BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans
Open accessPublished version of a preprint
Abstract
BNT162b2, a nucleoside-modified mRNA formulated in lipid nanoparticles that encodes the SARS-CoV-2 spike glycoprotein (S) stabilized in its prefusion conformation, has demonstrated 95% efficacy in preventing COVID-19 1. Here we extend a previous phase-I/II trial report 2 by presenting data on the immune response induced by BNT162b2 prime-boost vaccination from an additional phase-I/II trial in healthy adults (18-55 years old). BNT162b2 elicited strong antibody responses: at one week after the boost, SARS-CoV-2 serum geometric mean 50% neutralizing titres were up to 3.3-fold above those observed in samples from individuals who had recovered from COVID-19. Sera elicited by BNT162b2 neutralized 22 pseudoviruses bearing the S of different SARS-CoV-2 variants. Most participants had a strong response of IFNγ+ or IL-2+ CD8+ and CD4+ T helper type 1 cells, which was detectable throughout the full observation period of nine weeks following the boost. Using peptide-MHC multimer technology, we identified several BNT162b2-induced epitopes that were presented by frequent MHC alleles and conserved in mutant strains. One week after the boost, epitope-specific CD8+ T cells of the early-differentiated effector-memory phenotype comprised 0.02-2.92% of total circulating CD8+ T cells and were detectable (0.01-0.28%) eight weeks later. In summary, BNT162b2 elicits an adaptive humoral and poly-specific cellular immune response against epitopes that are conserved in a broad range of variants, at well-tolerated doses.
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Claims the paper makes
34 of 49 cited sources checked · 13 supported · 0 flagged · accuracy not yet measured
- Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans
BNT162b2 encodes the full-length SARS-CoV-2 spike protein stabilized in its prefusion conformation.
“BNT162b2 encodes full-length SARS-CoV-2 S stabilized in the prefusion conformation 18 .”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [18] Vogel, A. B. et al. BNT162b vaccines protect rhesus macaques from SARS-CoV-2. Nature 592, 283–289 (2021). source
- Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans
In the US phase-I/II trial, BNT162b2 at doses up to 30 μg was associated with generally mild-to-moderate local injection-site reactions and systemic events such as fatigue, headache and myalgia.
“In the phase-I/II trial in the USA (NCT04368728), immunization with BNT162b2 at dose levels of up to 30 μg was associated with generally mild-to-moderate local reactions at the injection site as well as systemic events, such as fatigue, headache and myalgia 2 .”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
- Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans
BNT162b2 was chosen as the pivotal candidate based on all data from the two phase-I/II trials and non-human primate challenge studies.
“BNT162b2 was selected as pivotal candidate on the basis of the totality of data obtained in the two phase-I/II trials and challenge studies in non-human primates 2,18 .”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
The Introduction describes German and US clinical studies, and the Discussion says the clinical data guided the decision to advance BNT162b2 to the pivotal Phase 2/3 evaluation. Our copy does not say that non-human-primate challenge studies formed part of that decision, so the stated basis for selection is only partly supported. Page numbers are unavailable in our copy. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [18] Vogel, A. B. et al. BNT162b vaccines protect rhesus macaques from SARS-CoV-2. Nature 592, 283–289 (2021). source
The Discussion (page not available) says BNT162b2 was selected for further clinical testing largely because it was better tolerated than BNT162b1 while showing comparable immunogenicity in clinical trials, and because its full-length spike offered broader T-cell epitopes. The paper reports macaque challenge studies, but does not say their results were a basis for that selection or characterize the decision as based on the totality of data from two phase-I/II trials. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Study design and conductcitation
The S protein of the USA_WA1/2020 strain is identical in sequence to the wild-type SARS-CoV-2 S protein from the Wuhan-Hu-1 isolate.
“The USA_WA1/2020 strain S is identical in sequence to the wild-type SARS-CoV-2 S (Wuhan-Hu-1 isolate).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [42] Berger Rentsch, M. & Zimmer, G. A vesicular stomatitis virus replicon-based bioassay for the rapid and sensitive determination of multi-species type I interferon. PLoS ONE 6, e25858 (2011). source
The Results section, “Generation of the VSV*ΔG(Luc) replicon” (page unavailable), describes a vesicular stomatitis virus replicon, not SARS-CoV-2 spike protein. Searches for USA_WA1/2020, Wuhan-Hu-1, and spike-protein sequence identity found no passage in our copy addressing the claimed comparison. (LLM, conf=0.79)
Experimental — accuracy not yet measured
- Interpretationown data
Together with reports of preserved neutralization of SARS-CoV-2 with key B.1.1.7 and B.1.351 spike mutations and of pseudovirus with the full B.1.1.7 spike mutation set, our data indicate broad BNT162b2-elicited immune recognition.
“Together with recent reports of the preserved neutralization of SARS-CoV-2 with key S mutations found in the B.1.1.7 and the B.1.351lineage 39,40 , and neutralization of pseudovirus bearing the full set of mutations of B.1.1.7 S 41 , our data indicate broad BNT162b2-elicited immune recognition 2,13,14 .”
Quote in the paperSubstantial claim6 of 6 sources checked- cites [39] Muik, A. et al. Neutralization of SARS-CoV-2 lineage B.1.1.7 pseudovirus by BNT162b2 vaccine-elicited human sera. Science 371, 1152–1153 (2021). source
- cites [40] Xie, X. et al. An infectious cDNA clone of SARS-CoV-2. Cell Host Microbe 27, 841–848 (2020). source
The Results describe a SARS-CoV-2 infectious clone and mNeonGreen reporter virus, while the Introduction discusses their potential use in vaccine development. Our copy does not address BNT162b2-elicited immune recognition or neutralization of B.1.1.7 or B.1.351 mutations (searched: BNT162b2, variant neutralization, and neutralizing antibodies). (LLM, conf=0.75)
Experimental — accuracy not yet measured - cites [41] Muruato, A. E. et al. A high-throughput neutralizing antibody assay for COVID-19 diagnosis and vaccine evaluation. Nat. Commun. 11, 4059 (2020). source
The Results describe neutralization testing with COVID-19 patient sera, and the Discussion describes the assay’s use in vaccine trials. Our copy does not report BNT162b2-elicited immune recognition; searches for BNT162b2 and the B.1.1.7 and B.1.351 mutations found no supporting passage. The variant-neutralization reports in the citing sentence are attached to other citations. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
The Immunogenicity section reports BNT162b2-elicited antigen-binding and neutralizing responses, supporting immune recognition of the virus tested. It does not establish broad recognition across spike variants: the assay used the USA_WA1/2020 strain, and the Discussion says BNT162b2 cellular responses were still being studied. The variant-neutralization reports in the citing sentence have separate citations, not this one. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [13] Mulligan, M. J. et al. Phase I/II study of COVID-19 RNA vaccine BNT162b1 in adults. Nature 586, 589–593 (2020). source
The Discussion (p. 5) reports substantial SARS-CoV-2 neutralization after vaccination with BNT162b1, supporting the general point that vaccination elicited an immune response. It does not establish broad BNT162b2-elicited recognition: the study tested a different vaccine candidate, and its Methods describe an assay using the USA_WA1/2020 strain. The variant-neutralization reports in the citing sentence are attached to other citations (39–41), not this source. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [14] Sahin, U. et al. COVID-19 vaccine BNT162b1 elicits human antibody and TH1 T cell responses. Nature 586, 594–599 (2020). source
The Article section reports that BNT162b1 immune sera neutralized all 17 spike-variant pseudoviruses tested, supporting the general point that vaccination elicited broad recognition. This paper studied BNT162b1, however, not BNT162b2-elicited recognition; the B.1.1.7 and B.1.351 neutralization reports are cited separately in the sentence. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
Phase-III and real-world data show that a single 30-μg dose of BNT162b2 confers partial disease protection despite low neutralizing antibody titres.
“Phase-III trial data 1 and real-world data [3][4][5] show that a single 30-μg dose of BNT162b2, although associated with low neutralizing antibody titres, confers partial disease protection.”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [1] Polack, F. P. et al. Safety and efficacy of the BNT162b2 mRNA Covid-19 vaccine. N. Engl. J. Med. 383, 2603–2615 (2020). source
The Results (Efficacy) report 52% efficacy against Covid-19 between the first and second 30-μg doses, supporting partial protection after the first dose. The Discussion cautions that the trial was not designed to assess a single-dose regimen. This paper does not report low neutralizing antibody titres after one dose; the cited real-world data are attributed to other references in the sentence. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [3][4][5]
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Premisecitation
Recognition of T cell epitopes across the entire spike length was one reason BNT162b2 was favoured over BNT162b1.
“T cell recognition of epitopes spread across the entire length of S was one of the reasons to favour BNT162b2 over BNT162b1 14 .”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [14] Sahin, U. et al. COVID-19 vaccine BNT162b1 elicits human antibody and TH1 T cell responses. Nature 586, 594–599 (2020). source
The Article section (page unavailable) says BNT162b2 encodes the full spike protein and was selected to advance, but gives its more favourable systemic tolerability as the reason. It does not report T-cell recognition of epitopes across the spike as a reason; the same section says epitope diversity was not analysed in this study. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
The antigen-encoding RNA contains sequence elements that increase RNA stability and translation efficiency in human dendritic cells.
