Cited by 1,459CRISPR and Genetic EngineeringRNA regulation and diseaseCAR-T cell therapy research

The next generation of CRISPR–Cas technologies and applications

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Pickar-Oliver, Adrian, Gersbach, Charles A.·2019·Nature Reviews Molecular Cell Biology

Abstract

The prokaryote-derived CRISPR-Cas genome editing systems have transformed our ability to manipulate, detect, image and annotate specific DNA and RNA sequences in living cells of diverse species. The ease of use and robustness of this technology have revolutionized genome editing for research ranging from fundamental science to translational medicine. Initial successes have inspired efforts to discover new systems for targeting and manipulating nucleic acids, including those from Cas9, Cas12, Cascade and Cas13 orthologues. Genome editing by CRISPR-Cas can utilize non-homologous end joining and homology-directed repair for DNA repair, as well as single-base editing enzymes. In addition to targeting DNA, CRISPR-Cas-based RNA-targeting tools are being developed for research, medicine and diagnostics. Nuclease-inactive and RNA-targeting Cas proteins have been fused to a plethora of effector proteins to regulate gene expression, epigenetic modifications and chromatin interactions. Collectively, the new advances are considerably improving our understanding of biological processes and are propelling CRISPR-Cas-based tools towards clinical use in gene and cell therapies.

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  • Several Cas variants, such as Cas12 and Cas13, have been developed to enhance DNA cleavage and expand genome editing versatility.

    “In recent years, several Cas variants, such as Cas12 and Cas13, have been developed to enhance DNA cleavage and expand genome editing versatility [7,8].”

    From Precise CRISPR/Cas9 and Cas12 Correction Using Lipoplexes in Retinal Models Derived from Patients with Inherited Retinal Dystrophies (2026) · cites this paper as [7]

    The 'Broader targeting capacity' section says Cas12a cuts DNA and that engineered variants improve its genome-editing activity and targeting range. But the 'Cas13' section describes Cas13 as an RNA-targeting nuclease, not a variant developed to enhance DNA cleavage. The claim therefore overextends a DNA-cleavage benefit to Cas13. (LLM, conf=0.88)

    Experimental — accuracy not yet measured

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  1. [1]Danna K & Nathans D Specific cleavage of simian virus 40 DNA by restriction endonuclease of Hemophilus influenzae. Proc Natl Acad Sci U S A 68, 2913– 2917 (1971). 4332003 PMC389558
  2. [2]Roberts RJ How restriction enzymes became the workhorses of molecular biology. Proc Natl Acad Sci U S A 102, 5905– 5908, doi: 10.1073/pnas.0500923102 (2005). 15840723 PMC1087929 · DOI
  3. [3]Olorunniji FJ, Rosser SJ & Stark WM Site-specific recombinases: molecular machines for the Genetic Revolution. Biochem J 473, 673– 684, doi: 10.1042/BJ20151112 (2016). 26965385 · DOI
  4. [4]Chandrasegaran S & Carroll D Origins of Programmable Nucleases for Genome Engineering. J Mol Biol 428, 963– 989, doi: 10.1016/j.jmb.2015.10.014 (2016). 26506267 PMC4798875 · DOI
  5. [5]Barrangou R CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709– 1712, doi: 10.1126/science.1138140 (2007). 17379808 · DOI
  6. [6]Makarova KS An updated evolutionary classification of CRISPR-Cas systems. Nat Rev Microbiol 13, 722– 736, doi: 10.1038/nrmicro3569 (2015). 26411297 PMC5426118 · DOI
  7. [7]Shmakov S Diversity and evolution of class 2 CRISPR-Cas systems. Nat Rev Microbiol 15, 169– 182, doi: 10.1038/nrmicro.2016.184 (2017). 28111461 PMC5851899 · DOI
  8. [9]Hsu PD, Lander ES & Zhang F Development and applications of CRISPR-Cas9 for genome engineering. Cell 157, 1262– 1278, doi: 10.1016/j.cell.2014.05.010 (2014). 24906146 PMC4343198 · DOI · Paper page
  9. [12]Mali P RNA-guided human genome engineering via Cas9. Science 339, 823– 826, doi: 10.1126/science.1232033 (2013). 23287722 PMC3712628 · DOI · Paper page
  10. [13]Garneau JE The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468, 67– 71, doi: 10.1038/nature09523 (2010). 21048762 · DOI
  11. [14]Mojica FJ, Diez-Villasenor C, Garcia-Martinez J & Almendros C Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155, 733– 740, doi: 10.1099/mic.0.023960-0 (2009). 19246744 · DOI
  12. [15]Deltcheva E CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471, 602– 607, doi: 10.1038/nature09886 (2011). 21455174 PMC3070239 · DOI · Paper page
  13. [16]Gasiunas G, Barrangou R, Horvath P & Siksnys V Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci U S A 109, E2579– 2586, doi: 10.1073/pnas.1208507109 (2012). 22949671 PMC3465414 · DOI · Paper page
  14. [18]Hu JH Evolved Cas9 variants with broad PAM compatibility and high DNA specificity. Nature 556, 57– 63, doi: 10.1038/nature26155 (2018). 29512652 PMC5951633 · DOI · Paper page
  15. [19]Slaymaker IM Rationally engineered Cas9 nucleases with improved specificity. Science 351, 84– 88, doi: 10.1126/science.aad5227 (2016). 26628643 PMC4714946 · DOI · Paper page
