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Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels
Abstract
Proteins from silver-stained gels can be digested enzymatically and the resulting peptide analyzed and sequenced by mass spectrometry. Standard proteins yield the same peptide maps when extracted from Coomassie- and silver-stained gels, as judged by electrospray and MALDI mass spectrometry. The low nanogram range can be reached by the protocols described here, and the method is robust. A silver-stained one-dimensional gel of a fraction from yeast proteins was analyzed by nano-electrospray tandem mass spectrometry. In the sequencing, more than 1000 amino acids were covered, resulting in no evidence of chemical modifications due to the silver staining procedure. Silver staining allows a substantial shortening of sample preparation time and may, therefore, be preferable over Coomassie staining. This work removes a major obstacle to the low-level sequence analysis of proteins separated on polyacrylamide gels.
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Li, F., Zhang, T., Syed, A., Elbakry, A., Holmer, N., Nguyen, H., Mukkavalli, S., Greenberg, R. A., & D’Andrea, A. D. (2025) · Nature Communications · doi:10.1038/s41467-025-56834-6 · Cited by 13
ApoE3 Christchurch and tau interaction as a protective mechanism against Alzheimer's disease
Perez‐Corredor, P., Arevalo‐Alquichire, S., Mazzarino, R. C., O'Hare, M., Muriel‐Torres, A. F., Vacano, G. N., Vanderleest, T. E., Miller, W. P., Pineda‐Lopez, L., Patel, S., et al. (2025) · Alzheimer's & Dementia · doi:10.1002/alz.70396 · Cited by 7
Deletion of Enigma Homologue from the Z-disc slows tension development kinetics in mouse myocardium
Gregorich, Z. R., Patel, J. R., Cai, W., Lin, Z., Heurer, R., Fitzsimons, D. P., Moss, R. L., & Ge, Y. (2019) · Journal of General Physiology · doi:10.1085/jgp.201812214 · Cited by 6
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Fundamental Methods in Molecular Biology
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Metadata
- Authors
- Shevchenko, A., Wilm, M., Vorm, O., & Mann, M.
- Venue
- Analytical Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 1996-03-01
- Volume
- 68
- Issue
- 5
- Pages
- 850-858
- ISSN
- 0003-2700 (ISSN-L)
- 1520-6882
- OpenAlex
- W2078594804
- Cited by
- 8,995
- References
- 2
- FWCI
- 58.14
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.