“The antigen-encoding RNA contains sequence elements that increase RNA stability and translation efficiency in human dendritic cells 15,16 .”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [15] Holtkamp, S. et al. Modification of antigen-encoding RNA increases stability, translational efficacy, and T-cell stimulatory capacity of dendritic cells. Blood 108, 4009–4017 (2006). source
- cites [16] Orlandini von Niessen, A. G. et al. Improving mRNA-based therapeutic gene delivery by expression-augmenting 3′ UTRs identified by cellular library screening. Mol. Ther. 27, 824–836 (2019). source
- Findingown data
On day 29, S1-binding IgG GMCs showed a strong booster response, ranging from 691 to 8,279 U ml−1.
“On day 29, S1-binding IgG GMCs showed a strong booster response that ranged from 691 to 8,279 U ml -1 .”
Quote in the paperSubstantial claim - Findingown data
All 30-μg BNT162b2 recipients stayed well above a GMT of 40 throughout follow-up to day 85.
“All participants immunized with 30 μg BNT162b2 remained well above a GMT of 40 throughout the entire follow-up period (until day 85) (Extended Data Fig. 4b).”
Quote in the paperNot a substantial claim - Findingown data
After an initial decrease, GMTs remained stable from day 43 to day 85 in participants who received 10-30 μg BNT162b2.
“GMTs initially decreased thereafter, and remained stable from day 43 up to day 85 for participants who were vaccinated with BNT162b2 dose levels of 10 to 30 μg.”
Quote in the paperNot a substantial claim - Findingown data
BNT162b2-immune sera from day 29 or 43 neutralized B.1.1.298 spike pseudovirus with four point mutations as efficiently as wild-type Wuhan-Hu-1 spike pseudovirus.
“Likewise, BNT162b2-immune sera collected on day 29 or 43 neutralized pseudovirus bearing the S of B.1.1.298with four point mutations as efficiently as they did pseudovirus with the S of SARS-CoV-2 Wuhan-Hu-1 (wild type) (Fig. 1b).”
Quote in the paperSubstantial claim - Findingown data§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans
Sera from BNT162b2-vaccinated individuals neutralized 22 pseudoviruses carrying spike proteins from different SARS-CoV-2 variants.
“Sera elicited by BNT162b2 neutralized 22 pseudoviruses bearing the S of different SARS-CoV-2 variants.”
Quote in the paperSubstantial claim - Findingown data§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans
One week after the booster, BNT162b2-elicited sera had SARS-CoV-2 50% neutralizing geometric mean titres up to 3.3 times those of COVID-19 convalescent samples.
“at one week after the boost, SARS-CoV-2 serum geometric mean 50% neutralizing titres were up to 3.3-fold above those observed in samples from individuals who had recovered from COVID-19.”
Quote in the paperSubstantial claim - Findingown data
After the day-29 booster, robustly expanded SARS-CoV-2 spike-specific CD4+ T cells were detected in all 37 participants across all BNT162b2 dose levels.
“After the booster dose (day 29), we detected robustly expanded SARS-CoV-2 S-specific CD4 + T cells in all 37 participants at all BNT162b2 dose levels (Fig. 2a, Extended Data Fig. 5a, b).”
Quote in the paperSubstantial claim - Findingown data
Pseudoviruses carrying B.1.351 spike with ten or eight mutations were neutralized at lower GMTs than wild-type (33 and 30 versus 150).
“Pseudoviruses with the S of B.1.351with either ten mutations or a reduced set of eight mutations were neutralized at lower GMTs than the wild-type strain (33 and 30, respectively, as compared to 150).”
Quote in the paperSubstantial claim - Findingown data
No clinically relevant changes occurred in routine clinical laboratory values.
“No clinically relevant changes in routine clinical laboratory values occurred.”
Quote in the paperNot a substantial claim - Findingown data
Similar results were seen when the RBD alone was used as the target antigen.
“We made similar observations when using only the RBD as the target antigen (Extended Data Fig. 4a).”
Quote in the paperNot a substantial claim - Findingown data
A dose-level dependency was observed only between the 1-μg and 10-μg dose levels.
“We observed a dose-level dependency only between the 1-and 10-μg dose levels.”
Quote in the paperNot a substantial claim - Findingown data
For doses of 10 μg and above, S1-binding IgG GMCs declined gradually after peaking on day 29.
“For dose levels of 10 μg and greater, the S1-binding IgG GMCs gradually declined from a peak on day 29”
Quote in the paperNot a substantial claim - Findingown data
Neutralizing GMTs decreased after peaking on day 29 and then stabilized around day 43.
“By contrast, GMTs initially decreased after their peak on day 29 and stabilized around day 43”
Quote in the paperNot a substantial claim - Findingown data
By day 85, S1-binding antibody GMCs had declined to 1,384-2,991 U ml−1, well above the 631 U ml−1 level in COVID-19 convalescent individuals.
“S1-binding antibody GMCs declined to a range of 1,384 to 2,991 U ml -1 at day 85, which is well above the level observed in individuals who had recovered from COVID-19 (631 U ml -1 ).”
Quote in the paperSubstantial claim - Findingown data
Neutralizing-antibody GMTs correlated strongly with S1-binding IgG GMCs.
“Neutralizing-antibody GMTs correlated strongly with S1-binding IgG GMCs (Extended Data Fig. 4c).”
Quote in the paperNot a substantial claim - Findingown data
After the booster, all participants given more than 1 μg had detectable antigen-binding antibody concentrations and virus-neutralizing serum titres.
“All participants who received dose levels greater than 1 μg had detectable antigen-binding antibody concentrations and virus neutralizing serum titres after the booster dose.”
Quote in the paperNot a substantial claim - Findingown data§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans
Peptide-MHC multimer analysis identified several BNT162b2-induced epitopes that were presented by common MHC alleles and conserved in mutant strains.
“Using peptide-MHC multimer technology, we identified several BNT162b2-induced epitopes that were presented by frequent MHC alleles and conserved in mutant strains.”
Quote in the paperSubstantial claim - Findingown data
After the priming dose, SARS-CoV-2 neutralizing GMTs increased modestly in a subset of participants by day 22.
“SARS-CoV-2 GMTs of sera increased modestly in a proportion of participants after the priming dose (day 22) (Fig. 1a).”
Quote in the paperNot a substantial claim - Findingown data
Day-29 sera from BNT162b2-vaccinated participants had high neutralizing titres against every tested single-amino-acid SARS-CoV-2 spike variant.
“Sera collected from BNT162b2-vaccinated participants on day 29 had high neutralizing titres to each of the SARS-CoV-2 S variants with a single amino acid altered (Extended Data Fig. 4d).”
Quote in the paperSubstantial claim - Findingown data
Almost all of the 22 pseudotyped viruses carrying spike mutations from circulating SARS-CoV-2 variants were efficiently neutralized by BNT162b2-immune sera.
“Of the 22 pseudotyped viruses with the S mutations of circulating SARS-CoV-2 variants, almost all were efficiently neutralized by BNT162b2-immune sera.”
Quote in the paperSubstantial claim - Findingown data
Spike-specific CD8+ T cells secreted mainly IFNγ and lower IL-2 levels after stimulation with spike pool 1 or pool 2.
“S-specific CD8 + T cells secreted predominantly IFNγ, and lower levels of IL-2, in response to S pool 1 and S pool 2 stimulation.”
Quote in the paperNot a substantial claim - Findingown data
Spike-specific CD8+ T cell responses correlated with S1-binding IgG.
“S-specific CD8 + T cell responses correlated with S1-binding IgG (Extended Data Fig. 6c)”
Quote in the paperSubstantial claim - Findingown data
Two doses of BNT162b2 induced poly-epitopic CD4+ T cell responses, de novo or amplified, against both N- and C-terminal spike portions in 94.1% (32/34) of participants.
“In conclusion, in 94.1% (32 out of 34) of participants, two doses of BNT162b2 induced poly-epitopic CD4 + T cell responses (de novo or amplified) directed against both N-and C-terminal portions of S.”
Quote in the paperSubstantial claim - Findingown data
De novo spike-specific CD8+ T cell responses were induced in 33 participants.
“De novo S-specific CD8 + T cell responses were induced in 33 participants.”
Quote in the paperSubstantial claim - Findingown data
All eight spike epitopes recognized by BNT162b2-elicited CD8+ T cells were shared by the vaccine-targeted SARS-CoV-2 isolate and by the B.1.1.7, P.1 and B.1.351 lineages.
“All eight S epitopes recognized by BNT162b2-elicited CD8 + T cells were shared by the vaccine-targeted SARS-CoV-2 isolate, and by B.1.1.7,P.1 and B.1.351lineages.”
Quote in the paperSubstantial claim - Findingown data
In the strongest responders, spike-specific CD4+ T cell responses exceeded individual memory responses to CMV, EBV, influenza and tetanus toxoid by more than tenfold.
“In the strongest-responding individuals, the S-specific CD4 + T cell responses were more than tenfold the individual memory responses to common viruses and recall antigens (cytomegalovirus (CMV), Epstein-Barr virus (EBV), influenza virus and tetanus toxoid) (Fig. 2b, Extended Data Fig. 5c).”
Quote in the paperNot a substantial claim - Findingown data
One participant had a de novo CD4+ T cell response only against spike pool 2.
“One participant had a de novo response only against S pool 2.”