  16. [20]Kleinstiver BP High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature 529, 490– 495, doi: 10.1038/nature16526 (2016). 26735016 PMC4851738 · DOI · Paper page
  17. [21]Chen JS Enhanced proofreading governs CRISPR-Cas9 targeting accuracy. Nature 550, 407– 410, doi: 10.1038/nature24268 (2017). 28931002 PMC5918688 · DOI · Paper page
  18. [24]Kocak DD Increasing the specificity of CRISPR systems with engineered RNA secondary structures. Nat Biotechnol, doi: 10.1038/s41587-019-0095-1 (2019). PMC6626619 30988504 · DOI · Paper page
  19. [25]Deveau H Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 190, 1390– 1400, doi: 10.1128/JB.01412-07 (2008). 18065545 PMC2238228 · DOI
  20. [26]Esvelt KM Orthogonal Cas9 proteins for RNA-guided gene regulation and editing. Nat Methods 10, 1116– 1121, doi: 10.1038/nmeth.2681 (2013). 24076762 PMC3844869 · DOI · Paper page
  21. [27]Zhang Y Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. Mol Cell 50, 488– 503, doi: 10.1016/j.molcel.2013.05.001 (2013). 23706818 PMC3694421 · DOI
  22. [28]Hou Z Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis. Proc Natl Acad Sci U S A 110, 15644– 15649, doi: 10.1073/pnas.1313587110 (2013). 23940360 PMC3785731 · DOI · Paper page
  23. [30]Yamada M Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems. Mol Cell 65, 1109– 1121.e1103, doi: 10.1016/j.molcel.2017.02.007 (2017). 28306506 · DOI
  24. [31]Kim E In vivo genome editing with a small Cas9 orthologue derived from Campylobacter jejuni. Nat Commun 8, 14500, doi: 10.1038/ncomms14500 (2017). 28220790 PMC5473640 · DOI · Paper page
  25. [32]Burstein D New CRISPR-Cas systems from uncultivated microbes. Nature 542, 237– 241, doi: 10.1038/nature21059 (2017). 28005056 PMC5300952 · DOI
  26. [33]Zetsche B Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell 163, 759– 771, doi: 10.1016/j.cell.2015.09.038 (2015). 26422227 PMC4638220 · DOI
  27. [34]Zetsche B Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array. Nat Biotechnol 35, 31– 34, doi: 10.1038/nbt.3737 (2017). 27918548 PMC5225075 · DOI · Paper page
  28. [35]Kleinstiver BP Engineered CRISPR–Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing. Nat Biotechnol, doi: 10.1038/s41587-018-0011-0 (2019). PMC6401248 30742127 · DOI
  29. [36]Gao L Engineered Cpf1 variants with altered PAM specificities. Nat Biotechnol 35, 789– 792, doi: 10.1038/nbt.3900 (2017). 28581492 PMC5548640 · DOI · Paper page
  30. [37]Jore MM Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat Struct Mol Biol 18, 529– 536, doi: 10.1038/nsmb.2019 (2011). 21460843 · DOI
  31. [38]Westra ER CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 46, 595– 605, doi: 10.1016/j.molcel.2012.03.018 (2012). 22521689 PMC3372689 · DOI
  32. [39]Hochstrasser ML CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference. Proc Natl Acad Sci U S A 111, 6618– 6623, doi: 10.1073/pnas.1405079111 (2014). 24748111 PMC4020112 · DOI
  33. [40]Brendel J A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii. J Biol Chem 289, 7164– 7177, doi: 10.1074/jbc.M113.508184 (2014). 24459147 PMC3945376 · DOI
  34. [41]Richter C, Gristwood T, Clulow JS & Fineran PC In vivo protein interactions and complex formation in the Pectobacterium atrosepticum subtype I-F CRISPR/Cas System. PLoS One 7, e49549, doi: 10.1371/journal.pone.0049549 (2012). 23226499 PMC3513311 · DOI
  35. [42]Wiedenheft B RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions. Proc Natl Acad Sci U S A 108, 10092– 10097, doi: 10.1073/pnas.1102716108 (2011). 21536913 PMC3121849 · DOI
  36. [43]Hayes RP Structural basis for promiscuous PAM recognition in type I-E Cascade from E. coli. Nature 530, 499– 503, doi: 10.1038/nature16995 (2016). 26863189 PMC5134256 · DOI
  37. [44]Sinkunas T Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J 30, 1335– 1342, doi: 10.1038/emboj.2011.41 (2011). 21343909 PMC3094125 · DOI
  38. [45]Jackson RN, Lavin M, Carter J & Wiedenheft B Fitting CRISPR-associated Cas3 into the helicase family tree. Curr Opin Struct Biol 24, 106– 114, doi: 10.1016/j.sbi.2014.01.001 (2014). 24480304 PMC3984625 · DOI
  39. [46]Gomaa AA Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems. MBio 5, e00928– 00913, doi: 10.1128/mBio.00928-13 (2014). 24473129 PMC3903277 · DOI
  40. [47]Haurwitz RE, Jinek M, Wiedenheft B, Zhou K & Doudna JA Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 329, 1355– 1358, doi: 10.1126/science.1192272 (2010). 20829488 PMC3133607 · DOI
  41. [48]Nissim L, Perli SD, Fridkin A, Perez-Pinera P & Lu TK Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol Cell 54, 698– 710, doi: 10.1016/j.molcel.2014.04.022 (2014). 24837679 PMC4077618 · DOI
  42. [49]Tsai SQ Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing. Nat Biotechnol 32, 569– 576, doi: 10.1038/nbt.2908 (2014). 24770325 PMC4090141 · DOI · Paper page
  43. [50]Wyman C & Kanaar R DNA double-strand break repair: all's well that ends well. Annu Rev Genet 40, 363– 383, doi: 10.1146/annurev.genet.40.110405.090451 (2006). 16895466 · DOI
  44. [51]Lin S, Staahl BT, Alla RK & Doudna JA Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery. Elife 3, e04766, doi: 10.7554/eLife.04766 (2014). 25497837 PMC4383097 · DOI · Paper page
