of p53, liver nuclear abnormalities and die before weaning

McWhir, J., Selfridge, J., Harrison, D. J., Squires, S., & Melton, D. W. (1993) · Nature Genetics · doi:10.1038/ng1193-217 · Cited by 323

THE SOS RESPONSE: Recent Insights into umuDC -Dependent Mutagenesis and DNA Damage Tolerance

Sutton, M. D., Smith, B. T., Godoy, V. G., & Walker, G. C. (2000) · Annual Review of Genetics · doi:10.1146/annurev.genet.34.1.479 · Cited by 318

Cockayne syndrome group B protein enhances elongation by RNA polymerase II

Selby, C. P., & Sancar, A. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.21.11205 · Cited by 309

E. coli Transcription Repair Coupling Factor (Mfd Protein) Rescues Arrested Complexes by Promoting Forward Translocation

Park, J., Marr, M. T., & Roberts, J. W. (2002) · Cell · doi:10.1016/s0092-8674(02)00769-9 · Cited by 306

Specific association between the human DNA repair proteins XPA and ERCC1.

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Reconstitution of the Transcription Factor TFIIH

Tirode, F., Busso, D., Coin, F., & Egly, J.-M. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80177-x · Cited by 301

Molecular cloning of a human DNA repair gene

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Cellular machineries for chromosomal DNA repairPreprint

Peterson, C. L., & Côté, J. (2004) · Genes & Development · doi:10.1101/gad.1182704 · Cited by 294

Base Excision Repair of Oxidative DNA Damage Activated by XPG Protein

Klungland, A., Höss, M., Gunz, D., Constantinou, A., Clarkson, S. G., Doetsch, P. W., Bolton, P. H., Wood, R. D., & Lindahl, T. L. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80172-0 · Cited by 291

Preferential binding of the xeroderma pigmentosum group A complementing protein to damaged DNA

Jones, C. J., & Wood, R. D. (1993) · Biochemistry · doi:10.1021/bi00096a021 · Cited by 291

Rad23 Promotes the Targeting of Proteolytic Substrates to the Proteasome

Chen, L., & Madura, K. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.13.4902-4913.2002 · Cited by 291

High incidence of ultraviolet-B-or chemical-carcinogen-induced skin tumours in mice lacking the xeroderma pigmentosum group A gene

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Efficient nucleotide excision repair of cisplatin, oxaliplatin, and Bis-aceto-ammine-dichloro-cyclohexylamine-platinum(IV) (JM216) platinum intrastrand DNA diadducts.

Reardon, J. T., Vaisman, A., Chaney, S. G., & Sancar, A. (1999) · PubMed · Cited by 283

Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair.Preprint

Harrington, J., & Lieber, M. R. (1994) · Genes & Development · doi:10.1101/gad.8.11.1344 · Cited by 280

Repair of an Interstrand DNA Cross-link Initiated by ERCC1-XPF Repair/Recombination Nuclease

Kuraoka, I., Kobertz, W. R., Ariza, R. R., Biggerstaff, M., Essigmann, J. M., & Wood, R. D. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.c000337200 · Cited by 280

The Xeroderma Pigmentosum Group C Protein Complex XPC-HR23B Plays an Important Role in the Recruitment of Transcription Factor IIH to Damaged DNA

Yokoi, M., Masutani, C., Maekawa, T., Sugasawa, K., Ohkuma, Y., & Hanaoka, F. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.13.9870 · Cited by 277

Light and dark in chromatin repair: repair of UV‐induced DNA lesions by photolyase and nucleotide excision repair

Thoma, F. (1999) · The EMBO Journal · doi:10.1093/emboj/18.23.6585 · Cited by 271

Human Transcription-Repair Coupling Factor CSB/ERCC6 Is a DNA-stimulated ATPase but Is Not a Helicase and Does Not Disrupt the Ternary Transcription Complex of Stalled RNA Polymerase II

Selby, C. P., & Sancar, A. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.3.1885 · Cited by 267

ERCC2: cDNA cloning and molecular characterization of a human nucleotide excision repair gene with high homology to yeast RAD3.

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A novel regulation mechanism of DNA repair by damage-induced and RAD23-dependent stabilization of xeroderma pigmentosum group C proteinPreprint

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An Interaction between the DNA Repair Factor XPA and Replication Protein A Appears Essential for Nucleotide Excision Repair

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High susceptibility to ultraviolet-induced carcinogenesis in mice lacking XPC

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Nucleotide excision repair: From E. coli to man

Petit, C. R., & Sancar, A. (1999) · Biochimie · doi:10.1016/s0300-9084(99)80034-0 · Cited by 237

Expression cloning of a human DNA repair gene involved in xeroderma pigmentosum group C

Legerski, R. J., & Peterson, C. A. (1992) · Nature · doi:10.1038/359070a0 · Cited by 234

RELATIONSHIPS BETWEEN DNA REPAIR AND TRANSCRIPTION

Friedberg, E. C. (1996) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.65.070196.000311 · Cited by 231

DNA Structural Elements Required for ERCC1-XPF Endonuclease Activity

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Substrate spectrum of human excinuclease: repair of abasic sites, methylated bases, mismatches, and bulky adducts.

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The XPC-HR23B complex displays high affinity and specificity for damaged DNA in a true-equilibrium fluorescence assay

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Cloning of the 62-Kilodalton Component of Basic Transcription Factor BTF2

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Relationship of the Xeroderma Pigmentosum Group E DNA Repair Defect to the Chromatin and DNA Binding Proteins UV-DDB and Replication Protein A

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Nucleotide excision repair 3' endonuclease XPG stimulates the activity of base excision repairenzyme thymine glycol DNA glycosylase

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Activity of individual ERCC1 and XPF subunits in DNA nucleotide excision repair

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Nucleotide excision repair of DNA by human cell extracts is suppressed in reconstituted nucleosomes.

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DNA Damage Recognition by XPA Protein Promotes Efficient Recruitment of Transcription Factor II H

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Physical and Functional Interaction between the XPF/ERCC1 Endonuclease and hRad52

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Developmental Defects and Male Sterility in Mice Lacking the Ubiquitin-Like DNA Repair Gene mHR23B

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Microbial shifts in the aging mouse gut

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Circadian control of XPA and excision repair of cisplatin-DNA damage by cryptochrome and HERC2 ubiquitin ligase

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Focus on UV-Induced DNA Damage and Repair—Disease Relevance and Protective Strategies

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Roles of UVA radiation and DNA damage responses in melanoma pathogenesis

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Phylogenomic analysis of the GIY-YIG nuclease superfamily

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Base excision repair and nucleotide excision repair

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Base Excision Repair and Nucleotide Excision Repair

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Direct involvement of p53 in the base excision repair pathway of the DNA repair machinery

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Both base excision repair and nucleotide excision repair in humans are influenced by nutritional factors

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Oxidative DNA damage and nucleotide excision repair

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