Quote in the paperNot a substantial claim - Findingown data
Among the 34 participants with detectable CD8+ T cell responses, the strongest spike-pool-1 responses (above the third quartile) occurred in those without pre-existing spike-pool-2-specific responses.
“Of note, the strongest responses (higher than third quartile) against S pool 1 among the 34 participants with detectable CD8 + T cell responses were observed in those without pre-existing S-pool-2-specific responses.”
Quote in the paperNot a substantial claim - Findingown data
Potent memory T cell responses were observed throughout the full nine-week period after the booster.
“We observed potent memory T cell responses for the full observation period (of nine weeks after the booster dose).”
Quote in the paperSubstantial claim - Findingown data
Seven participants had pre-existing CD8+ T cell responses to spike pool 2 that vaccination did not further augment.
“In seven participants, we detected pre-existing CD8 + T cell responses to S pool 2 that were not further augmented by vaccination.”
Quote in the paperNot a substantial claim - Findingown data
CD8+ responses measured by ELISpot and intracellular staining in bulk PBMCs underestimated the true magnitude of the poly-specific cellular immune response compared with the pMHC multimer assay, which samples only discrete predefined reactivities.
“Compared to the pMHC multimer assay (which non-comprehensively samples discrete, predefined T cell reactivities), we found that the CD8 + responses determined by ELISpot and intracellular staining in bulk PBMCs underestimated the true magnitude of the poly-specific cellular immune response (Extended Data Fig. 7g).”
Quote in the paperSubstantial claim - Findingown data
IFNγ+ CD8+ T cells specific to spike pool 1 reached up to about 1% of total peripheral blood CD8+ T cells.
“Fractions of IFNγ + CD8 + T cells specific to S pool 1 constituted up to about 1% of total peripheral blood CD8 + T cells (Extended Data Fig. 7d).”
Quote in the paperNot a substantial claim - Findingown data
In the B.1.1.298 lineage, one of the eight epitopes had a single amino acid alteration.
“In the B.1.1.298lineage, one epitope was altered in a single amino acid.”
Quote in the paperNot a substantial claim - Findingown data
In those three participants, vaccination amplified the pre-existing spike-pool-2 responses by 3-, 5- or 13-fold.
“In these three participants, the pre-existing S-pool-2 responses were amplified by vaccination in the range of 3-, 5-or 13-fold.”
Quote in the paperNot a substantial claim - Findingreasoning
In each participant, the sum of identified single-epitope T cell responses exceeded the overall T cell response measured by ELISpot and intracellular staining.
“Nonetheless, in each participant the magnitude of the sum of the identified single-epitope T cell responses exceeded their overall T cell response measured by ELISpot and intracellular staining assay”
Quote in the paperNot a substantial claim - Findingown data
Among the 34 participants with pre-vaccination PBMCs, 30 (88.2%) developed de novo CD4+ T cell responses against both spike peptide pools.
“Thirty of the 34 participants with available pre-vaccination peripheral blood mononuclear cells (PBMCs) (88.2%) had de novo CD4 + T cell responses against both of the S pools.”
Quote in the paperSubstantial claim - Findingown data
All eight identified epitopes are fully conserved in the B.1.351, B.1.1.7 and P.1 lineages.
“All eight epitopes are fully conserved in the B.1.351, the B.1.1.7 (first identified in the UK) and P.1 (first identified in Brazil) lineages (Extended Data Fig. 7f).”
Quote in the paperSubstantial claim - Findingown data
The mean fraction of spike-specific IFNγ+ or IL-2+ CD4+ and CD8+ T cells among total circulating T cells after BNT162b2 was higher than in COVID-19 convalescent individuals.
“The mean fraction of S-specific IFNγ + or IL-2 + CD4 + and CD8 + T cells induced by BNT162b2 within total circulating T cells was higher than that we detected in individuals who had recovered from COVID-19 (Extended Data Fig. 7b, d).”
Quote in the paperSubstantial claim - Findingown data
In both assay systems, CD4+ and CD8+ T cell cytokine production against full SARS-CoV-2 spike peptide pools exceeded responses against the RBD peptide pool.
“In both assay systems, the cytokine production of CD4 + and CD8 + T cells in response to peptide pools comprising full SARS-CoV-2 S exceeded the responses against the RBD peptide pool”
Quote in the paperSubstantial claim - Findingown data
The identified pMHC multimer-positive spike-specific CD8+ T cells had an early-differentiated, central or effector memory phenotype on day 29.
“The pMHC multimer + S-specific CD8 + T cells that we identified were of an early-differentiated, central or effector memory phenotype on day 29 (Fig. 4c).”
Quote in the paperNot a substantial claim - Findingown data
No baseline response to S pool 2 was present in the 1-μg dose cohort.
“Data from the 1-μg dose cohort are excluded, as no baseline response to S pool 2 was present in this cohort.”
Quote in the paperNot a substantial claim - Interpretationreasoning
Therefore, the pMHC multimers visualize only a fraction of the full vaccine-induced repertoire in each of the three participants.
“Consequently, the pMHC multimers visualize only a fraction of the full vaccine-induced repertoire for each of the three participants.”
Quote in the paperSubstantial claim - Study design and conductreasoning
The single-epitope-reactive T cell set for each individual was identified by a candidate approach not designed to capture the full spectrum of that individual's vaccine-induced reactivities across all restriction elements.
“The set of single-epitope-reactive T cells for each individual was identified by a candidate approach that was not designed to capture the full spectrum of the vaccine-induced reactivities of that individual across all their restriction elements.”
Quote in the paperSubstantial claim - Interpretationown data
The robust IFNγ and IL-2 expression and low IL-4 levels in BNT162b2-induced CD4+ T cells indicate a T helper 1 profile.
“Robust expression of IFNγ and IL-2, and low levels of IL-4, in BNT162b2-induced CD4 + T cells indicated a T helper 1 cell profile.”
Quote in the paperSubstantial claim - Study design and conductcitation
With sera from individuals who had recovered from COVID-19, the fluorescent neutralization assay gave results comparable to the conventional plaque reduction neutralization assay.
“With sera from patients who had recovered from COVID-19, the fluorescent neutralization assay produced comparable results to the conventional plaque reduction neutralization assay 43 .”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [43] Moodie, Z., Huang, Y., Gu, L., Hural, J. & Self, S. G. Statistical positivity criteria for the analysis of ELISpot assay data in HIV-1 vaccine trials. J. Immunol. Methods 315, 121–132 (2006). source
- Interpretationreasoning
The breadth and poly-specificity of CD8+ and CD4+ T cell responses, together with the linear nature of T cell epitopes that reduces susceptibility to conformation-driven effects of single amino acid changes, may mitigate immune escape by new variant strains.
“The breadth and poly-specific nature of CD8 + and CD4 + T cell responses, and the linear nature of T cell epitopes that make them less Nature | Vol 595 | 22 July 2021 | 577 susceptible to the secondary conformation-driven effects of a single amino acid variation, may mitigate the risk of immune escape of new variant strains.”
Quote in the paperSubstantial claim
- May combine two claims. 56
- Classified as probably not a substantial claim. 47
May combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansThe US trial elicited robust S1-binding IgG concentrations and neutralizing titres against wild-type Wuhan-Hu-1 SARS-CoV-2.
“Robust concentrations of S1-binding immunoglobulin G (IgG) and neutralizing titres against a SARS-CoV-2 strain with the wild-type (Wuhan-Hu-1) S sequence were elicited.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
The Immunogenicity section (page unavailable) reports boosted antigen-binding IgG and neutralizing responses in the US trial; Figure 4 identifies the IgG measure as S1-binding. The methods identify the neutralization-test strain as USA_WA1/2020, but our copy does not establish that it had the wild-type Wuhan-Hu-1 S sequence. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansBoth BNT162b1 and BNT162b2 are pharmacologically optimized N1-methylpseudouridine nucleoside-modified mRNAs given intramuscularly in a prime-boost regimen.
“Both of the candidates are pharmacologically optimized 15,16 , N 1 -methylpseudouridine nucleoside-modified mRNAs 17 that are administered intramuscularly in a prime-boost regimen 21”
Quote in the paperNot a substantial claim2 of 4 sources checked- cites [15] Holtkamp, S. et al. Modification of antigen-encoding RNA increases stability, translational efficacy, and T-cell stimulatory capacity of dendritic cells. Blood 108, 4009–4017 (2006). source
- cites [16] Orlandini von Niessen, A. G. et al. Improving mRNA-based therapeutic gene delivery by expression-augmenting 3′ UTRs identified by cellular library screening. Mol. Ther. 27, 824–836 (2019). source
- cites [17] Karikó, K. et al. Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability. Mol. Ther. 16, 1833–1840 (2008). source
The Results and Materials and Methods describe pseudouridine-modified mRNA, and the Results report improved translation. They do not identify or test N1-methylpseudouridine, the specific modification attributed to this source by citation 17. The vaccine identities and prime-boost regimen are attached to other citations in the sentence. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [21] Taylor, D. N. et al. Development of VAX128, a recombinant hemagglutinin (HA) influenza-flagellin fusion vaccine with improved safety and immune response. Vaccine 30, 5761–5769 (2012). source
May combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansBNT162b2 demonstrated 95% efficacy against COVID-19 in a phase-II/III trial, and real-world data confirm it is highly effective at preventing COVID-19, hospitalization and death from SARS-CoV-2 infection.