  45. [52]Pinder J, Salsman J & Dellaire G Nuclear domain 'knock-in' screen for the evaluation and identification of small molecule enhancers of CRISPR-based genome editing. Nucleic Acids Res 43, 9379– 9392, doi: 10.1093/nar/gkv993 (2015). 26429972 PMC4627099 · DOI
  46. [53]Song J RS-1 enhances CRISPR/Cas9- and TALEN-mediated knock-in efficiency. Nat Commun 7, 10548, doi: 10.1038/ncomms10548 (2016). 26817820 PMC4738357 · DOI
  47. [54]Gutschner T, Haemmerle M, Genovese G, Draetta GF & Chin L Post-translational Regulation of Cas9 during G1 Enhances Homology-Directed Repair. Cell Rep 14, 1555– 1566, doi: 10.1016/j.celrep.2016.01.019 (2016). 26854237 · DOI
  48. [55]Aird EJ, Lovendahl KN, St Martin A, Harris RS & Gordon WR Increasing Cas9-mediated homology-directed repair efficiency through covalent tethering of DNA repair template. Communications biology 1, 54, doi: 10.1038/s42003-018-0054-2 (2018). 30271937 PMC6123678 · DOI
  49. [57]Ran FA Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell 154, 1380– 1389, doi: 10.1016/j.cell.2013.08.021 (2013). 23992846 PMC3856256 · DOI · Paper page
  50. [58]Zhu S Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library. Nat Biotechnol 34, 1279– 1286, doi: 10.1038/nbt.3715 (2016). 27798563 PMC5592164 · DOI
  51. [59]Essletzbichler P Megabase-scale deletion using CRISPR/Cas9 to generate a fully haploid human cell line. Genome Res 24, 2059– 2065, doi: 10.1101/gr.177220.114 (2014). 25373145 PMC4248322 · DOI
  52. [60]Canver MC Characterization of genomic deletion efficiency mediated by clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells. J Biol Chem 289, 21312– 21324, doi: 10.1074/jbc.M114.564625 (2014). 24907273 PMC4118095 · DOI
  53. [61]Xiao A Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish. Nucleic Acids Res 41, e141, doi: 10.1093/nar/gkt464 (2013). 23748566 PMC3737551 · DOI
  54. [62]Zhou J Dual sgRNAs facilitate CRISPR/Cas9-mediated mouse genome targeting. FEBS J 281, 1717– 1725, doi: 10.1111/febs.12735 (2014). 24494965 · DOI
  55. [63]Yang H One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell 154, 1370– 1379, doi: 10.1016/j.cell.2013.08.022 (2013). 23992847 PMC3961003 · DOI · Paper page
  56. [64]Kraft K Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice. Cell Rep 10, 833– 839 (2015). 25660031
  57. [65]Suzuki K In vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration. Nature 540, 144– 149, doi: 10.1038/nature20565 (2016). 27851729 PMC5331785 · DOI · Paper page
  58. [66]Lackner DH A generic strategy for CRISPR-Cas9-mediated gene tagging. Nat Commun 6, 10237, doi: 10.1038/ncomms10237 (2015). 26674669 PMC4703899 · DOI
  59. [67]Schmid-Burgk JL, Honing K, Ebert TS & Hornung V CRISPaint allows modular base-specific gene tagging using a ligase-4-dependent mechanism. Nat Commun 7, 12338, doi: 10.1038/ncomms12338 (2016). 27465542 PMC4974478 · DOI
  60. [68]Leonetti MD, Sekine S, Kamiyama D, Weissman JS & Huang B A scalable strategy for high-throughput GFP tagging of endogenous human proteins. Proc Natl Acad Sci U S A 113, E3501– 3508, doi: 10.1073/pnas.1606731113 (2016). 27274053 PMC4922190 · DOI
  61. [70]Platt RJ CRISPR-Cas9 knockin mice for genome editing and cancer modeling. Cell 159, 440– 455, doi: 10.1016/j.cell.2014.09.014 (2014). 25263330 PMC4265475 · DOI · Paper page
  62. [71]Quadros RM Easi-CRISPR: a robust method for one-step generation of mice carrying conditional and insertion alleles using long ssDNA donors and CRISPR ribonucleoproteins. Genome Biol 18, 92, doi: 10.1186/s13059-017-1220-4 (2017). 28511701 PMC5434640 · DOI
  63. [73]Kwart D, Paquet D, Teo S & Tessier-Lavigne M Precise and efficient scarless genome editing in stem cells using CORRECT. Nat Protoc 12, 329– 354, doi: 10.1038/nprot.2016.171 (2017). 28102837 · DOI
  64. [74]Choi PS & Meyerson M Targeted genomic rearrangements using CRISPR/Cas technology. Nat Commun 5, 3728, doi: 10.1038/ncomms4728 (2014). 24759083 PMC4170920 · DOI
  65. [75]Torres R Engineering human tumour-associated chromosomal translocations with the RNA-guided CRISPR-Cas9 system. Nat Commun 5, 3964, doi: 10.1038/ncomms4964 (2014). 24888982 · DOI
  66. [77]Haapaniemi E, Botla S, Persson J, Schmierer B & Taipale J CRISPR-Cas9 genome editing induces a p53-mediated DNA damage response. Nat Med 24, 927– 930, doi: 10.1038/s41591-018-0049-z (2018). 29892067 · DOI · Paper page
  67. [78]Ihry RJ p53 inhibits CRISPR-Cas9 engineering in human pluripotent stem cells. Nat Med 24, 939– 946, doi: 10.1038/s41591-018-0050-6 (2018). 29892062 · DOI · Paper page
  68. [81]Ma Y Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells. Nat Methods 13, 1029– 1035, doi: 10.1038/nmeth.4027 (2016). 27723754 · DOI
  69. [82]Kim K Highly efficient RNA-guided base editing in mouse embryos. Nat Biotechnol 35, 435– 437, doi: 10.1038/nbt.3816 (2017). 28244995 · DOI
  70. [83]Rees HA Improving the DNA specificity and applicability of base editing through protein engineering and protein delivery. Nat Commun 8, 15790, doi: 10.1038/ncomms15790 (2017). 28585549 PMC5467206 · DOI
  71. [84]Rossidis AC In utero CRISPR-mediated therapeutic editing of metabolic genes. Nat Med 24, 1513– 1518, doi: 10.1038/s41591-018-0184-6 (2018). 30297903 PMC6249685 · DOI · Paper page
