featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Cited by (428)

Items 101–200 of 428

1. Inflammatory fibroblasts mediate resistance to neoadjuvant therapy in rectal cancer
   Nicolas, Adele M., Pesic, Marina, Engel, Esther, Ziegler, Paul K., Diefenhardt, Markus, Kennel, Kilian B., Buettner, Florian, Conche, Claire, Petrocelli, Valentina, Elwakeel, Eiman et al. · 2022 · Cancer Cell
2. Transcriptional signature in microglia associated with Aβ plaque phagocytosis
   Grubman, Alexandra, Choo, Xin Yi, Chew, Gabriel, Ouyang, John F., Sun, Guizhi, Croft, Nathan P., Rossello, Fernando J., Simmons, Rebecca, Buckberry, Sam, Landin, Dulce Vargas et al. · 2021 · Nature Communications
3. Global characterization of macrophage polarization mechanisms and identification of M2-type polarization inhibitors
   He, Lizhi, Jhong, Jhih-Hua, Chen, Qi, Huang, Kai-Yao, Strittmatter, Karin, Kreuzer, Johannes, DeRan, Michael, Wu, Xu, Lee, Tzong-Yi, Slavov, Nikolai et al. · 2021 · Cell Reports
4. Comprehensive alpha, beta and delta cell transcriptomes reveal that ghrelin selectively activates delta cells and promotes somatostatin release from pancreatic islets
   DiGruccio, Michael R., Mawla, Alex M., Donaldson, Cynthia J., Noguchi, Glyn M., Vaughan, Joan, Cowing-Zitron, Christopher, van der Meulen, Talitha, Huising, Mark O. · 2016 · Molecular Metabolism
5. Acquired Resistance to BET-PROTACs (Proteolysis-Targeting Chimeras) Caused by Genomic Alterations in Core Components of E3 Ligase Complexes
   Zhang, Lu, Riley-Gillis, Bridget, Vijay, Priyanka, Shen, Yu · 2019 · Molecular Cancer Therapeutics
6. Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging
   Ma, Shuai, Sun, Shuhui, Geng, Lingling, Song, Moshi, Wang, Wei, Ye, Yanxia, Ji, Qianzhao, Zou, Zhiran, Wang, Si, He, Xiaojuan et al. · 2020 · Cell
7. Acetate Promotes T Cell Effector Function during Glucose Restriction
   Qiu, Jing, Villa, Matteo, Sanin, David E., Buck, Michael D., O’Sullivan, David, Ching, Reagan, Matsushita, Mai, Grzes, Katarzyna M., Winkler, Frances, Chang, Chih-Hao et al. · 2019 · Cell Reports
8. A blood atlas of COVID-19 defines hallmarks of disease severity and specificity
   Ahern, David J., Ai, Zhichao, Ainsworth, Mark, Allan, Chris, Allcock, Alice, Angus, Brian, Ansari, M. Azim, Arancibia-Cárcamo, Carolina V., Aschenbrenner, Dominik, Attar, Moustafa et al. · 2022 · Cell
9. LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance
   Cunha, Larissa D., Yang, Mao, Carter, Robert, Guy, Clifford, Harris, Lacie, Crawford, Jeremy C., Quarato, Giovanni, Boada-Romero, Emilio, Kalkavan, Halime, Johnson, Michael D.L. et al. · 2018 · Cell
10. Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response
    HIPSCI Consortium, Alasoo, Kaur, Rodrigues, Julia, Mukhopadhyay, Subhankar, Knights, Andrew J., Mann, Alice L., Kundu, Kousik, Hale, Christine, Dougan, Gordon, Gaffney, Daniel J. · 2018 · Nature Genetics
11. Two subsets of stem-like CD8+ memory T cell progenitors with distinct fate commitments in humans