“The vaccine showed 95% efficacy for protection against COVID-19 in a phase-II/III trial 1 and emerging real-world data confirm that BNT162b2 is highly effective in preventing COVID-19 and hospitalization and death associated with SARS-CoV-2 infection [3][4][5] .”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [1] Polack, F. P. et al. Safety and efficacy of the BNT162b2 mRNA Covid-19 vaccine. N. Engl. J. Med. 383, 2603–2615 (2020). source
- cites [3][4][5]
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansSeven days after a 30-μg booster, sera from younger (18-55 years) and older (65-85 years) adults had 50% neutralizing GMTs 3.8-fold and 1.6-fold the GMT of COVID-19 convalescent samples, respectively.
“Geometric mean 50% neutralizing titres (GMTs) of sera drawn from younger (18-55 years) and older (65-85 years) adults seven days after the booster dose of 30 μg BNT162b2 were 3.8-fold and 1.6-fold, respectively, the GMT of samples from individuals who had recovered from COVID-19.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansmRNA production and lipid nanoparticle formulation are fast and highly scalable, making the technology suitable for rapid vaccine development and supply during pandemics.
“mRNA production and lipid nanoparticle formulation are fast and highly scalable, which renders this technology suitable for the rapid development and supply of vaccines during pandemic scenarios 11,12 .”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [11] Pardi, N., Hogan, M. J., Porter, F. W. & Weissman, D. mRNA vaccines – a new era in vaccinology. Nat. Rev. Drug Discov. 17, 261–279 (2018). source
The Good manufacturing practice production section says mRNA can be produced rapidly in a small facility and is suitable for rapid response to emerging infectious diseases; the Abstract describes its manufacturing as potentially scalable. The Progress in mRNA vaccine delivery section identifies lipid nanoparticles as commonly used delivery tools, but the copy does not establish that their formulation is fast and highly scalable. The GMP section also notes that some production components were available only at limited scale, so rapid pandemic-scale supply is not established. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [12] Maruggi, G., Zhang, C., Li, J., Ulmer, J. B. & Yu, D. mRNA as a transformative technology for vaccine development to control infectious diseases. Mol. Ther. 27, 757–772 (2019). source
May combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansBNT162b2 uses lipid-nanoparticle-formulated mRNA technology that delivers the immunogen's genetic information to antigen-presenting cells and elicits potent immune responses.
“BNT162b2 is based on lipid-nanoparticle-formulated mRNA vaccine technology, which delivers precise genetic information of the immunogen to antigen-presenting cells and elicits potent immune responses 7 .”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [7] Pardi, N. et al. Nucleoside-modified mRNA vaccines induce potent T follicular helper and germinal center B cell responses. J. Exp. Med. 215, 1571–1588 (2018). source
The Results describe lipid-nanoparticle-formulated mRNA producing protein after delivery in mice, and the Discussion reports strong immune responses in mice and rhesus macaques. The Results identify skin antigen-presenting cells as a rationale for the injection site, but do not establish delivery specifically to those cells. The paper studies the vaccine platform, not BNT162b2, so it does not verify the product-specific claim. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
FindingcitationAs in the US phase-I/II trial, prime-boost vaccination with 10-30 μg BNT162b2 elicited serum GMTs that after an initial decline remained stable for the entire nine-week post-booster follow-up, at or above the GMTs of COVID-19 convalescent individuals.
“As reported for the phase-I/II trial in the USA 2 , prime-boost vaccination with 10 to 30 μg of BNT162b2 elicited GMTs of sera that-after an initial decline-remained stable for the entire follow-up of nine weeks after the booster dose, in the range of or higher than GMTs in individuals who had recovered from COVID-19.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationSARS-CoV-2 spike-derived CD8+ T cell epitopes after natural infection, including the immunodominant HLA-A*0201-restricted peptide YLQPRTFLL also identified here, have been published, but this is to our knowledge the first report of epitopes recognized by vaccine-induced T cells.
“Although SARS-CoV-2 S-derived CD8 + T cell epitopes after natural infection have previously been published (including the immunodominant HLA-A*0201-restricted peptide YLQPRTFLL that is also identified in this Article) 37,38 , to our knowledge this is the first report of epitopes recognized by vaccine-induced T cells.”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [37] Xie, X. et al. Neutralization of SARS-CoV-2 spike 69/70 deletion, E484K and N501Y variants by BNT162b2 vaccine-elicited sera. Nat. Med. 27, 620–621 (2021). source
Split into 2 atoms — 0 confirmed, 0 partially supported, 0 disputed, 0 misattributed, 2 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured - cites [38] O’Toole, Á. et al. Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y–V2, https://virological.org/t/tracking-the-international-spread-of-sars-cov-2-lineages-b-1–1-7-and-b-1–351–501y-v2/592 (2021). source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationTo allow comparison with previously reported data on BioNTech-Pfizer RNA COVID-19 vaccines, sera for neutralizing titers were analyzed as previously described.
“To enable the comparison of vaccine-induced serum neutralizing titres to those previously reported for BioNTech-Pfizer RNA vaccines for COVID-19, sera were analysed as previously described 2,13,14 .”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
- cites [13] Mulligan, M. J. et al. Phase I/II study of COVID-19 RNA vaccine BNT162b1 in adults. Nature 586, 589–593 (2020). source
- cites [14] Sahin, U. et al. COVID-19 vaccine BNT162b1 elicits human antibody and TH1 T cell responses. Nature 586, 594–599 (2020). source
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationTo allow comparison with previously reported data on BioNTech-Pfizer RNA COVID-19 vaccines, sera for S1- and RBD-binding IgG were analyzed as previously described.
“To enable the comparison of vaccine-induced S1-and RBD-binding IgG responses to previously reported data on the BioNTech-Pfizer RNA vaccines for COVID-19, sera were analysed as previously described 2,13,14 .”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
- cites [13] Mulligan, M. J. et al. Phase I/II study of COVID-19 RNA vaccine BNT162b1 in adults. Nature 586, 589–593 (2020). source
The Methods describe how vaccine-induced RBD-binding IgG was measured in sera, and Figure 4 reports those responses. Our copy does not describe an S1-binding IgG assay, so this source supports the RBD part of the cited method but not the S1 part. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [14] Sahin, U. et al. COVID-19 vaccine BNT162b1 elicits human antibody and TH1 T cell responses. Nature 586, 594–599 (2020). source
The RBD-binding IgG assay section describes how the paper analysed participant sera for RBD-binding IgG, supporting the citation as a previously described method. The passages found do not describe an S1-binding IgG assay, so this source alone does not support that part of the sentence. (LLM, conf=0.86)
Experimental — accuracy not yet measured
May combine two claims.
Findingown dataAmong convalescent serum donors, geometric mean neutralizing titers were 90 for symptomatic infections (n=35), 156 for asymptomatic infections (n=3), and 618 for hospitalized individuals (n=1).
“GMTs in subgroups of the donors were as follows: symptomatic infections, 90 (n = 35); asymptomatic infections, 156 (n = 3); hospitalized, 618 (n = 1).”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [2] Walsh, E. E. et al. Safety and immunogenicity of two RNA-based Covid-19 vaccine candidates. N. Engl. J. Med. 383, 2439–2450 (2020). source
- cites [13] Mulligan, M. J. et al. Phase I/II study of COVID-19 RNA vaccine BNT162b1 in adults. Nature 586, 589–593 (2020). source
The Methods section describes 38 convalescent serum donors, including 35 who had symptomatic infections and one who had been hospitalized; the remaining three were asymptomatic. The Immunogenicity section reports a neutralizing GMT of 94 for the panel as a whole, but our copy does not report subgroup GMTs of 90, 156, or 618. Page numbers are not available for these passages. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [14] Sahin, U. et al. COVID-19 vaccine BNT162b1 elicits human antibody and TH1 T cell responses. Nature 586, 594–599 (2020). source
Classified as probably not a substantial claim.
Study design and conductcitationFormation of pMHC complexes was validated in a bead-based flow cytometry assay.
“pMHC complexes were refolded with the easYmer technology (easYmer kit, ImmuneAware Aps), and complex formation was validated in a bead-based flow cytometry assay according to the manufacturer's instructions 49,50 .”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [49] Hadrup, S. R. et al. Parallel detection of antigen-specific T-cell responses by multidimensional encoding of MHC multimers. Nat. Methods 6, 520–526 (2009). source
- cites [50] Katoh, K., Rozewicki, J. & Yamada, K. D. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief. Bioinform. 20, 1160–1166 (2019). source
The cited paper’s “MSA of large data” section discusses MAFFT sequence-alignment methods, not pMHC complex formation. Searches for bead-based flow cytometry and easYmer refolding found no passage addressing the claimed validation; no page numbers are available in our copy. (LLM, conf=0.78)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim.
PremisecitationTwo pseudovirus variants carried either eight or ten mutations found in the S protein of the B.1.351 lineage.
“Two variants had either eight (D80A/D215G/Δ242-244/ K417N/E484K/N501Y/D614G/A701V) or ten mutations (L18F/D80A/ D215G/R246I/Δ242-244/K417N/E484K/N501Y/D614G/A701V) found in S of the B.1.351lineage (also referred to as 20C/501Y.V2) 40 .”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [40] Xie, X. et al. An infectious cDNA clone of SARS-CoV-2. Cell Host Microbe 27, 841–848 (2020). source
The Discussion describes an infectious SARS-CoV-2 clone and proposes using it to study future spike mutations; the Methods describe three silent marker mutations. Searches for B.1.351, pseudovirus variants, and the listed spike mutations found no passage in our copy addressing the claimed eight- or ten-mutation variants. The indexed passages provide no page numbers. (LLM, conf=0.76)
Experimental — accuracy not yet measured
May combine two claims.
