Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Huang, Da Wei, Sherman, Brad T, Lempicki, Richard A·2009·Nature Protocols

Cited by (733)

Items 301–400 of 733

  1. Gene networks specific for innate immunity define post-traumatic stress disorder
    Breen, M S, Maihofer, A X, Glatt, S J, Tylee, D S, Chandler, S D, Tsuang, M T, Risbrough, V B, Baker, D G, O'Connor, D T, Nievergelt, C M et al. · 2015 · Molecular Psychiatry
  2. Cell-type, allelic, and genetic signatures in the human pancreatic beta cell transcriptome
    Nica, Alexandra C., Ongen, Halit, Irminger, Jean-Claude, Bosco, Domenico, Berney, Thierry, Antonarakis, Stylianos E., Halban, Philippe A., Dermitzakis, Emmanouil T. · 2013 · Genome Research
  3. Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer
    Risom, Tyler, Langer, Ellen M., Chapman, Margaret P., Rantala, Juha, Fields, Andrew J., Boniface, Christopher, Alvarez, Mariano J., Kendsersky, Nicholas D., Pelz, Carl R., Johnson-Camacho, Katherine et al. · 2018 · Nature Communications
  4. Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor binding
    Ptasinska, A, Assi, S A, Mannari, D, James, S R, Williamson, D, Dunne, J, Hoogenkamp, M, Wu, M, Care, M, McNeill, H et al. · 2012 · Leukemia
  5. Neuronal CRTC-1 governs systemic mitochondrial metabolism and lifespan via a catecholamine signal
    Burkewitz, Kristopher, Morantte, Ianessa, Weir, Heather J.M., Yeo, Robin, Zhang, Yue, Huynh, Frank K., Ilkayeva, Olga R., Hirschey, Matthew D., Grant, Ana R., Mair, William B. · 2015 · Cell
  6. Gut Microbiota Condition the Therapeutic Efficacy of Trastuzumab in HER2-Positive Breast Cancer
    Di Modica, Martina, Gargari, Giorgio, Regondi, Viola, Bonizzi, Arianna, Arioli, Stefania, Belmonte, Beatrice, De Cecco, Loris, Fasano, Elena, Bianchi, Francesca, Bertolotti, Alessia et al. · 2021 · Cancer Research
  7. KRAS <sup>G12C</sup> inhibition produces a driver-limited state revealing collateral dependencies
    Lou, Kevin, Steri, Veronica, Ge, Alex Y., Hwang, Y. Christina, Yogodzinski, Christopher H., Shkedi, Arielle R., Choi, Alex L. M., Mitchell, Dominique C., Swaney, Danielle L., Hann, Byron et al. · 2019 · Science Signaling
  8. HMGB2 orchestrates the chromatin landscape of senescence-associated secretory phenotype gene loci
    Aird, Katherine M., Iwasaki, Osamu, Kossenkov, Andrew V., Tanizawa, Hideki, Fatkhutdinov, Nail, Bitler, Benjamin G., Le, Linh, Alicea, Gretchen, Yang, Ting-Lin, Johnson, F. Brad et al. · 2016 · Journal of Cell Biology
  9. Astrocyte senescence promotes glutamate toxicity in cortical neurons
    Limbad, Chandani, Oron, Tal Ronnen, Alimirah, Fatouma, Davalos, Albert R., Tracy, Tara E., Gan, Li, Desprez, Pierre-Yves, Campisi, Judith · 2020 · PLOS ONE
  10. Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA–seq
    Reinius, Björn, Mold, Jeff E, Ramsköld, Daniel, Deng, Qiaolin, Johnsson, Per, Michaëlsson, Jakob, Frisén, Jonas, Sandberg, Rickard · 2016 · Nature Genetics
  11. Peripheral whole blood microRNA alterations in major depression and bipolar disorder
    Maffioletti, Elisabetta, Cattaneo, Annamaria, Rosso, Gianluca, Maina, Giuseppe, Maj, Carlo, Gennarelli, Massimo, Tardito, Daniela, Bocchio-Chiavetto, Luisella · 2016 · Journal of Affective Disorders
  12. Gene expression in skin and lymphoblastoid cells: refined statistical method reveals extensive overlap in cis-eQTL signals
    Ding, Jun, Gudjonsson, Johann E., Liang, Liming, Stuart, Philip E., Li, Yun, Chen, Wei, Weichenthal, Michael, Ellinghaus, Eva, Franke, Andre, Cookson, William et al. · 2010 · The American Journal of Human Genetics
