Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Huang, Da Wei, Sherman, Brad T, Lempicki, Richard A·2009·Nature Protocols
Cited by (733)
Items 301–400 of 733
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- Cell-type, allelic, and genetic signatures in the human pancreatic beta cell transcriptomeNica, Alexandra C., Ongen, Halit, Irminger, Jean-Claude, Bosco, Domenico, Berney, Thierry, Antonarakis, Stylianos E., Halban, Philippe A., Dermitzakis, Emmanouil T. · 2013 · Genome Research
- Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancerRisom, Tyler, Langer, Ellen M., Chapman, Margaret P., Rantala, Juha, Fields, Andrew J., Boniface, Christopher, Alvarez, Mariano J., Kendsersky, Nicholas D., Pelz, Carl R., Johnson-Camacho, Katherine et al. · 2018 · Nature Communications
- Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor bindingPtasinska, A, Assi, S A, Mannari, D, James, S R, Williamson, D, Dunne, J, Hoogenkamp, M, Wu, M, Care, M, McNeill, H et al. · 2012 · Leukemia
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- Gut Microbiota Condition the Therapeutic Efficacy of Trastuzumab in HER2-Positive Breast CancerDi Modica, Martina, Gargari, Giorgio, Regondi, Viola, Bonizzi, Arianna, Arioli, Stefania, Belmonte, Beatrice, De Cecco, Loris, Fasano, Elena, Bianchi, Francesca, Bertolotti, Alessia et al. · 2021 · Cancer Research
- KRAS
<sup>G12C</sup>
inhibition produces a driver-limited state revealing collateral dependenciesLou, Kevin, Steri, Veronica, Ge, Alex Y., Hwang, Y. Christina, Yogodzinski, Christopher H., Shkedi, Arielle R., Choi, Alex L. M., Mitchell, Dominique C., Swaney, Danielle L., Hann, Byron et al. · 2019 · Science Signaling
- HMGB2 orchestrates the chromatin landscape of senescence-associated secretory phenotype gene lociAird, Katherine M., Iwasaki, Osamu, Kossenkov, Andrew V., Tanizawa, Hideki, Fatkhutdinov, Nail, Bitler, Benjamin G., Le, Linh, Alicea, Gretchen, Yang, Ting-Lin, Johnson, F. Brad et al. · 2016 · Journal of Cell Biology
- Astrocyte senescence promotes glutamate toxicity in cortical neuronsLimbad, Chandani, Oron, Tal Ronnen, Alimirah, Fatouma, Davalos, Albert R., Tracy, Tara E., Gan, Li, Desprez, Pierre-Yves, Campisi, Judith · 2020 · PLOS ONE
- Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA–seqReinius, Björn, Mold, Jeff E, Ramsköld, Daniel, Deng, Qiaolin, Johnsson, Per, Michaëlsson, Jakob, Frisén, Jonas, Sandberg, Rickard · 2016 · Nature Genetics
- Peripheral whole blood microRNA alterations in major depression and bipolar disorderMaffioletti, Elisabetta, Cattaneo, Annamaria, Rosso, Gianluca, Maina, Giuseppe, Maj, Carlo, Gennarelli, Massimo, Tardito, Daniela, Bocchio-Chiavetto, Luisella · 2016 · Journal of Affective Disorders
- Gene expression in skin and lymphoblastoid cells: refined statistical method reveals extensive overlap in cis-eQTL signalsDing, Jun, Gudjonsson, Johann E., Liang, Liming, Stuart, Philip E., Li, Yun, Chen, Wei, Weichenthal, Michael, Ellinghaus, Eva, Franke, Andre, Cookson, William et al. · 2010 · The American Journal of Human Genetics
- The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturationLi, Qin, Zheng, Sika, Han, Areum, Lin, Chia-Ho, Stoilov, Peter, Fu, Xiang-Dong, Black, Douglas L · 2014 · eLife
- Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factorsGrant, Gavin D., Brooks, Lionel, Zhang, Xiaoyang, Mahoney, J. Matthew, Martyanov, Viktor, Wood, Tammara A., Sherlock, Gavin, Cheng, Chao, Whitfield, Michael L. · 2013 · Molecular Biology of the Cell
- Chronic oxidative stress promotes H2AX protein degradation and enhances chemosensitivity in breast cancer patientsGruosso, Tina, Mieulet, Virginie, Cardon, Melissa, Bourachot, Brigitte, Kieffer, Yann, Devun, Flavien, Dubois, Thierry, Dutreix, Marie, Vincent‐Salomon, Anne, Miller, Kyle Malcolm et al. · 2016 · EMBO Molecular Medicine
- Misregulation of an Activity-Dependent Splicing Network as a Common Mechanism Underlying Autism Spectrum DisordersQuesnel-Vallières, Mathieu, Dargaei, Zahra, Irimia, Manuel, Gonatopoulos-Pournatzis, Thomas, Ip, Joanna Y., Wu, Mingkun, Sterne-Weiler, Timothy, Nakagawa, Shinichi, Woodin, Melanie A., Blencowe, Benjamin J. et al. · 2016 · Molecular Cell