  72. [85]Liang P Correction of beta-thalassemia mutant by base editor in human embryos. Protein Cell 8, 811– 822, doi: 10.1007/s13238-017-0475-6 (2017). 28942539 PMC5676594 · DOI
  73. [86]Li G Highly efficient and precise base editing in discarded human tripronuclear embryos. Protein Cell 8, 776– 779, doi: 10.1007/s13238-017-0458-7 (2017). 28825190 PMC5636751 · DOI
  74. [87]Chadwick AC, Wang X & Musunuru K In Vivo Base Editing of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) as a Therapeutic Alternative to Genome Editing. Arterioscler Thromb Vasc Biol 37, 1741– 1747, doi: 10.1161/ATVBAHA.117.309881 (2017). 28751571 PMC5570639 · DOI
  75. [88]Komor AC Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity. Science advances 3, eaao4774, doi: 10.1126/sciadv.aao4774 (2017). 28875174 PMC5576876 · DOI
  76. [89]Li X Base editing with a Cpf1-cytidine deaminase fusion. Nat Biotechnol 36, 324– 327, doi: 10.1038/nbt.4102 (2018). 29553573 · DOI
  77. [90]Gehrke JM An APOBEC3A-Cas9 base editor with minimized bystander and off-target activities. Nat Biotechnol 36, 977– 982, doi: 10.1038/nbt.4199 (2018). 30059493 PMC6181770 · DOI
  78. [91]Wang X Efficient base editing in methylated regions with a human APOBEC3A-Cas9 fusion. Nat Biotechnol 36, 946– 949, doi: 10.1038/nbt.4198 (2018). 30125268 · DOI
  79. [92]Zong Y Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A. Nat Biotechnol 36, 950– 953 (2018). 30272679
  80. [94]Koblan LW Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction. Nat Biotechnol 36, 843– 846, doi: 10.1038/nbt.4172 (2018). 29813047 PMC6126947 · DOI · Paper page
  81. [95]Kim D Genome-wide target specificities of CRISPR RNA-guided programmable deaminases. Nat Biotechnol 35, 475– 480, doi: 10.1038/nbt.3852 (2017). 28398345 · DOI
  82. [97]Zuo E Cytosine base editor generates substantial off-target single-nucleotide variants in mouse embryos. Science, doi: 10.1126/science.aav9973 (2019). PMC7301308 30819928 · DOI · Paper page
  83. [98]Song CQ Adenine base editing in an adult mouse model of tyrosinaemia. Nat Biomed Eng, doi: 10.1038/s41551-019-0357-8 (2019). PMC6986236 31740768 · DOI · Paper page
  84. [100]Hart T High-Resolution CRISPR Screens Reveal Fitness Genes and Genotype-Specific Cancer Liabilities. Cell 163, 1515– 1526, doi: 10.1016/j.cell.2015.11.015 (2015). 26627737 · DOI · Paper page
  85. [101]Parnas O A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks. Cell 162, 675– 686, doi: 10.1016/j.cell.2015.06.059 (2015). 26189680 PMC4522370 · DOI · Paper page
  86. [102]Chen S Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis. Cell 160, 1246– 1260, doi: 10.1016/j.cell.2015.02.038 (2015). 25748654 PMC4380877 · DOI
  87. [104]Wang T, Wei JJ, Sabatini DM & Lander ES Genetic screens in human cells using the CRISPR-Cas9 system. Science 343, 80– 84, doi: 10.1126/science.1246981 (2014). 24336569 PMC3972032 · DOI · Paper page
  88. [107]Jaitin DA Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq. Cell 167, 1883– 1896 e1815, doi: 10.1016/j.cell.2016.11.039 (2016). 27984734 · DOI · Paper page
  89. [109]Sanson KR Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities. Nat Commun 9, 5416, doi: 10.1038/s41467-018-07901-8 (2018). 30575746 PMC6303322 · DOI · Paper page
  90. [110]Han K Synergistic drug combinations for cancer identified in a CRISPR screen for pairwise genetic interactions. Nat Biotechnol 35, 463– 474, doi: 10.1038/nbt.3834 (2017). 28319085 PMC5557292 · DOI
  91. [114]Wu Y Highly efficient therapeutic gene editing of human hematopoietic stem cells. Nat Med, doi: 10.1038/s41591-019-0401-y (2019). PMC6512986 30911135 · DOI · Paper page
  92. [115]Findlay GM, Boyle EA, Hause RJ, Klein JC & Shendure J Saturation editing of genomic regions by multiplex homology-directed repair. Nature 513, 120– 123, doi: 10.1038/nature13695 (2014). 25141179 PMC4156553 · DOI · Paper page
  93. [117]Korkmaz G Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9. Nat Biotechnol 34, 192– 198, doi: 10.1038/nbt.3450 (2016). 26751173 · DOI
  94. [118]Diao Y A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells. Nat Methods 14, 629– 635, doi: 10.1038/nmeth.4264 (2017). 28417999 PMC5490986 · DOI · Paper page
  95. [120]Rajagopal N High-throughput mapping of regulatory DNA. Nat Biotechnol 34, 167– 174, doi: 10.1038/nbt.3468 (2016). 26807528 PMC5108523 · DOI · Paper page
  96. [121]Sen DR The epigenetic landscape of T cell exhaustion. Science 354, 1165– 1169, doi: 10.1126/science.aae0491 (2016). 27789799 PMC5497589 · DOI · Paper page
  97. [122]Canver MC Variant-aware saturating mutagenesis using multiple Cas9 nucleases identifies regulatory elements at trait-associated loci. Nat Genet 49, 625– 634, doi: 10.1038/ng.3793 (2017). 28218758 PMC5374001 · DOI
  98. [123]Klann TS, Black JB & Gersbach CA CRISPR-based methods for high-throughput annotation of regulatory DNA. Curr Opin Biotechnol 52, 32– 41, doi: 10.1016/j.copbio.2018.02.004 (2018). 29500989 PMC6082715 · DOI
  99. [124]Liu Y Genome-wide screening for functional long noncoding RNAs in human cells by Cas9 targeting of splice sites. Nat Biotechnol 36, 1203– 1210 (2018). 30395134