  13. The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation
    Li, Qin, Zheng, Sika, Han, Areum, Lin, Chia-Ho, Stoilov, Peter, Fu, Xiang-Dong, Black, Douglas L · 2014 · eLife
  14. Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors
    Grant, Gavin D., Brooks, Lionel, Zhang, Xiaoyang, Mahoney, J. Matthew, Martyanov, Viktor, Wood, Tammara A., Sherlock, Gavin, Cheng, Chao, Whitfield, Michael L. · 2013 · Molecular Biology of the Cell
  15. Chronic oxidative stress promotes H2AX protein degradation and enhances chemosensitivity in breast cancer patients
    Gruosso, Tina, Mieulet, Virginie, Cardon, Melissa, Bourachot, Brigitte, Kieffer, Yann, Devun, Flavien, Dubois, Thierry, Dutreix, Marie, Vincent‐Salomon, Anne, Miller, Kyle Malcolm et al. · 2016 · EMBO Molecular Medicine
  16. Misregulation of an Activity-Dependent Splicing Network as a Common Mechanism Underlying Autism Spectrum Disorders
    Quesnel-Vallières, Mathieu, Dargaei, Zahra, Irimia, Manuel, Gonatopoulos-Pournatzis, Thomas, Ip, Joanna Y., Wu, Mingkun, Sterne-Weiler, Timothy, Nakagawa, Shinichi, Woodin, Melanie A., Blencowe, Benjamin J. et al. · 2016 · Molecular Cell
  17. SLICE: determining cell differentiation and lineage based on single cell entropy
    Guo, Minzhe, Bao, Erik L., Wagner, Michael, Whitsett, Jeffrey A., Xu, Yan · 2016 · Nucleic Acids Research
  18. Epigenetic and inflammatory marker profiles associated with depression in a community-based epidemiologic sample
    Uddin, M., Koenen, K. C., Aiello, A. E., Wildman, D. E., de los Santos, R., Galea, S. · 2011 · Psychological Medicine
  19. A proteo-transcriptomic map of non-alcoholic fatty liver disease signatures
    Govaere, Olivier, Hasoon, Megan, Alexander, Leigh, Cockell, Simon, Tiniakos, Dina, Ekstedt, Mattias, Schattenberg, Jörn M., Boursier, Jerome, Bugianesi, Elisabetta, Ratziu, Vlad et al. · 2023 · Nature Metabolism
  20. Exercise alters mouse sperm small noncoding RNAs and induces a transgenerational modification of male offspring conditioned fear and anxiety
    Short, A K, Yeshurun, S, Powell, R, Perreau, V M, Fox, A, Kim, J H, Pang, T Y, Hannan, A J · 2017 · Translational Psychiatry
  21. ChIP-Enrich: gene set enrichment testing for ChIP-seq data
    Welch, Ryan P., Lee, Chee, Imbriano, Paul M., Patil, Snehal, Weymouth, Terry E., Smith, R. Alex, Scott, Laura J., Sartor, Maureen A. · 2014 · Nucleic Acids Research
  22. Proteomic analysis of age-dependent changes in protein solubility identifies genes that modulate lifespan
    Reis‐Rodrigues, Pedro, Czerwieniec, Gregg, Peters, Theodore W., Evani, Uday S., Alavez, Silvestre, Gaman, Emily A., Vantipalli, Maithili, Mooney, Sean D., Gibson, Bradford W., Lithgow, Gordon J. et al. · 2012 · Aging Cell
  23. A Prader–Willi locus lncRNA cloud modulates diurnal genes and energy expenditure
    Powell, Weston T., Coulson, Rochelle L., Crary, Florence K., Wong, Spencer S., Ach, Robert A., Tsang, Peter, Alice Yamada, N., Yasui, Dag H., LaSalle, Janine M. · 2013 · Human Molecular Genetics
  24. Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction
    Genshaft, Alex S, Li, Shuqiang, Gallant, Caroline J., Darmanis, Spyros, Prakadan, Sanjay M., Ziegler, Carly G. K., Lundberg, Martin, Fredriksson, Simon, Hong, Joyce, Regev, Aviv et al. · 2016 · Genome Biology
  25. Accelerated Recruitment of New Brain Development Genes into the Human Genome
    Zhang, Yong E., Landback, Patrick, Vibranovski, Maria D., Long, Manyuan · 2011 · PLoS Biology