    Galletti, Giovanni, De Simone, Gabriele, Mazza, Emilia M. C., Puccio, Simone, Mezzanotte, Claudia, Bi, Timothy M., Davydov, Alexey N., Metsger, Maria, Scamardella, Eloise, Alvisi, Giorgia et al. · 2020 · Nature Immunology
12. Replicative senescence dictates the emergence of disease-associated microglia and contributes to Aβ pathology
    Hu, Yanling, Fryatt, Gemma L., Ghorbani, Mohammadmersad, Obst, Juliane, Menassa, David A., Martin-Estebane, Maria, Muntslag, Tim A.O., Olmos-Alonso, Adrian, Guerrero-Carrasco, Monica, Thomas, Daniel et al. · 2021 · Cell Reports
13. Single-cell transcriptional profiles in human skeletal muscle
    Rubenstein, Aliza B., Smith, Gregory R., Raue, Ulrika, Begue, Gwénaëlle, Minchev, Kiril, Ruf-Zamojski, Frederique, Nair, Venugopalan D., Wang, Xingyu, Zhou, Lan, Zaslavsky, Elena et al. · 2020 · Scientific Reports
14. Lower Airway Dysbiosis Affects Lung Cancer Progression
    Tsay, Jun-Chieh J., Wu, Benjamin G., Sulaiman, Imran, Gershner, Katherine, Schluger, Rosemary, Li, Yonghua, Yie, Ting-An, Meyn, Peter, Olsen, Evan, Perez, Luisannay et al. · 2021 · Cancer Discovery
15. Dream: powerful differential expression analysis for repeated measures designs
    Hoffman, Gabriel E, Roussos, Panos · 2021 · Bioinformatics
16. Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines
    Cano-Gamez, Kiki, Soskic, Blagoje, Roumeliotis, Theodoros I., So, Ernest, Smyth, Deborah J., Baldrighi, Marta, Willé, David, Nakic, Nikolina, Esparza-Gordillo, Jorge, Larminie, Christopher G. C. et al. · 2020 · Nature Communications
17. Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes
    Robertson, Catherine C., Inshaw, Jamie R. J., Onengut-Gumuscu, Suna, Chen, Wei-Min, Santa Cruz, David Flores, Yang, Hanzhi, Cutler, Antony J., Crouch, Daniel J. M., Farber, Emily, Bridges, S. Louis et al. · 2021 · Nature Genetics
18. α-Ketoglutarate links p53 to cell fate during tumour suppression
    Morris, John P., Yashinskie, Jossie J., Koche, Richard, Chandwani, Rohit, Tian, Sha, Chen, Chi-Chao, Baslan, Timour, Marinkovic, Zoran S., Sánchez-Rivera, Francisco J., Leach, Steven D. et al. · 2019 · Nature
19. Thymic tuft cells promote an IL-4-enriched medulla and shape thymocyte development
    Miller, Corey N., Proekt, Irina, von Moltke, Jakob, Wells, Kristen L., Rajpurkar, Aparna R., Wang, Haiguang, Rattay, Kristin, Khan, Imran S., Metzger, Todd C., Pollack, Joshua L. et al. · 2018 · Nature
20. Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states
    Ma, Peijun, Amemiya, Haley M., He, Lorrie L., Gandhi, Shivam J., Nicol, Robert, Bhattacharyya, Roby P., Smillie, Christopher S., Hung, Deborah T. · 2023 · Cell
21. Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
    Wampach, Linda, Heintz-Buschart, Anna, Fritz, Joëlle V., Ramiro-Garcia, Javier, Habier, Janine, Herold, Malte, Narayanasamy, Shaman, Kaysen, Anne, Hogan, Angela H., Bindl, Lutz et al. · 2018 · Nature Communications
22. A non-canonical tricarboxylic acid cycle underlies cellular identity