  100. [125]Perli SD, Cui CH & Lu TK Continuous genetic recording with self-targeting CRISPR-Cas in human cells. Science 353, aag0511 (2016). 27540006
  101. [126]Kalhor R, Mali P & Church GM Rapidly evolving homing CRISPR barcodes. Nat Methods 14, 195– 200, doi: 10.1038/nmeth.4108 (2017). 27918539 PMC5322472 · DOI
  102. [127]Tang W & Liu DR Rewritable multi-event analog recording in bacterial and mammalian cells. Science 360, eaap8992 (2018). 29449507 PMC5898985
  103. [128]McKenna A Whole-organism lineage tracing by combinatorial and cumulative genome editing. Science 353, aaf7907, doi: 10.1126/science.aaf7907 (2016). 27229144 PMC4967023 · DOI · Paper page
  104. [129]Frieda KL Synthetic recording and in situ readout of lineage information in single cells. Nature 541, 107– 111, doi: 10.1038/nature20777 (2017). 27869821 PMC6487260 · DOI · Paper page
  105. [130]Yosef I, Goren MG & Qimron U Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40, 5569– 5576, doi: 10.1093/nar/gks216 (2012). 22402487 PMC3384332 · DOI
  106. [131]Shipman SL, Nivala J, Macklis JD & Church GM Molecular recordings by directed CRISPR spacer acquisition. Science 353, aaf1175, doi: 10.1126/science.aaf1175 (2016). 27284167 PMC4994893 · DOI
  107. [133]Sternberg SH, Redding S, Jinek M, Greene EC & Doudna JA DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature 507, 62– 67, doi: 10.1038/nature13011 (2014). 24476820 PMC4106473 · DOI
  108. [134]O'Connell MR Programmable RNA recognition and cleavage by CRISPR/Cas9. Nature 516, 263– 266, doi: 10.1038/nature13769 (2014). 25274302 PMC4268322 · DOI
  109. [135]Nelles DA Programmable RNA Tracking in Live Cells with CRISPR/Cas9. Cell 165, 488– 496, doi: 10.1016/j.cell.2016.02.054 (2016). 26997482 PMC4826288 · DOI
  110. [136]Batra R Elimination of Toxic Microsatellite Repeat Expansion RNA by RNA-Targeting Cas9. Cell 170, 899– 912 e810, doi: 10.1016/j.cell.2017.07.010 (2017). 28803727 PMC5873302 · DOI
  111. [138]Strutt SC, Torrez RM, Kaya E, Negrete OA & Doudna JA RNA-dependent RNA targeting by CRISPR-Cas9. Elife 7, e32724 (2018). 29303478 PMC5796797
  112. [139]Dugar G CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9. Mol Cell 69, 893– 905.e897, doi: 10.1016/j.molcel.2018.01.032 (2018). 29499139 PMC5859949 · DOI
  113. [140]Sampson TR, Saroj SD, Llewellyn AC, Tzeng YL & Weiss DS A CRISPR/Cas system mediates bacterial innate immune evasion and virulence. Nature 497, 254– 257, doi: 10.1038/nature12048 (2013). 23584588 PMC3651764 · DOI
  114. [141]Price AA, Sampson TR, Ratner HK, Grakoui A & Weiss DS Cas9-mediated targeting of viral RNA in eukaryotic cells. Proc Natl Acad Sci U S A 112, 6164– 6169, doi: 10.1073/pnas.1422340112 (2015). 25918406 PMC4434742 · DOI
  115. [142]Abudayyeh OO C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector. Science 353, aaf5573, doi: 10.1126/science.aaf5573 (2016). 27256883 PMC5127784 · DOI
  116. [143]Abudayyeh OO RNA targeting with CRISPR-Cas13. Nature 550, 280– 284, doi: 10.1038/nature24049 (2017). 28976959 PMC5706658 · DOI · Paper page
  117. [144]Cox DBT RNA editing with CRISPR-Cas13. Science 358, 1019– 1027, doi: 10.1126/science.aaq0180 (2017). 29070703 PMC5793859 · DOI
  118. [145]East-Seletsky A Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection. Nature 538, 270– 273, doi: 10.1038/nature19802 (2016). 27669025 PMC5576363 · DOI
  119. [146]Gootenberg JS Nucleic acid detection with CRISPR-Cas13a/C2c2. Science 356, 438– 442, doi: 10.1126/science.aam9321 (2017). 28408723 PMC5526198 · DOI
  120. [147]Gootenberg JS Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6. Science 360, 439– 444, doi: 10.1126/science.aaq0179 (2018). 29449508 PMC5961727 · DOI
  121. [149]Nishikura K Functions and regulation of RNA editing by ADAR deaminases. Annu Rev Biochem 79, 321– 349, doi: 10.1146/annurev-biochem-060208-105251 (2010). 20192758 PMC2953425 · DOI
  122. [150]Tan MH Dynamic landscape and regulation of RNA editing in mammals. Nature 550, 249– 254, doi: 10.1038/nature24041 (2017). 29022589 PMC5723435 · DOI
  123. [151]Yan WX Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein. Mol Cell 70, 327– 339.e325, doi: 10.1016/j.molcel.2018.02.028 (2018). 29551514 PMC5935466 · DOI
  124. [152]Konermann S Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors. Cell 173, 665– 676.e614, doi: 10.1016/j.cell.2018.02.033 (2018). 29551272 PMC5910255 · DOI · Paper page
  125. [153]Thakore PI, Black JB, Hilton IB & Gersbach CA Editing the epigenome: technologies for programmable transcription and epigenetic modulation. Nat Methods 13, 127– 137, doi: 10.1038/nmeth.3733 (2016). 26820547 PMC4922638 · DOI · Paper page
  126. [155]Larson MH CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat Protoc 8, 2180– 2196, doi: 10.1038/nprot.2013.132 (2013). 24136345 PMC3922765 · DOI
  127. [157]Margolin JF Kruppel-associated boxes are potent transcriptional repression domains. Proc Natl Acad Sci U S A 91, 4509– 4513 (1994). 8183939 PMC43815
  128. [158]Kearns NA Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells. Development 141, 219– 223, doi: 10.1242/dev.103341 (2014). 24346702 PMC3865759 · DOI