Findingown dataFatigue and headache were the most common systemic adverse events, and only two participants reported mild fever.
“The most common systemic adverse events were fatigue and headache, and only two participants reported mild fever (Extended Data Fig. 2b, Extended Data Table 3b).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataAfter the booster on day 29, neutralizing GMTs rose substantially to 169, 195 or 312 in the 10-, 20- and 30-μg groups, respectively, but only minimally to 25 in the 1-μg group.
“After the booster dose (day 29), GMTs increased substantially to 169, 195 or 312 in participants immunized with 10 μg, 20 μg or 30 μg BNT162b2, respectively, but increased only minimally in participants immunized with 1 μg BNT162b2 (GMT of 25).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataOn day 85, GMTs ranged from 120 to 181 and were 1.3-1.9 times the GMT of 94 in COVID-19 convalescent individuals.
“At Article day 85, GMTs ranged from 120 to 181, and were 1.3-to 1.9-fold those of individuals who had recovered from COVID-19 (GMT of 94).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBy day 22, S1-binding IgG geometric mean concentrations had risen in every dose cohort, ranging from 49 to 1,161 U ml−1.
“On day 22, geometric mean concentrations (GMCs) of S1-binding IgG had increased in all dose cohorts and were in the range of 49 to 1,161 U ml -1 (Extended Data Fig. 4a).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataTransient chills were more frequent after the booster, dose-dependent and occasionally severe.
“Transient chills were more common after the boost, were dose-dependent and were occasionally severe.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataLocal reactions, mainly injection-site pain, were mild to moderate (grades 1-2) and similar in frequency and severity after priming and booster doses.
“Local reactions (predominantly pain at the injection site) were mild-to-moderate (grades 1 and 2) and of similar frequency and severity after the priming and booster doses (Extended Data Fig. 2a, Extended Data Table 3a).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataReactions began within 24 hours of immunization, peaked the next day, mostly resolved within 2-3 days, and either needed no treatment or were managed with simple measures such as paracetamol.
“Reactions had their onset within 24 h of immunization, peaked on the day after immunization and mostly resolved within 2 or 3 days, and either did not require treatment or could be managed with simple measures (such as paracetamol).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataEvery tested BNT162b2-immune serum neutralized all pseudoviruses, and no pseudovirus escaped neutralization.
“All of the BNT162b2-immune sera that we tested neutralized all the pseudoviruses, and no pseudovirus escaped neutralization.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansMost participants mounted strong IFNγ+ or IL-2+ CD8+ and CD4+ Th1 cell responses that remained detectable for the entire nine-week observation period after the booster.
“Most participants had a strong response of IFNγ + or IL-2 + CD8 + and CD4 + T helper type 1 cells, which was detectable throughout the full observation period of nine weeks following the boost.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataNo related serious adverse events, grade-4 reactions or withdrawals due to related adverse events occurred.
“We observed no related serious adverse events, no grade-4 reactions and no withdrawals owing to related adverse events.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown data§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansAt one week after the booster, epitope-specific CD8+ T cells with an early-differentiated effector-memory phenotype made up 0.02-2.92% of circulating CD8+ T cells and remained detectable at 0.01-0.28% eight weeks later.
“One week after the boost, epitope-specific CD8 + T cells of the early-differentiated effector-memory phenotype comprised 0.02-2.92% of total circulating CD8 + T cells and were detectable (0.01-0.28%) eight weeks later.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataA mild drop in blood lymphocyte counts and an increase in C-reactive protein occurred; both were transient, dose-dependent and within or close to normal laboratory levels.
“We observed a mild drop in blood lymphocyte counts and an increase in C-reactive protein, which are known pharmacodynamic markers of mRNA vaccines [19][20][21][22][23] ; both of these were transient, dose-dependent and within, or close to, laboratory-normal levels (Extended Data Fig. 3).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [19][20][21][22][23]
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
Findingown dataMuscle and joint pain were also more common after the booster and their severity was dose-dependent.
“Muscle pain and joint pain were also more common after the boost and showed dose-dependent severity.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe other three participants had de novo responses against spike pool 1 and low numbers of pre-existing spike-pool-2-reactive CD4+ T cells.
“The remaining three participants had de novo responses against S pool 1 and low numbers of pre-existing S-pool-2-reactive CD4 + T cells.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataSix of those seven participants also had a de novo response to spike pool 1, whose strength did not differ from responses in individuals without pre-existing spike-pool-2 responses.
“Six out of these seven participants had a concurrent de novo response to S pool 1, which did not differ in strength from those responses that we observed in individuals without pre-existing responses to S pool 2 (Extended Data Fig. 5e).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe fraction of vaccine-induced IFNγ- and IL-2-producing T cells rose strongly by day 29, fell until day 43 and then stabilized toward day 85.
“The fraction of IFNγ and IL-2 cytokine-producing T cells induced by the vaccine strongly increased by day 29, declined until day 43 and stabilized towards day 85 (Fig. 3b, Extended Data Fig. 7e).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn 34 of 37 participants (91.9%), most vaccine-induced spike-specific CD8+ T cell responses were strong, with magnitudes comparable to individual memory responses against CMV, EBV and influenza.
“The majority of vaccine-induced S-specific CD8 + T cell responses that we detected in 34 of 37 participants (91.9%) were strong, with magnitudes comparable to individual memory responses against CMV, EBV and influenza virus (Fig. 2a, b, Extended Data Fig. 5a-c).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataOn day 85, epitope-specific CD8+ T cells were unchanged in participants 1 and 2, while in participant 3 they differentiated toward CD45RA re-expressing cells co-expressing CD27 and CD28.
“On day 85, epitope-specific CD8 + T cells were unchanged in participants 1 and 2 and differentiated towards CD45RA re-expressing cells with CD27 and CD28 co-expression in participant 3”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn the B.1.1.298 lineage, which has not shown sustained human-to-human transmission, only one of the eight CD8+ T cell epitopes had a single-point mutation, which may or may not affect MHC binding.
“In the B.1.1.298lineage, which has not demonstrated sustained human-to-human transmission, only one of the eight CD8 + T cell epitopes showed a single-point mutation (which may or may not affect its binding to the respective MHC molecule).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe de novo CD8+ T cell responses targeted both spike pools in 22 participants, spike pool 1 in 10 and spike pool 2 in 2.
“These were directed against both (22 participants) or one of the S pools (S pool 1 in 10 participants and S pool 2 in 2 participants)”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataT cell response magnitude varied among individuals and, above 1 μg, was independent of dose level.
“The magnitude of the T cell responses varied between individuals and, above a dose level of 1 μg, was independent of dose level.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataAll evaluable BNT162b2 recipients mounted de novo spike-specific CD4+ T cell responses, and almost 90% mounted de novo CD8+ T cell responses.
“All evaluable participants vaccinated with BNT162b2 mounted de novo S-specific CD4 + T cell responses, and almost 90% of participants mounted de novo CD8 + T cell responses.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataSeveral epitopes were identified for each participant, representing eight distinct epitope-MHC pairs recognized by de novo-induced CD8+ T cells and distributed across the full length of spike.
“We identified several epitopes for each participant, representing eight different epitope-MHC pairs that were recognized by de novo-induced CD8 + T cells and were spread across the full length of S (Fig. 4a, b).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataOne participant had a strong pre-existing spike-pool-2-specific IFNγ+ CD4+ T cell response.
“We detected a strong pre-existing S-pool-2-specific IFNγ + CD4 + T cell response in one participant (Extended Data Fig. 7b).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataThe magnitude of spike-specific CD4+ T cell responses correlated positively with S1-binding IgG and with the strength of spike-specific CD8+ T cell responses.
“The magnitude of S-specific CD4 + T cell responses correlated positively with S1-binding IgG (Extended Data Fig. 6a) and, consistent with the concept of intramolecular help 30 , also with the strength of S-specific CD8 + T cell responses (Extended Data Fig. 6b).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [30] Sette, A. et al. Selective CD4+ T cell help for antibody responses to a large viral pathogen: deterministic linkage of specificities. Immunity 28, 847–858 (2008). source
May combine two claims.
Findingown dataIn agreement with ELISpot results, seven participants had pre-existing spike-pool-2-specific CD8+ T cell responses, and vaccination did not further amplify them in six.
“Confirming ELISpot findings, seven participants displayed pre-existing S-pool-2-specific CD8 + T cell responses, which were not further amplified by vaccination in six participants.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn 30-μg BNT162b2 recipients, both CD4+ and CD8+ T cell responses contracted after day 29 and by day 85 were higher than or similar to recall antigen memory responses.
“Both the CD4 + and the CD8 + T cell responses contracted after day 29 in participants vaccinated with 30 μg BNT162b2, and were higher than or in the range of recall antigen memory responses on day 85 (Fig. 2c, Extended Data Fig. 5f).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataA high proportion of boosted CD8+ T cells were early-differentiated central effector and memory cells; the population contracted and further differentiated toward an early-differentiated memory phenotype co-expressing CD27 and CD28.