  26. 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence
    Sati, Satish, Bonev, Boyan, Szabo, Quentin, Jost, Daniel, Bensadoun, Paul, Serra, Francois, Loubiere, Vincent, Papadopoulos, Giorgio Lucio, Rivera-Mulia, Juan-Carlos, Fritsch, Lauriane et al. · 2020 · Molecular Cell
  27. Mechanical control of innate immune responses against viral infection revealed in a human lung alveolus chip
    Bai, Haiqing, Si, Longlong, Jiang, Amanda, Belgur, Chaitra, Zhai, Yunhao, Plebani, Roberto, Oh, Crystal Yuri, Rodas, Melissa, Patil, Aditya, Nurani, Atiq et al. · 2022 · Nature Communications
  28. Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21
    Hibaoui, Youssef, Grad, Iwona, Letourneau, Audrey, Sailani, M Reza, Dahoun, Sophie, Santoni, Federico A, Gimelli, Stefania, Guipponi, Michel, Pelte, Marie Françoise, Béna, Frédérique et al. · 2014 · EMBO Molecular Medicine
  29. Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia
    Klaus, Johannes, Kanton, Sabina, Kyrousi, Christina, Ayo-Martin, Ane Cristina, Di Giaimo, Rossella, Riesenberg, Stephan, O’Neill, Adam C., Camp, J. Gray, Tocco, Chiara, Santel, Malgorzata et al. · 2019 · Nature Medicine
  30. Iron drives T helper cell pathogenicity by promoting RNA-binding protein PCBP1-mediated proinflammatory cytokine production
    Wang, Zhizhang, Yin, Weijie, Zhu, Lizhen, Li, Jia, Yao, Yikun, Chen, Feifei, Sun, Mengmeng, Zhang, Jiayuan, Shen, Nan, Song, Yan et al. · 2018 · Immunity
  31. C1q-induced LRP1B and GPR6 Proteins Expressed Early in Alzheimer Disease Mouse Models, Are Essential for the C1q-mediated Protection against Amyloid-β Neurotoxicity
    Benoit, Marie E., Hernandez, Michael X., Dinh, Minhan L., Benavente, Francisca, Vasquez, Osvaldo, Tenner, Andrea J. · 2013 · Journal of Biological Chemistry
  32. Commensal microbe-derived acetate suppresses NAFLD/NASH development via hepatic FFAR2 signalling in mice
    Aoki, Ryo, Onuki, Masayoshi, Hattori, Koya, Ito, Masato, Yamada, Takahiro, Kamikado, Kohei, Kim, Yun-Gi, Nakamoto, Nobuhiro, Kimura, Ikuo, Clarke, Julie M. et al. · 2021 · Microbiome
  33. Greater muscle protein synthesis and mitochondrial biogenesis in males compared with females during sprint interval training
    Scalzo, Rebecca L., Peltonen, Garrett L., Binns, Scott E., Shankaran, Mahalakshmi, Giordano, Gregory R., Hartley, Dylan A., Klochak, Anna L., Lonac, Mark C., Paris, Hunter L. R., Szallar, Steve E. et al. · 2014 · The FASEB Journal
  34. Tau exacerbates excitotoxic brain damage in an animal model of stroke
    Bi, Mian, Gladbach, Amadeus, van Eersel, Janet, Ittner, Arne, Przybyla, Magdalena, van Hummel, Annika, Chua, Sook Wern, van der Hoven, Julia, Lee, Wei S., Müller, Julius et al. · 2017 · Nature Communications
  35. Identification and Application of Gene Expression Signatures Associated with Lifespan Extension
    Tyshkovskiy, Alexander, Bozaykut, Perinur, Borodinova, Anastasia A., Gerashchenko, Maxim V., Ables, Gene P., Garratt, Michael, Khaitovich, Philipp, Clish, Clary B., Miller, Richard A., Gladyshev, Vadim N. · 2019 · Cell Metabolism
  36. Human Monocyte Subsets Are Transcriptionally and Functionally Altered in Aging in Response to Pattern Recognition Receptor Agonists
    Metcalf, Talibah U, Wilkinson, Peter A, Cameron, Mark J, Ghneim, Khader, Chiang, Cindy, Wertheimer, Anne M, Hiscott, John B, Nikolich-Zugich, Janko, Haddad, Elias K · 2017 · The Journal of Immunology
  37. Inhibition of HDAC8 and HDAC9 by microbial short-chain fatty acids breaks immune tolerance of the epidermis to TLR ligands