  129. [159]Gao X Comparison of TALE designer transcription factors and the CRISPR/dCas9 in regulation of gene expression by targeting enhancers. Nucleic Acids Res 42, e155, doi: 10.1093/nar/gku836 (2014). 25223790 PMC4227760 · DOI
  130. [160]Kearns NA Functional annotation of native enhancers with a Cas9-histone demethylase fusion. Nat Methods 12, 401– 403, doi: 10.1038/nmeth.3325 (2015). 25775043 PMC4414811 · DOI · Paper page
  131. [162]Yeo NC An enhanced CRISPR repressor for targeted mammalian gene regulation. Nat Methods 15, 611– 616, doi: 10.1038/s41592-018-0048-5 (2018). 30013045 PMC6129399 · DOI
  132. [163]Perez-Pinera P RNA-guided gene activation by CRISPR-Cas9-based transcription factors. Nat Methods 10, 973– 976, doi: 10.1038/nmeth.2600 (2013). 23892895 PMC3911785 · DOI · Paper page
  133. [164]Maeder ML CRISPR RNA-guided activation of endogenous human genes. Nat Methods 10, 977– 979, doi: 10.1038/nmeth.2598 (2013). 23892898 PMC3794058 · DOI · Paper page
  134. [165]Farzadfard F, Perli SD & Lu TK Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth Biol 2, 604– 613, doi: 10.1021/sb400081r (2013). 23977949 PMC3805333 · DOI
  135. [166]Cheng AW Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system. Cell Res 23, 1163– 1171, doi: 10.1038/cr.2013.122 (2013). 23979020 PMC3790238 · DOI
  136. [167]Chakraborty S A CRISPR/Cas9-based system for reprogramming cell lineage specification. Stem Cell Reports 3, 940– 947, doi: 10.1016/j.stemcr.2014.09.013 (2014). 25448066 PMC4264059 · DOI
  137. [168]Tanenbaum ME, Gilbert LA, Qi LS, Weissman JS & Vale RD A protein-tagging system for signal amplification in gene expression and fluorescence imaging. Cell 159, 635– 646, doi: 10.1016/j.cell.2014.09.039 (2014). 25307933 PMC4252608 · DOI
  138. [169]Chavez A Highly efficient Cas9-mediated transcriptional programming. Nat Methods 12, 326– 328, doi: 10.1038/nmeth.3312 (2015). 25730490 PMC4393883 · DOI · Paper page
  139. [171]Black JB & Gersbach CA Synthetic transcription factors for cell fate reprogramming. Curr Opin Genet Dev 52, 13– 21, doi: 10.1016/j.gde.2018.05.001 (2018). 29803990 · DOI
  140. [172]Black JB Targeted Epigenetic Remodeling of Endogenous Loci by CRISPR/Cas9-Based Transcriptional Activators Directly Converts Fibroblasts to Neuronal Cells. Cell Stem Cell 19, 406– 414, doi: 10.1016/j.stem.2016.07.001 (2016). 27524438 PMC5010447 · DOI
  141. [173]Liu P, Chen M, Liu Y, Qi LS & Ding S CRISPR-Based Chromatin Remodeling of the Endogenous Oct4 or Sox2 Locus Enables Reprogramming to Pluripotency. Cell Stem Cell 22, 252– 261 (2018). 29358044
  142. [174]Hilton IB Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers. Nat Biotechnol 33, 510– 517, doi: 10.1038/nbt.3199 (2015). 25849900 PMC4430400 · DOI
  143. [175]Choudhury SR, Cui Y, Lubecka K, Stefanska B & Irudayaraj J CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter. Oncotarget 7, 46545– 46556, doi: 10.18632/oncotarget.10234 (2016). 27356740 PMC5216816 · DOI
  144. [176]Liu XS Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene. Cell 172, 979– 992.e976, doi: 10.1016/j.cell.2018.01.012 (2018). 29456084 PMC6375087 · DOI
  145. [177]Amabile A Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing. Cell 167, 219– 232.e214, doi: 10.1016/j.cell.2016.09.006 (2016). 27662090 PMC5039111 · DOI · Paper page
  146. [178]Gonzalez F An iCRISPR platform for rapid, multiplexable, and inducible genome editing in human pluripotent stem cells. Cell Stem Cell 15, 215– 226, doi: 10.1016/j.stem.2014.05.018 (2014). 24931489 PMC4127112 · DOI
  147. [179]Chen Y Engineering Human Stem Cell Lines with Inducible Gene Knockout using CRISPR/Cas9. Cell Stem Cell 17, 233– 244, doi: 10.1016/j.stem.2015.06.001 (2015). 26145478 PMC4530040 · DOI
  148. [180]Dow LE Inducible in vivo genome editing with CRISPR-Cas9. Nat Biotechnol 33, 390– 394, doi: 10.1038/nbt.3155 (2015). 25690852 PMC4390466 · DOI
  149. [182]Balboa D Conditionally Stabilized dCas9 Activator for Controlling Gene Expression in Human Cell Reprogramming and Differentiation. Stem Cell Reports 5, 448– 459, doi: 10.1016/j.stemcr.2015.08.001 (2015). 26352799 PMC4618656 · DOI
  150. [183]Zetsche B, Volz SE & Zhang F A split-Cas9 architecture for inducible genome editing and transcription modulation. Nat Biotechnol 33, 139– 142, doi: 10.1038/nbt.3149 (2015). 25643054 PMC4503468 · DOI
  151. [184]Bao Z, Jain S, Jaroenpuntaruk V & Zhao H Orthogonal Genetic Regulation in Human Cells Using Chemically Induced CRISPR/Cas9 Activators. ACS Synth Biol 6, 686– 693, doi: 10.1021/acssynbio.6b00313 (2017). 28054767 · DOI
  152. [185]Nihongaki Y, Yamamoto S, Kawano F, Suzuki H & Sato M CRISPR-Cas9-based photoactivatable transcription system. Chem Biol 22, 169– 174, doi: 10.1016/j.chembiol.2014.12.011 (2015). 25619936 · DOI
  153. [186]Polstein LR & Gersbach CA A light-inducible CRISPR-Cas9 system for control of endogenous gene activation. Nature chemical biology 11, 198– 200, doi: 10.1038/nchembio.1753 (2015). 25664691 PMC4412021 · DOI
  154. [187]Bubeck F Engineered anti-CRISPR proteins for optogenetic control of CRISPR-Cas9. Nat Methods 15, 924– 927, doi: 10.1038/s41592-018-0178-9 (2018). 30377362 · DOI
  155. [188]Nihongaki Y CRISPR-Cas9-based photoactivatable transcription systems to induce neuronal differentiation. Nat Methods 14, 963– 966, doi: 10.1038/nmeth.4430 (2017). 28892089 · DOI