“A high proportion of boosted CD8 + T cells were early-differentiated central effector and memory cells; the T cell population contracted and further differentiated towards an early-differentiated memory phenotype with co-expression of CD27 and CD28.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataEpitope-specific CD8+ T cell responses ranged from 0.02% to 2.92% of peripheral CD8+ T cells, with the largest expansions for HLA-A*0201-YLQPRTFLL, HLA-A*2402-QYIKWPWYI and HLA-B*3501-QPTESIVRF, and contracted to 0.01-0.28% by day 85.
“The magnitude of epitope-specific CD8 + T cell responses ranged from 0.02 to 2.92% of peripheral CD8 + T cells, with the most notable expansion for HLA-A*0201-YLQPRTFLL, HLA-A*2402-QYIKWPWYI and HLA-B*3501-QPTESIVRF, and contracted to 0.01 to 0.28% by day 85.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataA considerable fraction of vaccine-induced spike-specific CD4+ T cells secreted IFNγ, IL-2 or both, while IL-4-secreting T cells were barely detected.
“A considerable fraction of vaccine-induced, S-specific CD4 + T cells secreted IFNγ, IL-2 or both, whereas we barely detected T cells secreting the T helper 2 cell cytokine IL-4 (Fig. 3a, Extended Data Fig. 7a-c).”
Quote in the paperSubstantial claimMay combine two claims.
FindingcitationAt baseline, CD8+ T cell responses against the S1 subunit were not detected, but several individuals had pre-existing immune responses against the S2 subunit.
“Although CD8 + T cell responses against the S1 subunit were not detected at baseline, several individuals had pre-existing immune responses against the S2 subunit”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataAt doses of 10 μg or higher, the magnitude of CD4+ T cell responses was not dose-dependent and varied among individuals.
“At dose levels of 10 μg or higher, the magnitude of CD4 + T cell responses was not dose-dependent and varied between individuals.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataNeutralizing-antibody GMTs against the two B.1.351-lineage spike pseudoviruses were reduced, but no escape from neutralization occurred.
“Although neutralizing-antibody GMTs against the two pseudoviruses representing B.1.351-lineageS proteins were neutralized at reduced GMTs, no escape from neutralization was noted.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn the combined interval, any local reaction was reported in 42 of 48 participants (88%).
“Any local reaction, n (%) 7 (58) 12 (100) 12 (100) 1 1 (92) 42 (88)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn the combined interval, a grade 3 or higher systemic reaction was reported in 0% of the 1-μg dose cohort.
“Any grade ≥3 systemic reaction, n (%) 0 (0) 1 ( 8) 2 ( 17) 3 ( 25”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn the combined interval, a grade 3 or higher systemic reaction was reported in 17% of the 20-μg dose cohort.
“Any grade ≥3 systemic reaction, n (%) 0 (0) 1 ( 8) 2 ( 17) 3 ( 25”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Findingown dataSera were obtained from 38 individuals who had been infected with SARS-CoV-2 or recovered from COVID-19, aged 18-83 years, at least 14 days after PCR-confirmed diagnosis and while asymptomatic.
“Sera from individuals (n = 38) who had been infected with SARS-CoV-2 or recovered from COVID-19 were drawn from donors 18-83 years of age at least 14 days after PCR-confirmed diagnosis and at a time at which the participants were asymptomatic.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Findingown dataPBMC donors had asymptomatic or mild infections (n=16) or had been hospitalized (n=2).
“PBMC donors had asymptomatic or mild infections (n = 16, clinical score 1 and 2) or had been hospitalized (n = 2, clinical score 4 and 5).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the second dose, any systemic reaction was reported in 31 of 46 participants (67%).
“Any systemic reaction, n (%) 4 (36) 7 (64) 10 (83) 10 (83) 31 (67)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the first dose, any local reaction was reported in 40 of 48 participants (83%) across all dose cohorts.
“Any local reaction, n (%) 6 (50) 12 (100) 12 (100) 1 0 (83) 40 (83)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn the combined interval, a grade 3 or higher systemic reaction was reported in 25% of the 30-μg dose cohort.
“Any grade ≥3 systemic reaction, n (%) 0 (0) 1 ( 8) 2 ( 17) 3 ( 25”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn the combined interval, no participant (0 of 48) had a grade 3 or higher local reaction.
“Any grade ≥3 local reaction, n (%) 0 (0) 0 (0) 0 (0) 0 (0) 0 (0)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the first dose, no participant (0 of 48) had a grade 3 or higher local reaction.
“Any grade ≥3 local reaction, n (%) 0 (0) 0 (0) 0 (0) 0 (0) 0 (0)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataOne participant in the 1-μg dose cohort had non-treatment-related gastroenteritis on days 6-8.
“One participant in the 1-μg dose cohort (outlier on day 8 in a and highest dataset in b) presented with a non-treatment-related gastroenteritis on days 6-8.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn the combined interval, any systemic reaction was reported in 44 of 48 participants (92%).
“Any systemic reaction, n (%) 9 (75) 12 (100) 1 1 (92) 12 (100) 4 4 (92)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the second dose, any local reaction was reported in 35 of 46 participants (76%).
“Any local reaction, n (%) 4 (36) 10 (91) 10 (83) 11 (92) 35 (76)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the second dose, a grade 3 or higher systemic reaction was reported in 5 of 46 participants (12%).
“Any grade ≥3 systemic reaction, n (%) 0 (0) 1 (9) 1 (8) 3 (25) 5 (12)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the first dose, a grade 3 or higher systemic reaction was reported in 1 of 48 participants (2%).
“Any grade ≥3 systemic reaction, n (%) 0 (0) 0 (0) 1 (8) 0 (0) 1 (2)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the second dose, no participant (0 of 46) had a grade 3 or higher local reaction.
“Any grade ≥3 local reaction, n (%) 0 (0) 0 (0) 0 (0) 0 (0) 0 (0)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataAfter the first dose, any systemic reaction was reported in 39 of 48 participants (81%).
“Any systemic reaction, n (%) 9 (75) 12 (100) 9 (75) 9 (75) 39 (81)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn the combined interval, a grade 3 or higher systemic reaction was reported in 8% of the 10-μg dose cohort.
“Any grade ≥3 systemic reaction, n (%) 0 (0) 1 ( 8) 2 ( 17) 3 ( 25”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Findingown dataPBMC samples were collected from 18 individuals who had been infected with SARS-CoV-2 or recovered from COVID-19, aged 22-79 years, 30-62 days after PCR-confirmed diagnosis and while asymptomatic.
“PBMC samples from individuals (n = 18) who had been infected with SARS-CoV-2 or recovered from COVID-19 were collected from donors 22-79 years of age 30-62 days after PCR-confirmed diagnosis, when donors were asymptomatic.”
Quote in the paperSubstantial claimMay combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansObservational data show that BNT162b2 reduces laboratory-confirmed infection and viral load in infected individuals.
“The observational data also demonstrate that BNT162b2 reduces laboratory-confirmed infection, as well as viral load in individuals who are infected [3][4][5][6] .”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [3][4][5][6]
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansmRNA vaccines are molecularly well-defined and can be synthesized efficiently from DNA templates by in vitro transcription.
“mRNA vaccines are molecularly well-defined and synthesized efficiently from DNA templates by in vitro transcription [8][9][10] .”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8][9][10]
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
Interpretationown data§ BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humansBNT162b2 induces an adaptive humoral and poly-specific cellular immune response targeting epitopes conserved across a broad range of variants, at well-tolerated doses.
“In summary, BNT162b2 elicits an adaptive humoral and poly-specific cellular immune response against epitopes that are conserved in a broad range of variants, at”
- Also stated in: § BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans · plain
“BNT162b2 elicits an adaptive humoral and poly-specific cellular immune response against epitopes that are conserved in a broad range of variants, at well-tolerated doses.”
Quote in the paperSubstantial claim- Also stated in: § BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans · plain
May combine two claims.
InterpretationreasoningThis favourable phenotype can respond rapidly to infection but has limited IFNγ production capacity, making it less likely to be detected in functional T cell assays with PBMCs.
“This favourable phenotype has the potential to respond rapidly to infection, but has a limited capacity to produce IFNγ, and thus is less likely to be detected in functional T cell assays with PBMCs.”
Quote in the paperNot a substantial claimMay combine two claims.
Study design and conductnone givenThe clinical study's limitations include small sample size, lack of representation of populations of interest, and limited blood sample availability for deeper T cell analysis.
“The limitations of our clinical study include the small sample size, the lack of representation of populations of interest and limited availability of blood samples for a more in-depth T cell analysis.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataThe trial was conducted in Germany according to the Declaration of Helsinki and Good Clinical Practice Guidelines, with approval from an independent ethics committee and the competent regulatory authority.
“The trial was carried out in Germany in accordance with the Declaration of Helsinki and Good Clinical Practice Guidelines and with approval by an independent ethics committee (Ethik-Kommission of the Landesärztekammer Baden-Württemberg, Stuttgart, Germany) and the competent regulatory authority (Paul-Ehrlich Institute, Langen, Germany).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenAll participants with available data were included in the immunogenicity analyses.
“All participants with data available were included in the immunogenicity analyses.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenThe sample size for the reported part of the study was not determined by statistical hypothesis testing.
“The sample size for the reported part of the study was not based on statistical hypothesis testing.”