    Sanford, James A., Zhang, Ling-Juan, Williams, Michael R., Gangoiti, Jon A., Huang, Chun-Ming, Gallo, Richard L. · 2016 · Science Immunology
  38. Males Shorten the Life Span of <i>C. elegans</i> Hermaphrodites via Secreted Compounds
    Maures, Travis J., Booth, Lauren N., Benayoun, Bérénice A., Izrayelit, Yevgeniy, Schroeder, Frank C., Brunet, Anne · 2014 · Science
  39. Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells
    Menendez, Daniel, Nguyen, Thuy-Ai, Freudenberg, Johannes M., Mathew, Viju J., Anderson, Carl W., Jothi, Raja, Resnick, Michael A. · 2013 · Nucleic Acids Research
  40. Single-cell analysis reveals that stochasticity and paracrine signaling control interferon-alpha production by plasmacytoid dendritic cells
    Wimmers, Florian, Subedi, Nikita, van Buuringen, Nicole, Heister, Daan, Vivié, Judith, Beeren-Reinieren, Inge, Woestenenk, Rob, Dolstra, Harry, Piruska, Aigars, Jacobs, Joannes F. M. et al. · 2018 · Nature Communications
  41. A biochemical landscape of A-to-I RNA editing in the human brain transcriptome
    Sakurai, Masayuki, Ueda, Hiroki, Yano, Takanori, Okada, Shunpei, Terajima, Hideki, Mitsuyama, Toutai, Toyoda, Atsushi, Fujiyama, Asao, Kawabata, Hitomi, Suzuki, Tsutomu · 2014 · Genome Research
  42. mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortex
    Dillman, Allissa A, Hauser, David N, Gibbs, J Raphael, Nalls, Michael A, McCoy, Melissa K, Rudenko, Iakov N, Galter, Dagmar, Cookson, Mark R · 2013 · Nature Neuroscience
  43. The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genes
    Reddy, Timothy E., Gertz, Jason, Crawford, Gregory E., Garabedian, Michael J., Myers, Richard M. · 2012 · Molecular and Cellular Biology
  44. Stoichiometry of site-specific lysine acetylation in an entire proteome
    Baeza, Josue, Dowell, James A., Smallegan, Michael J., Fan, Jing, Amador-Noguez, Daniel, Khan, Zia, Denu, John M. · 2014 · Journal of Biological Chemistry
  45. The transcriptional response of the islet to pregnancy in mice
    Rieck, Sebastian, White, Peter, Schug, Jonathan, Fox, Alan J., Smirnova, Olga, Gao, Nan, Gupta, Rana K., Wang, Zhao V., Scherer, Philipp E., Keller, Mark P. et al. · 2009 · Molecular Endocrinology
  46. The pH-Responsive PacC Transcription Factor of Aspergillus fumigatus Governs Epithelial Entry and Tissue Invasion during Pulmonary Aspergillosis
    Bertuzzi, Margherita, Schrettl, Markus, Alcazar-Fuoli, Laura, Cairns, Timothy C., Muñoz, Alberto, Walker, Louise A., Herbst, Susanne, Safari, Maryam, Cheverton, Angela M., Chen, Dan et al. · 2014 · PLoS Pathogens
  47. Cholecalciferol (Vitamin D3) Improves Myelination and Recovery after Nerve Injury
    Chabas, Jean-Francois, Stephan, Delphine, Marqueste, Tanguy, Garcia, Stephane, Lavaut, Marie-Noelle, Nguyen, Catherine, Legre, Regis, Khrestchatisky, Michel, Decherchi, Patrick, Feron, Francois · 2013 · PLoS ONE
  48. FOXM1 drives proximal tubule proliferation during repair from acute ischemic kidney injury
    Chang-Panesso, Monica, Kadyrov, Farid F., Lalli, Matthew, Wu, Haojia, Ikeda, Shiyo, Kefaloyianni, Eirini, Abdelmageed, Mai M., Herrlich, Andreas, Kobayashi, Akio, Humphreys, Benjamin D. · 2019 · Journal of Clinical Investigation
  49. Schizophrenia is defined by cell-specific neuropathology and multiple neurodevelopmental mechanisms in patient-derived cerebral organoids
    Notaras, Michael, Lodhi, Aiman, Dündar, Friederike, Collier, Paul, Sayles, Nicole M., Tilgner, Hagen, Greening, David, Colak, Dilek · 2022 · Molecular Psychiatry