  156. [189]Gao Y Complex transcriptional modulation with orthogonal and inducible dCas9 regulators. Nat Methods 13, 1043– 1049, doi: 10.1038/nmeth.4042 (2016). 27776111 PMC5436902 · DOI
  157. [191]Xie S, Duan J, Li B, Zhou P & Hon GC Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells. Mol Cell 66, 285– 299 e285, doi: 10.1016/j.molcel.2017.03.007 (2017). 28416141 · DOI · Paper page
  158. [192]Simeonov DR Discovery of stimulation-responsive immune enhancers with CRISPR activation. Nature 549, 111– 115, doi: 10.1038/nature23875 (2017). 28854172 PMC5675716 · DOI · Paper page
  159. [194]Joung J Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening. Nat Protoc 12, 828– 863, doi: 10.1038/nprot.2017.016 (2017). 28333914 PMC5526071 · DOI · Paper page
  160. [195]Liu SJ CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. Science 355, aah7111 (2017). 27980086 PMC5394926
  161. [196]Joung J Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood. Nature 548, 343– 346, doi: 10.1038/nature23451 (2017). 28792927 PMC5706657 · DOI
  162. [197]Fujita T & Fujii H Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR. Biochem Biophys Res Commun 439, 132– 136, doi: 10.1016/j.bbrc.2013.08.013 (2013). 23942116 · DOI
  163. [198]Fujita T & Fujii H Identification of proteins associated with an IFNgamma-responsive promoter by a retroviral expression system for enChIP using CRISPR. PLoS One 9, e103084, doi: 10.1371/journal.pone.0103084 (2014). 25051498 PMC4106880 · DOI
  164. [199]Lam SS Directed evolution of APEX2 for electron microscopy and proximity labeling. Nat Methods 12, 51– 54, doi: 10.1038/nmeth.3179 (2015). 25419960 PMC4296904 · DOI
  165. [200]Myers SA Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling. Nat Methods 15, 437– 439 (2018). 29735997 PMC6202184
  166. [201]Liu X In Situ Capture of Chromatin Interactions by Biotinylated dCas9. Cell 170, 1028– 1043, doi: 10.1016/j.cell.2017.08.003 (2017). 28841410 PMC6857456 · DOI
  167. [202]Morgan SL Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping. Nat Commun 8, 15993, doi: 10.1038/ncomms15993 (2017). 28703221 PMC5511349 · DOI · Paper page
  168. [204]Wang H CRISPR-Mediated Programmable 3D Genome Positioning and Nuclear Organization. Cell 175, 1405– 1417 (2018). 30318144 PMC6239909
  169. [205]D'Ippolito AM Pre-established Chromatin Interactions Mediate the Genomic Response to Glucocorticoids. Cell Syst 7, 146– 160 e147, doi: 10.1016/j.cels.2018.06.007 (2018). 30031775 · DOI
  170. [206]Chen B Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system. Cell 155, 1479– 1491, doi: 10.1016/j.cell.2013.12.001 (2013). 24360272 PMC3918502 · DOI
  171. [207]Zhou Y Painting a specific chromosome with CRISPR/Cas9 for live-cell imaging. Cell Res 27, 298– 301, doi: 10.1038/cr.2017.9 (2017). 28084328 PMC5339855 · DOI
  172. [208]Ma H Multicolor CRISPR labeling of chromosomal loci in human cells. Proc Natl Acad Sci U S A 112, 3002– 3007, doi: 10.1073/pnas.1420024112 (2015). 25713381 PMC4364232 · DOI
  173. [209]Chen B Expanding the CRISPR imaging toolset with Staphylococcus aureus Cas9 for simultaneous imaging of multiple genomic loci. Nucleic Acids Res 44, e75, doi: 10.1093/nar/gkv1533 (2016). 26740581 PMC4856973 · DOI
  174. [210]Ma H Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Nat Biotechnol 34, 528– 530, doi: 10.1038/nbt.3526 (2016). 27088723 PMC4864854 · DOI
  175. [211]Shao S Long-term dual-color tracking of genomic loci by modified sgRNAs of the CRISPR/Cas9 system. Nucleic Acids Res 44, e86, doi: 10.1093/nar/gkw066 (2016). 26850639 PMC4872083 · DOI
  176. [212]Ding Q Permanent alteration of PCSK9 with in vivo CRISPR-Cas9 genome editing. Circ Res 115, 488– 492, doi: 10.1161/CIRCRESAHA.115.304351 (2014). 24916110 PMC4134749 · DOI · Paper page
  177. [213]Wang X CRISPR-Cas9 Targeting of PCSK9 in Human Hepatocytes In Vivo-Brief Report. Arterioscler Thromb Vasc Biol 36, 783– 786, doi: 10.1161/atvbaha.116.307227 (2016). 26941020 PMC4850082 · DOI
  178. [214]Thakore PI RNA-guided transcriptional silencing in vivo with S. aureus CRISPR-Cas9 repressors. Nat Commun 9, 1674, doi: 10.1038/s41467-018-04048-4 (2018). 29700298 PMC5920046 · DOI
  179. [215]Yu W Nrl knockdown by AAV-delivered CRISPR/Cas9 prevents retinal degeneration in mice. Nat Commun 8, 14716, doi: 10.1038/ncomms14716 (2017). 28291770 PMC5355895 · DOI · Paper page
  180. [216]Young CS A Single CRISPR-Cas9 Deletion Strategy that Targets the Majority of DMD Patients Restores Dystrophin Function in hiPSC-Derived Muscle Cells. Cell Stem Cell 18, 533– 540, doi: 10.1016/j.stem.2016.01.021 (2016). 26877224 PMC4826286 · DOI
  181. [217]Nelson CE In vivo genome editing improves muscle function in a mouse model of Duchenne muscular dystrophy. Science 351, 403– 407, doi: 10.1126/science.aad5143 (2016). 26721684 PMC4883596 · DOI · Paper page
  182. [218]Tabebordbar M In vivo gene editing in dystrophic mouse muscle and muscle stem cells. Science 351, 407– 411, doi: 10.1126/science.aad5177 (2016). 26721686 PMC4924477 · DOI · Paper page