    Arnold, Paige K., Jackson, Benjamin T., Paras, Katrina I., Brunner, Julia S., Hart, Madeleine L., Newsom, Oliver J., Alibeckoff, Sydney P., Endress, Jennifer, Drill, Esther, Sullivan, Lucas B. et al. · 2022 · Nature
23. Epigenetic memory of coronavirus infection in innate immune cells and their progenitors
    Cheong, Jin-Gyu, Ravishankar, Arjun, Sharma, Siddhartha, Parkhurst, Christopher N., Grassmann, Simon A., Wingert, Claire K., Laurent, Paoline, Ma, Sai, Paddock, Lucinda, Miranda, Isabella C. et al. · 2023 · Cell
24. An atlas of β-glucuronidases in the human intestinal microbiome
    Pollet, Rebecca M., D'Agostino, Emma H., Walton, William G., Xu, Yongmei, Little, Michael S., Biernat, Kristen A., Pellock, Samuel J., Patterson, Loraine M., Creekmore, Benjamin C., Isenberg, Hanna N. et al. · 2017 · Structure
25. Time of exercise specifies the impact on muscle metabolic pathways and systemic energy homeostasis
    Sato, Shogo, Basse, Astrid Linde, Schönke, Milena, Chen, Siwei, Samad, Muntaha, Altıntaş, Ali, Laker, Rhianna C., Dalbram, Emilie, Barrès, Romain, Baldi, Pierre et al. · 2019 · Cell Metabolism
26. Novel Alzheimer risk genes determine the microglia response to amyloid-β but not to TAU pathology
    Sierksma, Annerieke, Lu, Ashley, Mancuso, Renzo, Fattorelli, Nicola, Thrupp, Nicola, Salta, Evgenia, Zoco, Jesus, Blum, David, Buée, Luc, De Strooper, Bart et al. · 2020 · EMBO Molecular Medicine
27. Bioinformatics-Based Identification of Expanded Repeats: A Non-reference Intronic Pentamer Expansion in RFC1 Causes CANVAS
    Rafehi, Haloom, Szmulewicz, David J., Bennett, Mark F., Sobreira, Nara L.M., Pope, Kate, Smith, Katherine R., Gillies, Greta, Diakumis, Peter, Dolzhenko, Egor, Eberle, Michael A. et al. · 2019 · The American Journal of Human Genetics
28. Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development
    Marques, Sueli, van Bruggen, David, Vanichkina, Darya Pavlovna, Floriddia, Elisa Mariagrazia, Munguba, Hermany, Väremo, Leif, Giacomello, Stefania, Falcão, Ana Mendanha, Meijer, Mandy, Björklund, Åsa Kristina et al. · 2018 · Developmental Cell
29. SARS-CoV-2 receptor and entry genes are expressed by sustentacular cells in the human olfactory neuroepithelium
    Fodoulian, Leon, Tuberosa, Joel, Rossier, Daniel, Boillat, Madlaina, Kan, Chenda, Pauli, Véronique, Egervari, Kristof, Lobrinus, Johannes A., Landis, Basile N., Carleton, Alan et al. · 2020
30. Distinct structural classes of activating FOXA1 alterations in advanced prostate cancer
    Parolia, Abhijit, Cieslik, Marcin, Chu, Shih-Chun, Xiao, Lanbo, Ouchi, Takahiro, Zhang, Yuping, Wang, Xiaoju, Vats, Pankaj, Cao, Xuhong, Pitchiaya, Sethuramasundaram et al. · 2019 · Nature
31. Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses
    Xu, Heping, Ding, Jiarui, Porter, Caroline B.M., Wallrapp, Antonia, Tabaka, Marcin, Ma, Sai, Fu, Shujie, Guo, Xuanxuan, Riesenfeld, Samantha J., Su, Chienwen et al. · 2019 · Immunity
32. Human Pluripotent Stem Cell-Derived Organoids as Models of Liver Disease