  50. Two gene co-expression modules differentiate psychotics and controls
    Chen, C, Cheng, L, Grennan, K, Pibiri, F, Zhang, C, Badner, J A, Members of the Bipolar Disorder Genome Study (BiGS) Consortium, Gershon, E S, Liu, C · 2013 · Molecular Psychiatry
  51. Neuronal mitochondria transport Pink1 mRNA via synaptojanin 2 to support local mitophagy
    Harbauer, Angelika B., Hees, J. Tabitha, Wanderoy, Simone, Segura, Inmaculada, Gibbs, Whitney, Cheng, Yiming, Ordonez, Martha, Cai, Zerong, Cartoni, Romain, Ashrafi, Ghazaleh et al. · 2022 · Neuron
  52. Scl Represses Cardiomyogenesis in Prospective Hemogenic Endothelium and Endocardium
    Van Handel, Ben, Montel-Hagen, Amélie, Sasidharan, Rajkumar, Nakano, Haruko, Ferrari, Roberto, Boogerd, Cornelis J., Schredelseker, Johann, Wang, Yanling, Hunter, Sean, Org, Tõnis et al. · 2012 · Cell
  53. Defining essential genes for human pluripotent stem cells by CRISPR–Cas9 screening in haploid cells
    Yilmaz, Atilgan, Peretz, Mordecai, Aharony, Aviram, Sagi, Ido, Benvenisty, Nissim · 2018 · Nature Cell Biology
  54. Autophagy regulates spermatid differentiation via degradation of PDLIM1
    Shang, Yongliang, Wang, Hongna, Jia, Pengfei, Zhao, Haichao, Liu, Chao, Liu, Weixiao, Song, Zhenhua, Xu, Zhiliang, Yang, Lin, Wang, Yanfang et al. · 2016 · Autophagy
  55. The transcription cofactor c-JUN mediates phenotype switching and BRAF inhibitor resistance in melanoma
    Ramsdale, Rachel, Jorissen, Robert N., Li, Frederic Z., Al-Obaidi, Sheren, Ward, Teresa, Sheppard, Karen E., Bukczynska, Patricia E., Young, Richard J., Boyle, Samantha E., Shackleton, Mark et al. · 2015 · Science Signaling
  56. Increased Risk of Genetic and Epigenetic Instability in Human Embryonic Stem Cells Associated with Specific Culture Conditions
    Garitaonandia, Ibon, Amir, Hadar, Boscolo, Francesca Sesillo, Wambua, Gerald K., Schultheisz, Heather L., Sabatini, Karen, Morey, Robert, Waltz, Shannon, Wang, Yu-Chieh, Tran, Ha et al. · 2015 · PLOS ONE
  57. In-depth analysis of the secretome identifies three major independent secretory pathways in differentiating human myoblasts
    Le Bihan, Marie-Catherine, Bigot, Anne, Jensen, Søren Skov, Dennis, Jayne L., Rogowska-Wrzesinska, Adelina, Lainé, Jeanne, Gache, Vincent, Furling, Denis, Jensen, Ole Nørregaard, Voit, Thomas et al. · 2012 · Journal of Proteomics
  58. Long-Term Pioglitazone Treatment Improves Learning and Attenuates Pathological Markers in a Mouse Model of Alzheimer's Disease
    Searcy, James L., Phelps, Jeremiah T., Pancani, Tristano, Kadish, Inga, Popovic, Jelena, Anderson, Katie L., Beckett, Tina L., Murphy, Michael P., Chen, Kuey-Chu, Blalock, Eric M. et al. · 2012 · Journal of Alzheimer's Disease
  59. Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets
    Zhu, Ying, Dou, Maowei, Piehowski, Paul D., Liang, Yiran, Wang, Fangjun, Chu, Rosalie K., Chrisler, William B., Smith, Jordan N., Schwarz, Kaitlynn C., Shen, Yufeng et al. · 2018 · Molecular &amp; Cellular Proteomics
  60. Gene expression profiling of A549 cells exposed to Milan PM2.5
    Gualtieri, Maurizio, Longhin, Eleonora, Mattioli, Michela, Mantecca, Paride, Tinaglia, Valentina, Mangano, Eleonora, Proverbio, Maria Carla, Bestetti, Giuseppina, Camatini, Marina, Battaglia, Cristina · 2012 · Toxicology Letters
  61. Differential effector engagement by oncogenic KRAS
    Yuan, Tina L., Amzallag, Arnaud, Bagni, Rachel, Yi, Ming, Afghani, Shervin, Burgan, William, Fer, Nicole, Strathern, Leslie A., Powell, Katie, Smith, Brian et al. · 2018 · Cell Reports