Quote in the paperNot a substantial claimMay combine two claims.
Study design and conductnone givenThe reporter virus produced plaque morphologies similar to wild-type virus and growth curves indistinguishable from wild-type virus.
“The reporter virus generates similar plaque morphologies and indistinguishable growth curves from wild-type virus.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenThe experiments were not randomized, and investigators were not blinded to allocation during experiments or outcome assessment.
“The experiments were not randomized, and investigators were not blinded to allocation during experiments and outcome assessment.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataBNT162b2 induces a broad immune response comprising SARS-CoV-2 spike-specific neutralizing antibodies and poly-specific CD4+ and CD8+ T cells.
“We show that BNT162b2 induces a broad immune response with SARS-CoV-2 S-specific neutralizing antibodies and poly-specific CD4 + and CD8 + T cells.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenProgression within a dose-escalation cohort and dose escalation required review of data by a safety review committee.
“Progression in that cohort and dose escalation required data review by a safety review committee.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataAll participants gave written informed consent.
“All participants provided written informed consent.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataOne participant in the 10-μg dose cohort had concurrent moderate nasopharyngitis unrelated to the study drug when the booster dose was due, did not receive the booster dose, and remained in the study for follow-up.
“Another participant (10-μg dose cohort) presented with concurrent moderate nasopharyngitis unrelated to the study drug when the booster dose was due; this participant did not receive the booster dose but remained on the study for follow-up.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataOne participant in the 1-μg dose cohort withdrew before the booster dose for reasons unrelated to the study drug and was unavailable for further follow-up.
“One participant (1-μg dose cohort) withdrew before the booster dose for reasons unrelated to the study drug and was not available for further follow-up.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenCell lines were tested for mycoplasma contamination after receipt and before expansion and cryopreservation.
“Cell lines were tested for mycoplasma contamination after receipt and before expansion and cryopreservation.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataSentinel dosing was carried out in every dose-escalation cohort.
“Sentinel dosing was performed in each dose-escalation cohort.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationAdverse event grading followed US Food and Drug Administration recommendations.
“Grading of adverse events was performed according to US Food and Drug Administration recommendations 53 .”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [53]
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataTwelve participants in each dose cohort received both the priming and booster doses, except that two participants missed the booster: one in the 1-μg cohort withdrew for a reason unrelated to the study drug, and one in the 10-μg cohort had concurrent nasopharyngitis not related to the study drug.
“Twelve participants per dose cohort received the priming and the booster doses, except for two participants who did not receive the booster dose owing to a study-drug-unrelated withdrawal by one participant (1-μg dose level), and concurrent nasopharyngitis not related to the study drug in another participant (10-μg dose level).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationOne pseudovirus variant carried four mutations from the S protein of the B.1.1.298 lineage: Y453F, D614G, I692V, and M1229I.
“One variant had four mutations from S of the B.1.1.298lineage (also referred to as SARS-CoV-2/hu/DK/CL-5/1) (Y453F/D614G/I692V/ M1229I) 28 .”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [28] Lassaunière, R. et al. Working paper on SARS-CoV-2 spike mutations arising in Danish mink, their 2 spread to humans and neutralization data, https://files.ssi.dk/Mink-cluster-5-short-report_AFO2 (2020).
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataParticipant PBMCs were tested without replicates in the flow cytometry analysis.
“Participant PBMCs were tested without replicates.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenEach serum was tested in duplicate.
“Each serum was tested in duplicate”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductreasoningUsing the geometric mean accounts for the non-normal distribution of antibody concentrations and titers that span several orders of magnitude.
“Using the geometric mean accounts for non-normal distribution of antibody concentrations and titres that span several orders of magnitude.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenOne participant in the 20-μg dose cohort who had a strong pre-existing CD4+ T cell response to S pool 2 was excluded.
“One participant from the 20-μg dose cohort with a strong pre-existing CD4 + T cell response to S pool 2 was excluded.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenParticipant PBMCs were tested without replicates in panels b-e.
“Participant PBMCs were tested without replicates (b-e).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataIFNγ ELISpot tests were run in duplicate and included a positive control.
“Tests were performed in duplicate and with a positive control (anti-CD3 monoclonal antibody CD3-2 (1:1,000; Mabtech)).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenSpot count data from two participants in the 20-μg dose cohort could not be normalized and were not plotted.
“Spot count data from two participants from the 20-μg dose cohort could not be normalized and are not plotted.”
- Also stated in: § Statistical analysis · plain
“Spot count data from two participants from the 20-μg dose cohort could not be normalized and are not plotted.”
Quote in the paperNot a substantial claim- Also stated in: § Statistical analysis · plain
The paper relies on this without support.
The sufficiency of neutralizing antibodies alone for full and long-lasting protective immunity to SARS-CoV-2, and the contribution of SARS-CoV-2-specific T cells, remain unclear.
“The sufficiency of neutralizing antibodies alone for full and long-lasting protective immunity to SARS-CoV-2, and the contribution of SARS-CoV-2-specific T cells, remain unclear.”
The paper relies on this without support.
The convalescent serum panel is a valid comparator for judging the magnitude of vaccine-induced antibody responses.
“Samples from individuals who had recovered from infection with SARS-CoV-2 or COVID-19 ('human convalescent samples' (HCS)) (n = 38) were obtained at least 14 days after PCR-confirmed diagnosis and at a time at which the donors were no longer symptomatic.”
The paper relies on this without support.
The reporter virus's similar plaque morphology and indistinguishable growth curves from wild-type virus mean it is a valid surrogate for wild-type SARS-CoV-2 in neutralization assays.
“The reporter virus generates similar plaque morphologies and indistinguishable growth curves from wild-type virus.”
The paper relies on this without support.
The identity of the USA_WA1/2020 strain S sequence to wild-type SARS-CoV-2 S means that neutralization titers against this strain reflect neutralization of wild-type SARS-CoV-2.
“The USA_WA1/2020 strain S is identical in sequence to the wild-type SARS-CoV-2 S (Wuhan-Hu-1 isolate).”
The paper relies on this without support.
The ELISpot normalization method adequately corrects for varying sample quality.
“To account for varying sample quality reflected in the number of spots in response to anti-CD3 antibody stimulation, we applied a normalization method that enabled direct comparison of spot counts and strength of response between individuals.”
The paper relies on this without support.
The pMHC multimer positivity criterion identifies true antigen-specific CD8+ T cells.
“CD8 + T cell reactivities were considered positive, when a clustered population was observed that was labelled with only two pMHC multimer colours.”
The paper relies on this without support.
The peptide pools covering the S sequence and RBD are representative of T cell epitopes.
“Two pools of 15-mer peptides overlapping by 11 amino acids and together covering the whole sequence of wild-type (no P2 S mutation) SARS-CoV-2 S”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The favorable safety profile observed during phase 1 testing of BNT162b2 was confirmed in the phase 2/3 portion of the trial.
“The favorable safety profile observed during phase 1 testing of BNT162b24,8 was confirmed in the phase 2/3 portion of the trial.”
From Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine (2020) · cites this paper as [8]
The Safety and tolerability section reports no related serious adverse events, grade-4 reactions, or withdrawals due to related adverse events in this phase-I/II study, supporting the description of a favorable early safety profile. The paper does not report phase-2/3 safety results confirming that profile; its Clinical trial design section identifies the presented data as coming from a phase-I/II trial. (LLM, conf=0.85)
Experimental — accuracy not yet measuredTwo 30-μg doses of BNT162b2 elicited high SARS-CoV-2 neutralizing antibody titers and robust antigen-specific CD8+ and Th1-type CD4+ T-cell responses in healthy men and women in the United States and Germany.
“Findings from studies conducted in the United States and Germany among healthy men and women showed that two 30-μg doses of BNT162b2 elicited high SARS-CoV-2 neutralizing antibody titers and robust antigen-specific CD8+ and Th1-type CD4+ T-cell responses.8”
From Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine (2020) · cites this paper as [8]
The reactogenicity profile of BNT162b2 represented mainly short-term local and systemic responses.
“In addition, the reactogenicity profile of BNT162b2 represented mainly short-term local (i.e., injection site) and systemic responses.”
From Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine (2020) · cites this paper as [8]
The 50% neutralizing geometric mean titers elicited by 30 μg of BNT162b2 in older and younger adults exceeded the geometric mean titer measured in a human convalescent serum panel, despite a lower neutralizing response in older adults than in younger adults.
“The 50% neutralizing geometric mean titers elicited by 30 μg of BNT162b2 in older and younger adults exceeded the geometric mean titer measured in a human convalescent serum panel, despite a lower neutralizing response in older adults than in younger adults.”
From Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine (2020) · cites this paper as [8]
The majority of COVID-19 vaccines evoke humoral and cellular immune responses against the SARS-CoV-2 spike protein; these responses may not prevent infection but robustly protect against severe COVID-19 for certain periods of time.
“The majority of COVID-19 vaccines are designed to evoke humoral and cellular immune responses against the SARS-CoV-2 spike protein — responses that may not prevent infection but robustly protect against severe COVID-19, at least for certain periods of time11,150–157.”
From COVID-19 and cellular senescence (2023) · cites this paper as [155]
The B.1.351 lineage virus was neutralized robustly, with a geometric mean titer well above the level seen after a single BNT162b2 dose, a point at which the C4591001 trial had already shown strong efficacy.