    Ramli, Muhammad Nadzim Bin, Lim, Yee Siang, Koe, Chwee Tat, Demircioglu, Deniz, Tng, Weiquan, Gonzales, Kevin Andrew Uy, Tan, Cheng Peow, Szczerbinska, Iwona, Liang, Hongqing, Soe, Einsi Lynn et al. · 2020 · Gastroenterology
33. Inflammatory macrophage dependence on NAD+ salvage is a consequence of reactive oxygen species–mediated DNA damage
    Cameron, Alanna M., Castoldi, Angela, Sanin, David E., Flachsmann, Lea J., Field, Cameron S., Puleston, Daniel. J., Kyle, Ryan L., Patterson, Annette E., Hässler, Fabian, Buescher, Joerg M. et al. · 2019 · Nature Immunology
34. KDM5B promotes immune evasion by recruiting SETDB1 to silence retroelements
    Zhang, Shang-Min, Cai, Wesley L., Liu, Xiaoni, Thakral, Durga, Luo, Jiesi, Chan, Lok Hei, McGeary, Meaghan K., Song, Eric, Blenman, Kim R. M., Micevic, Goran et al. · 2021 · Nature
35. Novel antigen-presenting cell imparts Treg-dependent tolerance to gut microbiota
    Akagbosu, Blossom, Tayyebi, Zakieh, Shibu, Gayathri, Paucar Iza, Yoselin A., Deep, Deeksha, Parisotto, Yollanda Franco, Fisher, Logan, Pasolli, H. Amalia, Thevin, Valentin, Elmentaite, Rasa et al. · 2022 · Nature
36. Transcriptome analysis reveals tumor microenvironment changes in glioblastoma
    Hoogstrate, Youri, Draaisma, Kaspar, Ghisai, Santoesha A., van Hijfte, Levi, Barin, Nastaran, de Heer, Iris, Coppieters, Wouter, van den Bosch, Thierry P.P., Bolleboom, Anne, Gao, Zhenyu et al. · 2023 · Cancer Cell
37. Truncated stathmin-2 is a marker of TDP-43 pathology in frontotemporal dementia
    Prudencio, Mercedes, Humphrey, Jack, Pickles, Sarah, Brown, Anna-Leigh, Hill, Sarah E., Kachergus, Jennifer M., Shi, J., Heckman, Michael G., Spiegel, Matthew R., Cook, Casey et al. · 2020 · Journal of Clinical Investigation
38. An autoimmune stem-like CD8 T cell population drives type 1 diabetes
    Gearty, Sofia V., Dündar, Friederike, Zumbo, Paul, Espinosa-Carrasco, Gabriel, Shakiba, Mojdeh, Sanchez-Rivera, Francisco J., Socci, Nicholas D., Trivedi, Prerak, Lowe, Scott W., Lauer, Peter et al. · 2022 · Nature
39. Germline Chd8 haploinsufficiency alters brain development in mouse
    Gompers, Andrea L, Su-Feher, Linda, Ellegood, Jacob, Copping, Nycole A, Riyadh, M Asrafuzzaman, Stradleigh, Tyler W, Pride, Michael C, Schaffler, Melanie D, Wade, A Ayanna, Catta-Preta, Rinaldo et al. · 2017 · Nature Neuroscience
40. H3.3K27M Cooperates with Trp53 Loss and PDGFRA Gain in Mouse Embryonic Neural Progenitor Cells to Induce Invasive High-Grade Gliomas
    Pathania, Manav, De Jay, Nicolas, Maestro, Nicola, Harutyunyan, Ashot S., Nitarska, Justyna, Pahlavan, Pirasteh, Henderson, Stephen, Mikael, Leonie G., Richard-Londt, Angela, Zhang, Ying et al. · 2017 · Cancer Cell
41. BET bromodomain inhibition suppresses innate inflammatory and profibrotic transcriptional networks in heart failure
    Duan, Qiming, McMahon, Sarah, Anand, Priti, Shah, Hirsh, Thomas, Sean, Salunga, Hazel T., Huang, Yu, Zhang, Rongli, Sahadevan, Aarathi, Lemieux, Madeleine E. et al. · 2017 · Science Translational Medicine