  62. Heme drives hemolysis-induced susceptibility to infection via disruption of phagocyte functions
    Martins, Rui, Maier, Julia, Gorki, Anna-Dorothea, Huber, Kilian V M, Sharif, Omar, Starkl, Philipp, Saluzzo, Simona, Quattrone, Federica, Gawish, Riem, Lakovits, Karin et al. · 2016 · Nature Immunology
  63. A cell-autonomous mammalian 12 hr clock coordinates metabolic and stress rhythms
    Zhu, Bokai, Zhang, Qiang, Pan, Yinghong, Mace, Emily M., York, Brian, Antoulas, Athanasios C., Dacso, Clifford C., O’Malley, Bert W. · 2017 · Cell Metabolism
  64. Genes Affecting Vocal and Facial Anatomy Went Through Extensive Regulatory Divergence in Modern Humans
    Gokhman, David, Nissim-Rafinia, Malka, Agranat-Tamir, Lily, Housman, Genevieve, García-Pérez, Raquel, Lizano, Esther, Cheronet, Olivia, Mallick, Swapan, Nieves-Colón, Maria A., Li, Heng et al. · 2017
  65. Networks of Neuronal Genes Affected by Common and Rare Variants in Autism Spectrum Disorders
    Ben-David, Eyal, Shifman, Sagiv · 2012 · PLoS Genetics
  66. Blood orange juice inhibits fat accumulation in mice
    Titta, L, Trinei, M, Stendardo, M, Berniakovich, I, Petroni, K, Tonelli, C, Riso, P, Porrini, M, Minucci, S, Pelicci, P G et al. · 2010 · International Journal of Obesity
  67. Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families
    Blumenthal, Ian, Ragavendran, Ashok, Erdin, Serkan, Klei, Lambertus, Sugathan, Aarathi, Guide, Jolene R., Manavalan, Poornima, Zhou, Julian Q., Wheeler, Vanessa C., Levin, Joshua Z. et al. · 2014 · The American Journal of Human Genetics
  68. Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states
    Pham, Thu-Hang, Benner, Christopher, Lichtinger, Monika, Schwarzfischer, Lucia, Hu, Yuhui, Andreesen, Reinhard, Chen, Wei, Rehli, Michael · 2012 · Blood
  69. Self-organization process in newborn skin organoid formation inspires strategy to restore hair regeneration of adult cells
    Lei, Mingxing, Schumacher, Linus J., Lai, Yung-Chih, Juan, Wen-Tau, Yeh, Chao-Yuan, Wu, Ping, Jiang, Ting-Xin, Baker, Ruth E., Widelitz, Randall Bruce, Yang, Li et al. · 2017 · Proceedings of the National Academy of Sciences
  70. Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer
    Buqué, Aitziber, Bloy, Norma, Perez-Lanzón, Maria, Iribarren, Kristina, Humeau, Juliette, Pol, Jonathan G., Levesque, Sarah, Mondragon, Laura, Yamazaki, Takahiro, Sato, Ai et al. · 2020 · Nature Communications
  71. Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development
    Vallecillo-García, Pedro, Orgeur, Mickael, vom Hofe-Schneider, Sophie, Stumm, Jürgen, Kappert, Verena, Ibrahim, Daniel M., Börno, Stefan T., Hayashi, Shinichiro, Relaix, Frédéric, Hildebrandt, Katrin et al. · 2017 · Nature Communications
  72. FoxM1 repression during human aging leads to mitotic decline and aneuploidy-driven full senescence
    Macedo, Joana Catarina, Vaz, Sara, Bakker, Bjorn, Ribeiro, Rui, Bakker, Petra Lammigje, Escandell, Jose Miguel, Ferreira, Miguel Godinho, Medema, René, Foijer, Floris, Logarinho, Elsa · 2018 · Nature Communications
  73. Large Scale Gene Expression Meta-Analysis Reveals Tissue-Specific, Sex-Biased Gene Expression in Humans
    Mayne, Benjamin T., Bianco-Miotto, Tina, Buckberry, Sam, Breen, James, Clifton, Vicki, Shoubridge, Cheryl, Roberts, Claire T. · 2016 · Frontiers in Genetics
  74. Combined Mutation of <i>Apc, Kras</i> , and <i>Tgfbr2</i> Effectively Drives Metastasis of Intestinal Cancer
