Two checkpoint complexes are independently recruited to sites of DNA damage in vivo
Open accessAbstract
The Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components with limited homology to replication factors PCNA and RF-C, respectively, suggesting that these factors promote checkpoint activation by “sensing” DNA damage directly. Mec1 kinase, however, phosphorylates the checkpoint protein Ddc2 in response to damage in the absence of all other known checkpoint proteins, suggesting instead that Mec1 and/or Ddc2 may act as the initial sensors of DNA damage. In this paper, we show that Ddc1 or Ddc2 fused to GFP localizes to a single subnuclear focus following an endonucleolytic break. Other forms of damage result in a greater number of Ddc1–GFP or Ddc2–GFP foci, in correlation with the number of damage sites generated, indicating that Ddc1 and Ddc2 are both recruited to sites of DNA damage. Interestingly, Ddc2 localization is severely abrogated in mec1 cells but requires no other known checkpoint genes, whereas Ddc1 localization requires Rad17, Mec3, and Rad24, but not Mec1. Therefore, Ddc1 and Ddc2 recognize DNA damage by independent mechanisms. These data support a model in which assembly of multiple checkpoint complexes at DNA damage sites stimulates checkpoint activation. Further, we show that although Ddc1 remains strongly localized following checkpoint adaptation, many nuclei contain only dim foci of Ddc2–GFP, suggesting that Ddc2 localization may be down-regulated during resumption of cell division. Lastly, visualization of checkpoint proteins localized to damage sites serves as a useful tool for analysis of DNA damage in living cells.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Two complexes are independently recruited to lesion sites: the ATR/ATRIP or Mec1/Ddc2 complex, and the 9-1-1 checkpoint clamp complex.
“Two complexes are independently recruited at the lesion sites [17]: the human ATR/ATRIP or Saccharomyces cerevisiae Mec1/Ddc2 complex, and the 9-1-1 checkpoint clamp complex, composed of Rad9-Rad1-Hus1 in human or their orthologue subunits Rad17-Mec3-Ddc1 in yeast.”
From Mind the gap: keeping UV lesions in check (2011) · cites this paper as [17]
The ATR-ATRIP complex and the 9-1-1 complex are recruited to RPA-coated single-stranded DNA independently and are bridged by TopBP1.
“The ATR-ATRIP complex and 9-1-1 complexes are recruited to RPA-ssDNA independently and are bridged by the multiple-function protein TopBP1 (Topoisomerase IIβ binding protein 1) [106–110].”
From Functional interplay between ATM/ATR-mediated DNA damage response and DNA repair pathways in oxidative stress (2014) · cites this paper as [107]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Longtine, M. S., Mckenzie, A., DeMarini, D. J., Shah, N. G., Wach, A., Brachat, A., Philippsen, P., & Pringle, J. R. (1998) · Yeast · doi:10.1002/(sici)1097-0061(199807)14:10 · Cited by 5,367 · see citing works
Loss of a yeast telomere: Arrest, recovery, and chromosome loss
Sandell, L. J. (1993) · Cell · doi:10.1016/0092-8674(93)90493-a · Cited by 787 · see citing works
Lee, S. E., Moore, J. K., Holmes, A. M., Umezu, K., Kolodner, R. D., & Haber, J. E. (1998) · Cell · doi:10.1016/s0092-8674(00)81482-8 · Cited by 775 · see citing works
Zhao, X., Muller, E. G. D., & Rothstein, R. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80277-4 · Cited by 728 · see citing works
SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast.Preprint
Strahl‐Bolsinger, S., Hecht, A., Luo, K., & Grunstein, M. R. (1997) · Genes & Development · doi:10.1101/gad.11.1.83 · Cited by 679 · see citing works