42. Genomic and Transcriptomic Determinants of Therapy Resistance and Immune Landscape Evolution during Anti-EGFR Treatment in Colorectal Cancer
    Woolston, Andrew, Khan, Khurum, Spain, Georgia, Barber, Louise J., Griffiths, Beatrice, Gonzalez-Exposito, Reyes, Hornsteiner, Lisa, Punta, Marco, Patil, Yatish, Newey, Alice et al. · 2019 · Cancer Cell
43. Adaptable haemodynamic endothelial cells for organogenesis and tumorigenesis
    Palikuqi, Brisa, Nguyen, Duc-Huy T., Li, Ge, Schreiner, Ryan, Pellegata, Alessandro F., Liu, Ying, Redmond, David, Geng, Fuqiang, Lin, Yang, Gómez-Salinero, Jesus M. et al. · 2020 · Nature
44. The translation of non-canonical open reading frames controls mucosal immunity
    Jackson, Ruaidhrí, Kroehling, Lina, Khitun, Alexandra, Bailis, Will, Jarret, Abigail, York, Autumn G., Khan, Omair M., Brewer, J. Richard, Skadow, Mathias H., Duizer, Coco et al. · 2018 · Nature
45. Hallmarks of Alzheimer’s Disease in Stem-Cell-Derived Human Neurons Transplanted into Mouse Brain
    Espuny-Camacho, Ira, Arranz, Amaia M., Fiers, Mark, Snellinx, An, Ando, Kunie, Munck, Sebastian, Bonnefont, Jerome, Lambot, Laurie, Corthout, Nikky, Omodho, Lorna et al. · 2017 · Neuron
46. Complementarity and redundancy of IL-22-producing innate lymphoid cells
    Rankin, Lucille C, Girard-Madoux, Mathilde J H, Seillet, Cyril, Mielke, Lisa A, Kerdiles, Yann, Fenis, Aurore, Wieduwild, Elisabeth, Putoczki, Tracy, Mondot, Stanislas, Lantz, Olivier et al. · 2016 · Nature Immunology
47. Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase
    Patterson, Andrew, Rimal, Bipin, Collins, Stephanie, Granda, Megan, Koo, Imhoi, Solanka, Sumeet, Hoque, Nushrat, Gentry, Emily, Yan, Tingting, Bisanz, Jordan et al. · 2022
48. KMT2D Deficiency Impairs Super-Enhancers to Confer a Glycolytic Vulnerability in Lung Cancer
    Alam, Hunain, Tang, Ming, Maitituoheti, Mayinuer, Dhar, Shilpa S., Kumar, Manish, Han, Chae Young, Ambati, Chandrashekar R., Amin, Samir B., Gu, Bingnan, Chen, Tsai-Yu et al. · 2020 · Cancer Cell
49. Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk
    Castel, Stephane E., Cervera, Alejandra, Mohammadi, Pejman, Aguet, François, Reverter, Ferran, Wolman, Aaron, Guigo, Roderic, Iossifov, Ivan, Vasileva, Ana, Lappalainen, Tuuli · 2018 · Nature Genetics
50. A transcriptional switch governs fibroblast activation in heart disease
    Alexanian, Michael, Przytycki, Pawel F., Micheletti, Rudi, Padmanabhan, Arun, Ye, Lin, Travers, Joshua G., Gonzalez-Teran, Barbara, Silva, Ana Catarina, Duan, Qiming, Ranade, Sanjeev S. et al. · 2021 · Nature
51. A Map of Transcriptional Heterogeneity and Regulatory Variation in Human Microglia
    Young, Adam M. H., Kumasaka, Natsuhiko, Calvert, Fiona, Hammond, Timothy R., Knights, Andrew, Panousis, Nikolaos, Park, Jun Sung, Schwartzentruber, Jeremy, Liu, Jimmy, Kundu, Kousik et al. · 2021 · Nature Genetics
52. Identification of osteoclast-osteoblast coupling factors in humans reveals links between bone and energy metabolism