    Sakai, Eri, Nakayama, Mizuho, Oshima, Hiroko, Kouyama, Yuta, Niida, Atsushi, Fujii, Satoshi, Ochiai, Atsushi, Nakayama, Keiichi I., Mimori, Koshi, Suzuki, Yutaka et al. · 2018 · Cancer Research
  75. Histone deacetylase (HDAC) 1 and 2 complexes regulate both histone acetylation and crotonylation in vivo
    Kelly, R. D. W., Chandru, A., Watson, P. J., Song, Y., Blades, M., Robertson, N. S., Jamieson, A. G., Schwabe, J. W. R., Cowley, S. M. · 2018 · Scientific Reports
  76. Identification of neurodegenerative factors using translatome–regulatory network analysis
    Brichta, Lars, Shin, William, Jackson-Lewis, Vernice, Blesa, Javier, Yap, Ee-Lynn, Walker, Zachary, Zhang, Jack, Roussarie, Jean-Pierre, Alvarez, Mariano J, Califano, Andrea et al. · 2015 · Nature Neuroscience
  77. A structure-informed atlas of human-virus interactions
    Lasso, Gorka, Mayer, Sandra V., Winkelmann, Evandro R., Chu, Tim, Elliot, Oliver, Patino-Galindo, Juan Angel, Park, Kernyu, Rabadan, Raul, Honig, Barry, Shapira, Sagi D. · 2019 · Cell
  78. Microarray analyses to quantify advantages of 2D and 3D hydrogel culture systems in maintaining the native valvular interstitial cell phenotype
    Mabry, Kelly M., Payne, Samuel Z., Anseth, Kristi S. · 2016 · Biomaterials
  79. Integration of metabolic and gene regulatory networks modulates the C. elegans dietary response
    Watson, Emma, MacNeil, Lesley T., Arda, H. Efsun, Zhu, Lihua Julie, Walhout, Albertha J.M. · 2013 · Cell
  80. Identification of a CpG Island Methylator Phenotype in Adrenocortical Carcinomas
    Barreau, Olivia, Assié, Guillaume, Wilmot-Roussel, Hortense, Ragazzon, Bruno, Baudry, Camille, Perlemoine, Karine, René-Corail, Fernande, Bertagna, Xavier, Dousset, Bertrand, Hamzaoui, Nadim et al. · 2013 · The Journal of Clinical Endocrinology &amp; Metabolism
  81. Cholera toxin promotes pathogen acquisition of host-derived nutrients
    Rivera-Chávez, Fabian, Mekalanos, John J. · 2019 · Nature
  82. A gene toolbox for monitoring autophagy transcription
    Bordi, Matteo, De Cegli, Rossella, Testa, Beatrice, Nixon, Ralph A., Ballabio, Andrea, Cecconi, Francesco · 2021 · Cell Death &amp; Disease
  83. The Osteoblast to Osteocyte Transition: Epigenetic Changes and Response to the Vitamin D<sub>3</sub>Hormone
    St. John, Hillary C., Bishop, Kathleen A., Meyer, Mark B., Benkusky, Nancy A., Leng, Ning, Kendziorski, Christina, Bonewald, Lynda F., Pike, J. Wesley · 2014 · Molecular Endocrinology
  84. Immune Activation in Retinal Aging: A Gene Expression Study
    Chen, Mei, Muckersie, Elizabeth, Forrester, John V., Xu, Heping · 2010 · Investigative Opthalmology &amp; Visual Science
  85. Prolonged sleep restriction induces changes in pathways involved in cholesterol metabolism and inflammatory responses
    Aho, Vilma, Ollila, Hanna M., Kronholm, Erkki, Bondia-Pons, Isabel, Soininen, Pasi, Kangas, Antti J., Hilvo, Mika, Seppälä, Ilkka, Kettunen, Johannes, Oikonen, Mervi et al. · 2016 · Scientific Reports
  86. Canine osteosarcoma genome sequencing identifies recurrent mutations in DMD and the histone methyltransferase gene SETD2
    Gardner, Heather L., Sivaprakasam, Karthigayini, Briones, Natalia, Zismann, Victoria, Perdigones, Nieves, Drenner, Kevin, Facista, Salvatore, Richholt, Ryan, Liang, Winnie, Aldrich, Jessica et al. · 2019 · Communications Biology
  87. Functional Genomic Analyses Identify Pathways Dysregulated by Progranulin Deficiency, Implicating Wnt Signaling
    Rosen, Ezra Y., Wexler, Eric M., Versano, Revital, Coppola, Giovanni, Gao, Fuying, Winden, Kellen D., Oldham, Michael C., Martens, Lauren Herl, Zhou, Ping, Farese, Robert V. et al. · 2011 · Neuron