Garvik, B. M., Carson, M., & Hartwell, L. H. (1995) · Molecular and Cellular Biology · doi:10.1128/mcb.15.11.6128 · Cited by 629 · see citing works
Cdc13p: A Single-Strand Telomeric DNA-Binding Protein with a Dual Role in Yeast Telomere Maintenance
Nugent, C. I., Hughes, T., Lue, N. F., & Lundblad, V. (1996) · Science · doi:10.1126/science.274.5285.249 · Cited by 601 · see citing works
Sanchez, Y., Desany, B. A., Jones, W. J., Liu, Q., Wang, B., & Elledge, S. J. (1996) · Science · doi:10.1126/science.271.5247.357 · Cited by 585 · see citing works
Control of the DNA damage checkpoint by Chk1 and Rad53 protein kinases through distinct mechanisms
Sanchez, Y., Bachant, J., Wang, H., Hu, F., Liu, D., Tetzlaff, M., & Elledge, S. J. (1999) · Science · doi:10.1126/science.286.5442.1166 · Cited by 536 · see citing works
Functional interactions between BRCA1 and the checkpoint kinase ATR during genotoxic stress
Tibbetts, R. S., Cortez, D., Brumbaugh, K. M., Scully, R., Livingston, D., Elledge, S. J., & Abraham, R. T. (2000) · Genes & Development · doi:10.1101/gad.851000 · Cited by 512 · see citing works
Gotta, M., Laroche, T., Formenton, A., Maillet, L., Scherthan, H., & Gasser, S. M. (1996) · The Journal of Cell Biology · doi:10.1083/jcb.134.6.1349 · Cited by 465 · see citing works
CDC5 and CKII Control Adaptation to the Yeast DNA Damage Checkpoint
Toczyski, D. P., Galgoczy, D. J., & Hartwell, L. H. (1997) · Cell · doi:10.1016/s0092-8674(00)80375-x · Cited by 431 · see citing works
Self-citationYeast Checkpoint Genes in DNA Damage Processing: Implications for Repair and Arrest
Lydall, D. A., & Weinert, T. A. (1995) · Science · doi:10.1126/science.270.5241.1488 · Cited by 416 · see citing works
Rad53 FHA Domain Associated with Phosphorylated Rad9 in the DNA Damage Checkpoint
Sun, Z., Hsiao, J., Fay, D. S., & Stern, D. F. (1998) · Science · doi:10.1126/science.281.5374.272 · Cited by 398 · see citing works
Sun, Z., Fay, D. S., Marini, F., Foiani, M., & Stern, D. F. (1996) · Genes & Development · doi:10.1101/gad.10.4.395 · Cited by 300 · see citing works
Pellicioli, A., Lee, S. E., Lucca, C., Foiani, M., & Haber, J. E. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00177-0 · Cited by 290 · see citing works
Sensing and responding to DNA damage
Lowndes, N. F., & Murguía, J. R. (2000) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(99)00050-7 · Cited by 269 · see citing works
Venclovas, Č., & Thelen, M. P. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.13.2481 · Cited by 268 · see citing works
Cell cycle arrest of cdc mutants and specificity of the RAD9 checkpoint.
Weinert, T. A., & Hartwell, L. H. (1993) · Genetics · doi:10.1093/genetics/134.1.63 · Cited by 264 · see citing works
Saccharomyces cerevisiae cell cycle mutant cdc9 is defective in DNA ligase
Johnston, L. H., & Nasmyth, K. (1978) · Nature · doi:10.1038/274891a0 · Cited by 259 · see citing works
Paciotti, V., Clerici, M., Lucchini, G., & Longhese, M. P. (2000) · Genes & Development · doi:10.1101/gad.14.16.2046 · Cited by 246 · see citing works
Caspari, T., Dahlén, M., Kanter-Smoler, G., Lindsay, H. D., Hofmann, K., Papadimitriou, K., Sunnerhagen, P., & Carr, A. M. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.4.1254-1262.2000 · Cited by 231 · see citing works
MEC1-Dependent Phosphorylation of Rad9p in Response to DNA Damage
Emili, A. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80128-8 · Cited by 218 · see citing works
A novel Rad24 checkpoint protein complex closely related to replication factor C