    Weivoda, Megan M., Chew, Chee Kian, Monroe, David G., Farr, Joshua N., Atkinson, Elizabeth J., Geske, Jennifer R., Eckhardt, Brittany, Thicke, Brianne, Ruan, Ming, Tweed, Amanda J. et al. · 2020 · Nature Communications
53. Alzheimer’s-associated PLCγ2 is a signaling node required for both TREM2 function and the inflammatory response in human microglia
    Andreone, Benjamin J., Przybyla, Laralynne, Llapashtica, Ceyda, Rana, Anil, Davis, Sonnet S., van Lengerich, Bettina, Lin, Karin, Shi, Ju, Mei, Yuan, Astarita, Giuseppe et al. · 2020 · Nature Neuroscience
54. Maternal immune activation results in complex microglial transcriptome signature in the adult offspring that is reversed by minocycline treatment
    Mattei, D, Ivanov, A, Ferrai, C, Jordan, P, Guneykaya, D, Buonfiglioli, A, Schaafsma, W, Przanowski, P, Deuther-Conrad, W, Brust, P et al. · 2017 · Translational Psychiatry
55. Elevated paternal glucocorticoid exposure alters the small noncoding RNA profile in sperm and modifies anxiety and depressive phenotypes in the offspring
    Short, A K, Fennell, K A, Perreau, V M, Fox, A, O’Bryan, M K, Kim, J H, Bredy, T W, Pang, T Y, Hannan, A J · 2016 · Translational Psychiatry
56. A20 critically controls microglia activation and inhibits inflammasome-dependent neuroinflammation
    Voet, Sofie, Mc Guire, Conor, Hagemeyer, Nora, Martens, Arne, Schroeder, Anna, Wieghofer, Peter, Daems, Carmen, Staszewski, Ori, Vande Walle, Lieselotte, Jordao, Marta Joana Costa et al. · 2018 · Nature Communications
57. Molecular and functional variation in iPSC-derived sensory neurons
    HIPSCI Consortium, Schwartzentruber, Jeremy, Foskolou, Stefanie, Kilpinen, Helena, Rodrigues, Julia, Alasoo, Kaur, Knights, Andrew J., Patel, Minal, Goncalves, Angela, Ferreira, Rita et al. · 2018 · Nature Genetics
58. Microglia contribute to the propagation of Aβ into unaffected brain tissue
    d’Errico, Paolo, Ziegler-Waldkirch, Stephanie, Aires, Vanessa, Hoffmann, Philippe, Mezö, Charlotte, Erny, Daniel, Monasor, Laura Sebastian, Liebscher, Sabine, Ravi, Vidhya M., Joseph, Kevin et al. · 2022 · Nature Neuroscience
59. Activation of the pluripotency factor OCT4 in smooth muscle cells is atheroprotective
    Cherepanova, Olga A, Gomez, Delphine, Shankman, Laura S, Swiatlowska, Pamela, Williams, Jason, Sarmento, Olga F, Alencar, Gabriel F, Hess, Daniel L, Bevard, Melissa H, Greene, Elizabeth S et al. · 2016 · Nature Medicine
60. DISCO: A database of Deeply Integrated human Single-Cell Omics data
    Li, Mengwei, Zhang, Xiaomeng, Ang, Kok Siong, Ling, Jingjing, Sethi, Raman, Lee, Nicole Yee Shin, Ginhoux, Florent, Chen, Jinmiao · 2022 · Nucleic Acids Research
61. Neuron-specific signatures in the chromosomal connectome associated with schizophrenia risk
    Rajarajan, Prashanth, Borrman, Tyler, Liao, Will, Schrode, Nadine, Flaherty, Erin, Casiño, Charlize, Powell, Samuel, Yashaswini, Chittampalli, LaMarca, Elizabeth A., Kassim, Bibi et al. · 2018 · Science
62. Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes
    Grarup, Niels, Moltke, Ida, Andersen, Mette K., Dalby, Maria, Vitting-Seerup, Kristoffer, Kern, Timo, Mahendran, Yuvaraj, Jørsboe, Emil, Larsen, Christina V. L., Dahl-Petersen, Inger K. et al. · 2018 · Nature Genetics
63. Smooth Muscle Cell Reprogramming in Aortic Aneurysms
    Chen, Pei-Yu, Qin, Lingfeng, Li, Guangxin, Malagon-Lopez, Jose, Wang, Zheng, Bergaya, Sonia, Gujja, Sharvari, Caulk, Alexander W., Murtada, Sae-Il, Zhang, Xinbo et al. · 2020 · Cell Stem Cell
64. Probiotic Bacillus subtilis protects against α-synuclein aggregation in C. elegans
    Goya, María Eugenia, Xue, Feng, Sampedro-Torres-Quevedo, Cristina, Arnaouteli, Sofia, Riquelme-Dominguez, Lourdes, Romanowski, Andrés, Brydon, Jack, Ball, Kathryn L., Stanley-Wall, Nicola R., Doitsidou, Maria · 2020 · Cell Reports
65. Lats1/2 Sustain Intestinal Stem Cells and Wnt Activation through TEAD-Dependent and Independent Transcription
    Li, Qi, Sun, Yang, Jarugumilli, Gopala K., Liu, Shun, Dang, Kyvan, Cotton, Jennifer L., Xiol, Jordi, Chan, Pui Yee, DeRan, Michael, Ma, Lifang et al. · 2020 · Cell Stem Cell
66. Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF
    Kang, Kyuho, Park, Sung Ho, Chen, Janice, Qiao, Yu, Giannopoulou, Eugenia, Berg, Karen, Hanidu, Adedayo, Li, Jun, Nabozny, Gerald, Kang, Keunsoo et al. · 2017 · Immunity
67. CD4+ resident memory T cells dominate immunosurveillance and orchestrate local recall responses
    Beura, Lalit K., Fares-Frederickson, Nancy J., Steinert, Elizabeth M., Scott, Milcah C., Thompson, Emily A., Fraser, Kathryn A., Schenkel, Jason M., Vezys, Vaiva, Masopust, David · 2019 · Journal of Experimental Medicine
68. Histone Deacetylases 1 and 2 Regulate Microglia Function during Development, Homeostasis, and Neurodegeneration in a Context-Dependent Manner
    Datta, Moumita, Staszewski, Ori, Raschi, Elena, Frosch, Maximilian, Hagemeyer, Nora, Tay, Tuan Leng, Blank, Thomas, Kreutzfeldt, Mario, Merkler, Doron, Ziegler-Waldkirch, Stephanie et al. · 2018 · Immunity
69. Brain delivery and activity of a lysosomal enzyme using a blood–brain barrier transport vehicle in mice
    Ullman, Julie C., Arguello, Annie, Getz, Jennifer A., Bhalla, Akhil, Mahon, Cathal S., Wang, Junhua, Giese, Tina, Bedard, Catherine, Kim, Do Jin, Blumenfeld, Jessica R. et al. · 2020 · Science Translational Medicine
70. The ovarian cancer oncobiome
    Banerjee, Sagarika, Tian, Tian, Wei, Zhi, Shih, Natalie, Feldman, Michael D., Alwine, James C., Coukos, George, Robertson, Erle S. · 2017 · Oncotarget
71. Autophagy enables microglia to engage amyloid plaques and prevents microglial senescence
    Choi, Insup, Wang, Minghui, Yoo, Seungyeul, Xu, Peng, Seegobin, Steven P., Li, Xianting, Han, Xian, Wang, Qian, Peng, Junmin, Zhang, Bin et al. · 2023 · Nature Cell Biology
72. Induced Pluripotent Stem Cell Differentiation Enables Functional Validation of GWAS Variants in Metabolic Disease
    Warren, Curtis R., O’Sullivan, John F., Friesen, Max, Becker, Caroline E., Zhang, Xiaoling, Liu, Poching, Wakabayashi, Yoshiyuki, Morningstar, Jordan E., Shi, Xu, Choi, Jihoon et al. · 2017 · Cell stem cell