  88. Minimal PU.1 reduction induces a preleukemic state and promotes development of acute myeloid leukemia
    Will, Britta, Vogler, Thomas O, Narayanagari, Swathi, Bartholdy, Boris, Todorova, Tihomira I, da Silva Ferreira, Mariana, Chen, Jiahao, Yu, Yiting, Mayer, Jillian, Barreyro, Laura et al. · 2015 · Nature Medicine
  89. E2F7 represses a network of oscillating cell cycle genes to control S-phase progression
    Westendorp, Bart, Mokry, Michal, Groot Koerkamp, Marian J.A., Holstege, Frank C.P., Cuppen, Edwin, de Bruin, Alain · 2012 · Nucleic Acids Research
  90. Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter
    Barker, Bridget M, Kroll, Kristin, Vödisch, Martin, Mazurie, Aurélien, Kniemeyer, Olaf, Cramer, Robert A · 2012 · BMC Genomics
  91. Proteome response of Phaeodactylum tricornutum , during lipid accumulation induced by nitrogen depletion
    Longworth, Joseph, Wu, Danying, Huete-Ortega, María, Wright, Phillip C., Vaidyanathan, Seetharaman · 2016 · Algal Research
  92. Trem2 deletion enhances tau dispersion and pathology through microglia exosomes
    Zhu, Bing, Liu, Yan, Hwang, Spring, Archuleta, Kailey, Huang, Huijie, Campos, Alex, Murad, Rabi, Piña-Crespo, Juan, Xu, Huaxi, Huang, Timothy Y. · 2022 · Molecular Neurodegeneration
  93. Deficiency of TYROBP, an adapter protein for TREM2 and CR3 receptors, is neuroprotective in a mouse model of early Alzheimer’s pathology
    Haure-Mirande, Jean-Vianney, Audrain, Mickael, Fanutza, Tomas, Kim, Soong Ho, Klein, William L., Glabe, Charles, Readhead, Ben, Dudley, Joel T., Blitzer, Robert D., Wang, Minghui et al. · 2017 · Acta Neuropathologica
  94. MiR-146a Negatively Regulates TLR2-Induced Inflammatory Responses in Keratinocytes
    Meisgen, Florian, Xu Landén, Ning, Wang, Aoxue, Réthi, Bence, Bouez, Charbel, Zuccolo, Michela, Gueniche, Audrey, Ståhle, Mona, Sonkoly, Enikö, Breton, Lionel et al. · 2014 · Journal of Investigative Dermatology
  95. Chromosomal contacts connect loci associated with autism, BMI and head circumference phenotypes
    2p15 Consortium, Loviglio, M N, 16p11.2 Consortium, Leleu, M, Männik, K, Passeggeri, M, Giannuzzi, G, van der Werf, I, Waszak, S M, Zazhytska, M et al. · 2017 · Molecular Psychiatry
  96. DNA Methylation Patterns Separate Senescence from Transformation Potential and Indicate Cancer Risk
    Xie, Wenbing, Kagiampakis, Ioannis, Pan, Lixia, Zhang, Yang W., Murphy, Lauren, Tao, Yong, Kong, Xiangqian, Kang, Byunghak, Xia, Limin, Carvalho, Filipe L.F. et al. · 2018 · Cancer Cell
  97. Deep proteome analysis identifies age-related processes in C. elegans
    Narayan, Vikram, Ly, Tony, Pourkarimi, Ehsan, Murillo, Alejandro Brenes, Gartner, Anton, Lamond, Angus I., Kenyon, Cynthia · 2016 · Cell Systems
  98. CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function
    Wagnon, Jacy L., Briese, Michael, Sun, Wenzhi, Mahaffey, Connie L., Curk, Tomaž, Rot, Gregor, Ule, Jernej, Frankel, Wayne N. · 2012 · PLoS Genetics
  99. GeneFriends: a human RNA-seq-based gene and transcript co-expression database
    van Dam, Sipko, Craig, Thomas, de Magalhães, João Pedro · 2015 · Nucleic Acids Research
  100. Systems‐wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation
    Satpathy, Shankha, Wagner, Sebastian A, Beli, Petra, Gupta, Rajat, Kristiansen, Trine A, Malinova, Dessislava, Francavilla, Chiara, Tolar, Pavel, Bishop, Gail A, Hostager, Bruce S et al. · 2015 · Molecular Systems Biology