Green, C., Erdjument‐Bromage, H., Tempst, P., & Lowndes, N. F. (2000) · Current Biology · doi:10.1016/s0960-9822(99)00263-8 · Cited by 208 · see citing works
Griffiths, D. J. F., Barbet, N., McCready, S. J., Lehmann, A. R., & Carr, A. M. (1995) · The EMBO Journal · doi:10.1002/j.1460-2075.1995.tb00269.x · Cited by 204 · see citing works
A Rad3–Rad26 complex responds to DNA damage independently of other checkpoint proteins
Edwards, R. J., Bentley, N. J., & Carr, A. M. (1999) · Nature Cell Biology · doi:10.1038/15623 · Cited by 197 · see citing works
DNA damage checkpoints update: getting molecular
Weinert, T. A. (1998) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(98)80140-8 · Cited by 192 · see citing works
Purification and DNA binding properties of the ataxia-telangiectasia gene product ATM
Smith, G. C. M., Cary, R. B., Lakin, N. D., Hann, B. C., Teo, S., Chen, D. J., & Jackson, S. P. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.20.11134 · Cited by 173 · see citing works
Clamping down on clamps and clamp loaders
Mossi, R., & Hübscher, U. (1998) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.1998.254209.x · Cited by 164 · see citing works
Human homologue of S. pombe Rad9 interacts with BCL-2/BCL-xL and promotes apoptosis
Komatsu, K., Miyashita, T., Hang, H., Hopkins, K. M., Zheng, W., Cuddeback, S. M., Yamada, M., Lieberman, H. B., & Wang, H. (1999) · Nature Cell Biology · doi:10.1038/71316 · Cited by 151 · see citing works
Rouse, J. W., & Jackson, S. P. (2000) · The EMBO Journal · doi:10.1093/emboj/19.21.5801 · Cited by 139 · see citing works
Paciotti, V., Lucchini, G., Plevani, P., & Longhese, M. P. (1998) · The EMBO Journal · doi:10.1093/emboj/17.14.4199 · Cited by 132 · see citing works
Sir Proteins, Rif Proteins, and Cdc13p Bind Saccharomyces Telomeres In Vivo
Bourns, B. D., Alexander, M. K., Smith, A. M., & Zakian, V. A. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.9.5600 · Cited by 132 · see citing works
Wakayama, T., Kondo, T., Ando, S., Matsumoto, K., & Sugimoto, K. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.3.755-764.2001 · Cited by 117 · see citing works
Burtelow, M. A., Kaufmann, S. H., & Karnitz, L. M. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m001244200 · Cited by 114 · see citing works
Checkpoint Adaptation Precedes Spontaneous and Damage-Induced Genomic Instability in Yeast
Galgoczy, D. J., & Toczyski, D. P. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.5.1710-1718.2001 · Cited by 109 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Molecular Mechanisms of Mammalian DNA Repair and the DNA Damage Checkpoints
Sancar, A., Lindsey-Boltz, L. A., Ünsal-Kaçmaz, K., & Linn, S. (2004) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.73.011303.073723 · Cited by 3,317 · see citing works
Sensing DNA Damage Through ATRIP Recognition of RPA-ssDNA Complexes
Zou, L., & Elledge, S. J. (2003) · Science · doi:10.1126/science.1083430 · Cited by 2,693 · see citing works
ATR: an essential regulator of genome integrity
Cimprich, K. A., & Cortez, D. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2450 · Cited by 1,798 · see citing works
Choreography of the DNA Damage Response
Lisby, M., Barlow, J. H., Burgess, R. C., & Rothstein, R. (2004) · Cell · doi:10.1016/j.cell.2004.08.015 · Cited by 891 · see citing works
Byun, T. S., Pacek, M., Yee, M.-C., Walter, J. C., & Cimprich, K. A. (2005) · Genes & Development · doi:10.1101/gad.1301205 · Cited by 767 · see citing works
Distinct spatiotemporal dynamics of mammalian checkpoint regulators induced by DNA damage.