73. HIF-2 complex dissociation, target inhibition, and acquired resistance with PT2385, a first-in-class HIF-2 inhibitor, in patients with clear cell renal cell carcinoma
    Courtney, Kevin D., Ma, Yuanqing, Diaz de Leon, Alberto, Christie, Alana, Xie, Zhiqun, Woolford, Layton, Singla, Nirmish, Joyce, Allison, Hill, Haley, Madhuranthakam, Ananth J. et al. · 2020 · Clinical Cancer Research
74. Spatially resolved epigenomic profiling of single cells in complex tissues
    Lu, Tian, Ang, Cheen Euong, Zhuang, Xiaowei · 2022 · Cell
75. SARS-CoV-2 Infects Human Engineered Heart Tissues and Models COVID-19 Myocarditis
    Bailey, Adam L., Dmytrenko, Oleksandr, Greenberg, Lina, Bredemeyer, Andrea L., Ma, Pan, Liu, Jing, Penna, Vinay, Winkler, Emma S., Sviben, Sanja, Brooks, Erin et al. · 2021 · JACC: Basic to Translational Science
76. PU.1 controls fibroblast polarization and tissue fibrosis
    Wohlfahrt, Thomas, Rauber, Simon, Uebe, Steffen, Luber, Markus, Soare, Alina, Ekici, Arif, Weber, Stefanie, Matei, Alexandru-Emil, Chen, Chih-Wei, Maier, Christiane et al. · 2019 · Nature
77. Histone variant H2A.J accumulates in senescent cells and promotes inflammatory gene expression
    Contrepois, Kévin, Coudereau, Clément, Benayoun, Bérénice A., Schuler, Nadine, Roux, Pierre-François, Bischof, Oliver, Courbeyrette, Régis, Carvalho, Cyril, Thuret, Jean-Yves, Ma, Zhihai et al. · 2017 · Nature Communications
78. Convergent somatic mutations in metabolism genes in chronic liver disease
    Ng, Stanley W. K., Rouhani, Foad J., Brunner, Simon F., Brzozowska, Natalia, Aitken, Sarah J., Yang, Ming, Abascal, Federico, Moore, Luiza, Nikitopoulou, Efterpi, Chappell, Lia et al. · 2021 · Nature
79. Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements
    Shah, Nakul M., Jang, H. Josh, Liang, Yonghao, Maeng, Ju Heon, Tzeng, Shin-Cheng, Wu, Angela, Basri, Noah L., Qu, Xuan, Fan, Changxu, Li, Amy et al. · 2023 · Nature Genetics
80. Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women
    Worby, Colin J., Schreiber, Henry L., Straub, Timothy J., van Dijk, Lucas R., Bronson, Ryan A., Olson, Benjamin S., Pinkner, Jerome S., Obernuefemann, Chloe L. P., Muñoz, Vanessa L., Paharik, Alexandra E. et al. · 2022 · Nature Microbiology
81. Integrator recruits protein phosphatase 2A to prevent pause release and facilitate transcription termination
    Huang, Kai-Lieh, Jee, David, Stein, Chad B., Elrod, Nathan D., Henriques, Telmo, Mascibroda, Lauren G., Baillat, David, Russell, William K., Adelman, Karen, Wagner, Eric J. · 2020 · Molecular Cell
82. Circuit and molecular architecture of a ventral hippocampal network
    Gergues, Mark M., Han, Kasey J., Choi, Hye Sun, Brown, Brandon, Clausing, Kelsey J., Turner, Victoria S., Vainchtein, Ilia D., Molofsky, Anna V., Kheirbek, Mazen A. · 2020 · Nature Neuroscience
83. A dopamine-induced gene expression signature regulates neuronal function and cocaine response
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