- SLICE: determining cell differentiation and lineage based on single cell entropyGuo, Minzhe, Bao, Erik L., Wagner, Michael, Whitsett, Jeffrey A., Xu, Yan · 2016 · Nucleic Acids Research
- Epigenetic and inflammatory marker profiles associated with depression in a community-based epidemiologic sampleUddin, M., Koenen, K. C., Aiello, A. E., Wildman, D. E., de los Santos, R., Galea, S. · 2011 · Psychological Medicine
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- Exercise alters mouse sperm small noncoding RNAs and induces a transgenerational modification of male offspring conditioned fear and anxietyShort, A K, Yeshurun, S, Powell, R, Perreau, V M, Fox, A, Kim, J H, Pang, T Y, Hannan, A J · 2017 · Translational Psychiatry
- ChIP-Enrich: gene set enrichment testing for ChIP-seq dataWelch, Ryan P., Lee, Chee, Imbriano, Paul M., Patil, Snehal, Weymouth, Terry E., Smith, R. Alex, Scott, Laura J., Sartor, Maureen A. · 2014 · Nucleic Acids Research
- Proteomic analysis of age-dependent changes in protein solubility identifies genes that modulate lifespanReis‐Rodrigues, Pedro, Czerwieniec, Gregg, Peters, Theodore W., Evani, Uday S., Alavez, Silvestre, Gaman, Emily A., Vantipalli, Maithili, Mooney, Sean D., Gibson, Bradford W., Lithgow, Gordon J. et al. · 2012 · Aging Cell
- A Prader–Willi locus lncRNA cloud modulates diurnal genes and energy expenditurePowell, Weston T., Coulson, Rochelle L., Crary, Florence K., Wong, Spencer S., Ach, Robert A., Tsang, Peter, Alice Yamada, N., Yasui, Dag H., LaSalle, Janine M. · 2013 · Human Molecular Genetics
- Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reactionGenshaft, Alex S, Li, Shuqiang, Gallant, Caroline J., Darmanis, Spyros, Prakadan, Sanjay M., Ziegler, Carly G. K., Lundberg, Martin, Fredriksson, Simon, Hong, Joyce, Regev, Aviv et al. · 2016 · Genome Biology
- Accelerated Recruitment of New Brain Development Genes into the Human GenomeZhang, Yong E., Landback, Patrick, Vibranovski, Maria D., Long, Manyuan · 2011 · PLoS Biology
- 4D Genome Rewiring during Oncogene-Induced and Replicative SenescenceSati, Satish, Bonev, Boyan, Szabo, Quentin, Jost, Daniel, Bensadoun, Paul, Serra, Francois, Loubiere, Vincent, Papadopoulos, Giorgio Lucio, Rivera-Mulia, Juan-Carlos, Fritsch, Lauriane et al. · 2020 · Molecular Cell
- Mechanical control of innate immune responses against viral infection revealed in a human lung alveolus chipBai, Haiqing, Si, Longlong, Jiang, Amanda, Belgur, Chaitra, Zhai, Yunhao, Plebani, Roberto, Oh, Crystal Yuri, Rodas, Melissa, Patil, Aditya, Nurani, Atiq et al. · 2022 · Nature Communications
- Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21Hibaoui, Youssef, Grad, Iwona, Letourneau, Audrey, Sailani, M Reza, Dahoun, Sophie, Santoni, Federico A, Gimelli, Stefania, Guipponi, Michel, Pelte, Marie Françoise, Béna, Frédérique et al. · 2014 · EMBO Molecular Medicine
- Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopiaKlaus, Johannes, Kanton, Sabina, Kyrousi, Christina, Ayo-Martin, Ane Cristina, Di Giaimo, Rossella, Riesenberg, Stephan, O’Neill, Adam C., Camp, J. Gray, Tocco, Chiara, Santel, Malgorzata et al. · 2019 · Nature Medicine
- Iron drives T helper cell pathogenicity by promoting RNA-binding protein PCBP1-mediated proinflammatory cytokine productionWang, Zhizhang, Yin, Weijie, Zhu, Lizhen, Li, Jia, Yao, Yikun, Chen, Feifei, Sun, Mengmeng, Zhang, Jiayuan, Shen, Nan, Song, Yan et al. · 2018 · Immunity
- C1q-induced LRP1B and GPR6 Proteins Expressed Early in Alzheimer Disease Mouse Models, Are Essential for the C1q-mediated Protection against Amyloid-β NeurotoxicityBenoit, Marie E., Hernandez, Michael X., Dinh, Minhan L., Benavente, Francisca, Vasquez, Osvaldo, Tenner, Andrea J. · 2013 · Journal of Biological Chemistry
- Commensal microbe-derived acetate suppresses NAFLD/NASH development via hepatic FFAR2 signalling in miceAoki, Ryo, Onuki, Masayoshi, Hattori, Koya, Ito, Masato, Yamada, Takahiro, Kamikado, Kohei, Kim, Yun-Gi, Nakamoto, Nobuhiro, Kimura, Ikuo, Clarke, Julie M. et al. · 2021 · Microbiome