Lukas, C., Falck, J., Bartkova, J., Bartek, J., & Lukas, J. (2003) · Nature Cell Biology · doi:10.1038/ncb945 · Cited by 474 · see citing works
Replication protein A-mediated recruitment and activation of Rad17 complexes
Zou, L., Liu, D., & Elledge, S. J. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2336100100 · Cited by 431 · see citing works
Ellison, V., & Stillman, B. (2003) · PLoS Biology · doi:10.1371/journal.pbio.0000033 · Cited by 363 · see citing works
Dial 9–1–1 for DNA damage: the Rad9–Hus1–Rad1 (9–1–1) clamp complex
Parrilla-Castellar, E. R., Arlander, S. J. H., & Karnitz, L. (2004) · DNA Repair · doi:10.1016/j.dnarep.2004.03.032 · Cited by 342 · see citing works
Bermudez, V. P., Lindsey-Boltz, L. A., Cesare, A. J., Maniwa, Y., Griffith, J. D., Hurwitz, J., & Sancar, A. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0437927100 · Cited by 324 · see citing works
ATR signalling: more than meeting at the fork
Nam, E. A., & Cortez, D. (2011) · Biochemical Journal · doi:10.1042/bj20102162 · Cited by 316 · see citing works
Yan, S., Sorrell, M., & Berman, Z. (2014) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1666-4 · Cited by 247 · see citing works
The checkpoint clamp activates Mec1 kinase during initiation of the DNA damage checkpoint
Majka, J., Niedziela-Majka, A., & Burgers, P. M. J. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.11.027 · Cited by 186 · see citing works
Short Telomeres Induce a DNA Damage Response in<i>Saccharomyces cerevisiae</i>
IJpma, A. S., & Greider, C. W. (2003) · Molecular Biology of the Cell · doi:10.1091/mbc.02-04-0057 · Cited by 178 · see citing works
Preferential binding of ATR protein to UV-damaged DNA
Ünsal-Kaçmaz, K., Makhov, A. M., Griffith, J. D., & Sancar, A. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.102167799 · Cited by 176 · see citing works
Bonilla, C. Y., Melo, J. A., & Toczyski, D. P. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.03.023 · Cited by 161 · see citing works
Self-citationATR/Mec1: coordinating fork stability and repair
Friedel, A. M., Pike, B. L., & Gasser, S. M. (2009) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2009.01.017 · Cited by 157 · see citing works
Enomoto, S., Glowczewski, L., & Berman, J. (2002) · Molecular Biology of the Cell · doi:10.1091/mbc.02-02-0012 · Cited by 133 · see citing works
Who's on first in the cellular response to DNA damage?
Cline, S. D., & Hanawalt, P. C. (2003) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1101 · Cited by 129 · see citing works
Eukaryotic DNA damage checkpoint activation in response to double-strand breaks
Finn, K., Lowndes, N. F., & Grenon, M. (2012) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-011-0875-3 · Cited by 127 · see citing works
Dpb11 activates the Mec1-Ddc2 complex
Mordes, D. A., Nam, E. A., & Cortez, D. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0806621105 · Cited by 121 · see citing works
Recruitment of the Cell Cycle Checkpoint Kinase ATR to Chromatin during S-phase
Dart, D. A., Adams, K. E., Akerman, I., & Lakin, N. D. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m314212200 · Cited by 124 · see citing works
Toueille, M. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh652 · Cited by 122 · see citing works
Physical and functional interactions between nucleotide excision repair and DNA damage checkpoint
Giannattasio, M., Lazzaro, F., Longhese, M. P., Plevani, P., & Muzi‐Falconi, M. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600051 · Cited by 113 · see citing works
TopBP1 and DNA polymerase-α directly recruit the 9-1-1 complex to stalled DNA replication forks
Yan, S., & Michael, W. M. (2009) · Journal of Cell Biology · doi:10.1083/jcb.200810185 · Cited by 107 · see citing works
Requirement of the Mre11 complex and exonuclease 1 for activation of the Mec1 signaling pathway