“Neutralizing activity against the B.1.351 lineage virus was robust at a geometric mean titer that was much higher than that obtained after one dose of BNT162b2, when strong efficacy was already observed in the C4591001 efficacy trial.1-3”
From Neutralizing Activity of BNT162b2-Elicited Serum (2021) · cites this paper as [3]
Safety and immunogenicity data of phase I/II trials of BNT162b1 and BNT162b2 supported the selection of BNT162b2 for a phase II/III trial based on milder systemic reactions and strong adaptive humoral and poly-specific cellular immune responses against epitopes conserved in diverse SARS-CoV-2 variants.
“The safety and immunogenicity data of the phase I/II trials of BNT162b1 and BNT162b2 supported the selection of BNT162b2 for a phase II/III trial based on milder systemic reactions82 and strong adaptive humoral and poly-specific cellular immune responses against epitopes conserved in diverse SARS-CoV-2 virus variants.81”
From COVID-19 mRNA vaccines: Platforms and current developments (2022) · cites this paper as [81]
BioNTech/Pfizer's modRNA platform RNA sequence used for BNT162b2 consists of human α-globin 5′ untranslated region (UTR), amino-terminal enhancer of split (AES), and mtRNR1 3′ UTR motifs and a poly(A) tail consisting of A30LA70.
“BioNTech/Pfizer's modRNA platform RNA sequence (used for BNT162b2) consists of human α-globin 5′ untranslated region (UTR), amino-terminal enhancer of split (AES), and mtRNR1 3′ UTR motifs91 and a poly(A) tail consisting of A30LA70 (linker [L]: GCAUAUGACU),81”
From COVID-19 mRNA vaccines: Platforms and current developments (2022) · cites this paper as [81]
The two vaccines against COVID-19 to first gain accelerated approvals and meet the required safety and efficacy standards were mRNA vaccines.
“The two vaccines against COVID-19 to first gain accelerated approvals and meet the required safety and efficacy standards were mRNA vaccines.8,81,82”
From COVID-19 mRNA vaccines: Platforms and current developments (2022) · cites this paper as [81]
BNT162b2 contains lipid nanoparticle-formulated mRNA encoding the SARS-CoV-2 S glycoprotein from the Wuhan-Hu-1 reference strain.
“The BNT162b2 COVID-19 mRNA vaccine contains lipid nanoparticle–formulated mRNA that encodes the SARS-CoV-2 S glycoprotein from the parental Wuhan reference strain (Wuhan-Hu-1) (11).”
From Neutralization of SARS-CoV-2 Omicron by BNT162b2 mRNA vaccine–elicited human sera (2022) · cites this paper as [11]
BNT162b2 vaccination induces strong polyepitopic T cell responses directed against multiple epitopes spanning the length of the S protein.
“BNT162b2 vaccination induces strong polyepitopic T cell responses, directed against multiple epitopes spanning the length of the S protein (11).”
From Neutralization of SARS-CoV-2 Omicron by BNT162b2 mRNA vaccine–elicited human sera (2022) · cites this paper as [11]
The BNT162b2 vaccine is a lipid nanoparticle formulation containing nucleoside-modified mRNA encoding the SARS-CoV-2 viral spike glycoprotein.
“The BNT162b2 vaccine (Pfizer–BioNTech) is a lipid nanoparticle formulation containing nucleoside-modified mRNA encoding the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) viral spike glycoprotein.1”
From Evaluation of the BNT162b2 Covid-19 Vaccine in Children 5 to 11 Years of Age (2022) · cites this paper as [1]
In phase I trials of BNT162b1 and BNT162b2, two 30 μg doses delivered 21 days apart induced high antibody and neutralizing titres and a robust CD4+ and CD8+ response with mild to moderate adverse events.
“In phase I trials of the two candidates, two 30 μg doses delivered 21 days apart induced high antibody and neutralizing titres and a robust CD4+ and CD8+ response with mild to moderate adverse events27,28,123,124.”
From mRNA vaccines for infectious diseases: principles, delivery and clinical translation (2021) · cites this paper as [28]
In healthy adults, two 30-μg doses of BNT162b2 elicited high neutralizing titers and robust antigen-specific CD4+ and CD8+ T-cell responses against SARS-CoV-2.
“In healthy adults, two 30-μg doses of BNT162b2 elicited high neutralizing titers and robust, antigen-specific CD4+ and CD8+ T-cell responses against SARS-CoV-2.3,4”
From Safety, immunogenicity, and efficacy of the BNT162b2 covid-19 vaccine in adolescents (2021) · cites this paper as [4]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
CD4 response total omits one participant
MajorThe paper describes 30 participants with de novo responses to both S pools and three more whose pre-existing S-pool-2 responses were amplified while they developed S-pool-1 responses. That makes 33 of 34 participants with induced or amplified responses to both pools, not 32 of 34.
Reported 32 · recomputed 33
“In conclusion, in 94.1% (32 out of 34) of participants, two doses of BNT162b2 induced poly-epitopic CD4 + T cell responses (de novo or amplified) directed against both N-and C-terminal portions of S.”
Grade-three systemic reaction percentage has the wrong denominator result
MinorThe table reports five participants with a grade ≥3 systemic reaction after dose 2 among 46 with follow-up information. That is approximately 11%, not the reported 12%.
Reported 12 · recomputed 10.869565
“Dose 2 up to day 7 after dose 2 nn 11 11 12 12 46 Any systemic reaction, n (%) 4 (36) 7 (64) 10 (83) 10 (83) 31 (67) Any grade ≥3 systemic reaction, n (%) 0 (0) 1 (9) 1 (8) 3 (25) 5 (12)”
CD8 response categories exceed their stated total
MinorThe categories listed for de novo CD8 responses contain 22, 10 and 2 participants, which sum to 34 rather than the stated 33.
Reported 33 · recomputed 34
“De novo S-specific CD8 + T cell responses were induced in 33 participants.These were directed against both (22 participants) or one of the S pools (S pool 1 in 10 participants and S pool 2 in 2 participants)”
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Humoral and T-cell responses to SARS-CoV-2 vaccination in patients receiving immunosuppression
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Antigen Presentation of mRNA-Based and Virus-Vectored SARS-CoV-2 Vaccines
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mRNA vaccines for COVID-19 and diverse diseases
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SARS-CoV-2-specific T cells in the changing landscape of the COVID-19 pandemic
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SARS-CoV-2 spike protein: pathogenesis, vaccines, and potential therapies
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- Authors
- Sahin, U., Muik, A., Vogler, I., Derhovanessian, E., Kranz, L. M., Vormehr, M., Quandt, J., Bidmon, N., Ulges, A., Baum, A., Pascal, K. E., Maurus, D., Brachtendorf, S., Lörks, V., Sikorski, J., Koch, P., Hilker, R., Becker, D., Eller, A.-K., Grützner, J., Tonigold, M., Boesler, C., Rosenbaum, C., Heesen, L., Kühnle, M.-C., Poran, A., Dong, J. Z., Luxemburger, U., Kemmer-Brück, A., Langer, D., Bexon, M., Bolte, S., Palanche, T., Schultz, A., Baumann, S., Mahiny, A. J., Boros, G., Reinholz, J., Szabó, G. T., Karikó, K., Shi, P.-Y., Fontes-Garfias, C., Perez, J. L., Cutler, M., Cooper, D., Kyratsous, C. A., Dormitzer, P. R., Jansen, K. U., & Türeci, Ö.
- Affiliations
- BioNTech (Germany) (DE)
- Regeneron (United States) (US)
- ORCID
- Sahin, Ugur
- Muik, Alexander
- Vogler, Isabel
- Kranz, Lena M.
- Vormehr, Mathias
- Quandt, Jasmin
- Baum, Alina
- Pascal, Kristen E.
- Maurus, Daniel
- Lörks, Verena
- Koch, Peter
- Hilker, Rolf
- Becker, Dirk
- Boesler, Carsten
- Kühnle, Marie-Cristine
- Poran, Asaf
- Dong, Jesse Z.
- Luxemburger, Ulrich
- Bexon, Martin
- Mahiny, Azita J.
- Boros, Gábor
- Reinholz, Jonas
- Szabó, Gábor T.
- Karikó, Katalin
- Shi, Pei-Yong
- Fontes-Garfias, Camila
- Kyratsous, Christos A.
- Dormitzer, Philip R.
- Venue
- Nature
- Published
- 2021-05-27
- Volume
- 595
- Issue
- 7868
- Pages
- 572-577
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W3164002264
- Semantic Scholar
- 21a565dbde52fc6e00043b8c1a3ed54b5540dfb6
- Cited by
- 845
- References
- 59
- Citations by year
- 2026: 39 · 2025: 92 · 2024: 97 · 2023: 183 · 2022: 288 · 2021: 222 · 2020: 2
- FWCI
- 52.83
- Type
- journal article
- Language
- en
- Update notices
- correction (2025-07-16)
- Open access
- bronze
- doi.org
- Licence
- Locations
- Nature (publishedVersion)
- medRxiv (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Topics
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › vaccines and immunoinformatics approaches
- Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
- Keywords
- BNT162b2, COVID-19 vaccines, SARS-CoV-2 spike protein, neutralizing antibodies, CD8+ T cells, CD4+ T helper cells, T cell epitopes, MHC alleles
- MeSH terms
- COVID-19, SARS-CoV-2, COVID-19 Vaccines
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