- Greater muscle protein synthesis and mitochondrial biogenesis in males compared with females during sprint interval trainingScalzo, Rebecca L., Peltonen, Garrett L., Binns, Scott E., Shankaran, Mahalakshmi, Giordano, Gregory R., Hartley, Dylan A., Klochak, Anna L., Lonac, Mark C., Paris, Hunter L. R., Szallar, Steve E. et al. · 2014 · The FASEB Journal
- Tau exacerbates excitotoxic brain damage in an animal model of strokeBi, Mian, Gladbach, Amadeus, van Eersel, Janet, Ittner, Arne, Przybyla, Magdalena, van Hummel, Annika, Chua, Sook Wern, van der Hoven, Julia, Lee, Wei S., Müller, Julius et al. · 2017 · Nature Communications
- Identification and Application of Gene Expression Signatures Associated with Lifespan ExtensionTyshkovskiy, Alexander, Bozaykut, Perinur, Borodinova, Anastasia A., Gerashchenko, Maxim V., Ables, Gene P., Garratt, Michael, Khaitovich, Philipp, Clish, Clary B., Miller, Richard A., Gladyshev, Vadim N. · 2019 · Cell Metabolism
- Human Monocyte Subsets Are Transcriptionally and Functionally Altered in Aging in Response to Pattern Recognition Receptor AgonistsMetcalf, Talibah U, Wilkinson, Peter A, Cameron, Mark J, Ghneim, Khader, Chiang, Cindy, Wertheimer, Anne M, Hiscott, John B, Nikolich-Zugich, Janko, Haddad, Elias K · 2017 · The Journal of Immunology
- Inhibition of HDAC8 and HDAC9 by microbial short-chain fatty acids breaks immune tolerance of the epidermis to TLR ligandsSanford, James A., Zhang, Ling-Juan, Williams, Michael R., Gangoiti, Jon A., Huang, Chun-Ming, Gallo, Richard L. · 2016 · Science Immunology
- Males Shorten the Life Span of
<i>C. elegans</i>
Hermaphrodites via Secreted CompoundsMaures, Travis J., Booth, Lauren N., Benayoun, Bérénice A., Izrayelit, Yevgeniy, Schroeder, Frank C., Brunet, Anne · 2014 · Science
- Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cellsMenendez, Daniel, Nguyen, Thuy-Ai, Freudenberg, Johannes M., Mathew, Viju J., Anderson, Carl W., Jothi, Raja, Resnick, Michael A. · 2013 · Nucleic Acids Research
- Single-cell analysis reveals that stochasticity and paracrine signaling control interferon-alpha production by plasmacytoid dendritic cellsWimmers, Florian, Subedi, Nikita, van Buuringen, Nicole, Heister, Daan, Vivié, Judith, Beeren-Reinieren, Inge, Woestenenk, Rob, Dolstra, Harry, Piruska, Aigars, Jacobs, Joannes F. M. et al. · 2018 · Nature Communications
- A biochemical landscape of A-to-I RNA editing in the human brain transcriptomeSakurai, Masayuki, Ueda, Hiroki, Yano, Takanori, Okada, Shunpei, Terajima, Hideki, Mitsuyama, Toutai, Toyoda, Atsushi, Fujiyama, Asao, Kawabata, Hitomi, Suzuki, Tsutomu · 2014 · Genome Research
- mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortexDillman, Allissa A, Hauser, David N, Gibbs, J Raphael, Nalls, Michael A, McCoy, Melissa K, Rudenko, Iakov N, Galter, Dagmar, Cookson, Mark R · 2013 · Nature Neuroscience
- The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genesReddy, Timothy E., Gertz, Jason, Crawford, Gregory E., Garabedian, Michael J., Myers, Richard M. · 2012 · Molecular and Cellular Biology
- Stoichiometry of site-specific lysine acetylation in an entire proteomeBaeza, Josue, Dowell, James A., Smallegan, Michael J., Fan, Jing, Amador-Noguez, Daniel, Khan, Zia, Denu, John M. · 2014 · Journal of Biological Chemistry
- The transcriptional response of the islet to pregnancy in miceRieck, Sebastian, White, Peter, Schug, Jonathan, Fox, Alan J., Smirnova, Olga, Gao, Nan, Gupta, Rana K., Wang, Zhao V., Scherer, Philipp E., Keller, Mark P. et al. · 2009 · Molecular Endocrinology
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- FOXM1 drives proximal tubule proliferation during repair from acute ischemic kidney injuryChang-Panesso, Monica, Kadyrov, Farid F., Lalli, Matthew, Wu, Haojia, Ikeda, Shiyo, Kefaloyianni, Eirini, Abdelmageed, Mai M., Herrlich, Andreas, Kobayashi, Akio, Humphreys, Benjamin D. · 2019 · Journal of Clinical Investigation
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- E2F7 represses a network of oscillating cell cycle genes to control S-phase progressionWestendorp, Bart, Mokry, Michal, Groot Koerkamp, Marian J.A., Holstege, Frank C.P., Cuppen, Edwin, de Bruin, Alain · 2012 · Nucleic Acids Research
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