Nakada, D., Hirano, Y., & Sugimoto, K. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.22.10016-10025.2004 · Cited by 113 · see citing works
Navadgi-Patil, V. M., & Burgers, P. M. (2009) · DNA Repair · doi:10.1016/j.dnarep.2009.03.011 · Cited by 93 · see citing works
Bomgarden, R. D., Lupardus, P. J., Soni, D. V., Yee, M., Ford, J. M., & Cimprich, K. A. (2006) · The EMBO Journal · doi:10.1038/sj.emboj.7601123 · Cited by 87 · see citing works
Chang, D.-Y., & Lu, A.-L. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m406800200 · Cited by 85 · see citing works
Perspectives on the DNA damage and replication checkpoint responses in Saccharomyces cerevisiae
Putnam, C. D., Jaehnig, E. J., & Kolodner, R. D. (2009) · DNA Repair · doi:10.1016/j.dnarep.2009.04.021 · Cited by 83 · see citing works
Hiding at the ends of yeast chromosomes: Telomeres, nucleases and checkpoint pathways
Lydall, D. (2003) · Journal of Cell Science · doi:10.1242/jcs.00765 · Cited by 72 · see citing works
Recruitment of DNA damage checkpoint proteins to damage in transcribed and nontranscribed sequences
Jiang, G., & Sancar, A. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.26.1.39-49.2006 · Cited by 70 · see citing works
A domain of Rad9 specifically required for activation of Chk1 in budding yeast
Blankley, R. T., & Lydall, D. (2004) · Journal of Cell Science · doi:10.1242/jcs.00907 · Cited by 69 · see citing works
Cut5 Is Required for the Binding of Atr and DNA Polymerase α to Genotoxin-damaged Chromatin
Parrilla-Castellar, E. R., & Karnitz, L. M. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.c300418200 · Cited by 65 · see citing works
Guan, X., Madabushi, A., Chang, D.-Y., Fitzgerald, M. E., Shi, G., Drohat, A. C., & Lu, A.-L. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm678 · Cited by 65 · see citing works
Mind the gap: keeping UV lesions in check
Novarina, D., Amara, F., Lazzaro, F., Plevani, P., & Muzi-Falconi, M. (2011) · DNA Repair · doi:10.1016/j.dnarep.2011.04.030 · Cited by 43 · see citing works
“Two complexes are independently recruited t the lesion sites [17]: the human ATR/ATRIP or Saccharomyces”
BackgroundZhang, H., Taylor, J., & Siede, W. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m300061200 · Cited by 24 · see citing works
- Authors
- Melo, J. A., Cohen, J., & Toczyski, D. P.
- Affiliations
- University of California, San Francisco (US)
- Venue
- Genes & Development
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2001-11-01
- Volume
- 15
- Issue
- 21
- Pages
- 2809-2821
- ISSN
- 0890-9369 (ISSN-L)
- 1549-5477
- PMC
- PMC312815
- OpenAlex
- W2107130407
- Cited by
- 384
- References
- 36
- Citations by year
- 2026: 3 · 2025: 3 · 2024: 9 · 2023: 5 · 2022: 3 · 2021: 2 · 2020: 3 · 2019: 6 · 2018: 5 · 2017: 7 · 2016: 7 · 2015: 11 · 2014: 11 · 2013: 11 · 2012: 6
- Type
- posted content
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Genes & Development (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- University of California, San Francisco
- National Institute of General Medical Sciences (GM59691-01, R01GM059691)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- DNA damage checkpoint, Rad24, Mec1 kinase, checkpoint adaptation, cell cycle re-entry, Saccharomyces cerevisiae
- MeSH terms
- Chromatin, DNA Damage, DNA-Binding Proteins, Fungal Proteins, Genes, Fungal, Luminescent Proteins, Microscopy, Fluorescence, Mitosis, Models, Biological, Nuclear Proteins, Phosphoproteins, Phosphorylation, Precipitin Tests, Protein Binding, Recombinant Fusion Proteins, Temperature, Time Factors, Down-Regulation, Protein Serine-Threonine Kinases, Cell Cycle Proteins, Saccharomyces cerevisiae Proteins, Intracellular Signaling Peptides and Proteins, Adaptor Proteins, Signal Transducing, Green Fluorescent Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review