  183. [219]Long C Postnatal genome editing partially restores dystrophin expression in a mouse model of muscular dystrophy. Science 351, 400– 403, doi: 10.1126/science.aad5725 (2016). 26721683 PMC4760628 · DOI
  184. [220]Hakim CH AAV CRISPR editing rescues cardiac and muscle function for 18 months in dystrophic mice. JCI Insight 3, doi: 10.1172/jci.insight.124297 (2018). PMC6328021 30518686 · DOI
  185. [221]Nelson CE Long-term evaluation of AAV-CRISPR genome editing for Duchenne muscular dystrophy. Nat Med 25, 427– 432, doi: 10.1038/s41591-019-0344-3 (2019). 30778238 PMC6455975 · DOI
  186. [222]Amoasii L Gene editing restores dystrophin expression in a canine model of Duchenne muscular dystrophy. Science 362, 86– 91, doi: 10.1126/science.aau1549 (2018). 30166439 PMC6205228 · DOI · Paper page
  187. [223]Gapinske M CRISPR-SKIP: programmable gene splicing with single base editors. Genome Biol 19, 107, doi: 10.1186/s13059-018-1482-5 (2018). 30107853 PMC6092781 · DOI
  188. [224]Yuan J Genetic Modulation of RNA Splicing with a CRISPR-Guided Cytidine Deaminase. Mol Cell 72, 380– 394 (2018). 30293782
  189. [226]Nelson CE & Gersbach CA Engineering Delivery Vehicles for Genome Editing. Annu Rev Chem Biomol Eng 7, 637– 662, doi: 10.1146/annurev-chembioeng-080615-034711 (2016). 27146557 · DOI
  190. [227]Maeder ML Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10. Nat Med 25, 229– 233, doi: 10.1038/s41591-018-0327-9 (2019). 30664785 · DOI · Paper page
  191. [228]Miller JF & Sadelain M The journey from discoveries in fundamental immunology to cancer immunotherapy. Cancer Cell 27, 439– 449, doi: 10.1016/j.ccell.2015.03.007 (2015). 25858803 · DOI
  192. [230]Ren J A versatile system for rapid multiplex genome-edited CAR T cell generation. Oncotarget 8, 17002– 17011, doi: 10.18632/oncotarget.15218 (2017). 28199983 PMC5370017 · DOI
  193. [231]Qasim W Molecular remission of infant B-ALL after infusion of universal TALEN gene-edited CAR T cells. Sci Transl Med 9, doi: 10.1126/scitranslmed.aaj2013 (2017). 28123068 · DOI · Paper page
  194. [232]Schumann K Generation of knock-in primary human T cells using Cas9 ribonucleoproteins. Proc Natl Acad Sci U S A 112, 10437– 10442, doi: 10.1073/pnas.1512503112 (2015). 26216948 PMC4547290 · DOI · Paper page
  195. [233]Ren J Multiplex Genome Editing to Generate Universal CAR T Cells Resistant to PD1 Inhibition. Clinical cancer research: an official journal of the American Association for Cancer Research 23, 2255– 2266, doi: 10.1158/1078-0432.ccr-16-1300 (2017). 27815355 PMC5413401 · DOI · Paper page
  196. [234]Torikai H Toward eliminating HLA class I expression to generate universal cells from allogeneic donors. Blood 122, 1341– 1349, doi: 10.1182/blood-2013-03-478255 (2013). 23741009 PMC3750336 · DOI
  197. [235]Qasim W Molecular remission of infant B-ALL after infusion of universal TALEN gene-edited CAR T cells. Science translational medicine 9, eaaj2013 (2017). 28123068
  198. [236]Maeder ML & Gersbach CA Genome-editing Technologies for Gene and Cell Therapy. Mol Ther 24, 430– 446 (2016). 26755333 PMC4786923
  199. [237]Zhou Y High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells. Nature 509, 487– 491, doi: 10.1038/nature13166 (2014). 24717434 · DOI · Paper page
  200. [238]Wang T Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras. Cell 168, 890– 903 e815, doi: 10.1016/j.cell.2017.01.013 (2017). 28162770 PMC5445660 · DOI · Paper page

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Cited by

Sorted by citations

Authors
Pickar-Oliver, A., & Gersbach, C. A.
Affiliations
Duke University (US)
Corresponding author
Gersbach, Charles A.
Venue
Nature Reviews Molecular Cell Biology
Published
2019-05-30
Volume
20
Issue
8
Pages
490-507
ISSN
  • 1471-0072 (ISSN-L)
  • 1471-0080
OpenAlex
W2947777875
Cited by
1,459
References
43
Citations by year
2026: 128 · 2025: 189 · 2024: 211 · 2023: 228 · 2022: 253 · 2021: 222 · 2020: 196 · 2019: 30
FWCI
15.54
Type
journal article
Language
en
Open access
Locations
  • Nature Reviews Molecular Cell Biology (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
Funders
  • National Institutes of Health (UG3TR002142)
  • National Institute on Drug Abuse (R33DA041878, R01DA036865)
  • National Human Genome Research Institute (U01HG007900, UM1HG009428)
  • National Institute of General Medical Sciences (R41GM119914)
  • National Institute of Allergy and Infectious Diseases (R41AI136755)
  • National Institute of Neurological Disorders and Stroke (R21NS103007)
  • National Institute of Arthritis and Musculoskeletal and Skin Diseases (P30AR066527, R01AR069085)
  • National Center for Advancing Translational Sciences
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
  • Health Sciences › Medicine › Oncology › CAR-T cell therapy research
Keywords
CRISPR-Cas, genome editing, Cas9, Cas12, cascades, Cas13, single-base editing, epigenetic regulation, gene therapy, cell therapy, DNA repair, homology-directed repair, non-homologous end joining, CRISPR-based diagnostics
MeSH terms
Gene Editing, RNA, Guide, CRISPR-Cas Systems, Animals, Endonucleases, Humans, Genetic Therapy, RNA, Guide, Kinetoplastida, Clustered Regularly Interspaced Short Palindromic Repeats, CRISPR-Cas Systems

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