The Human Genome Browser at UCSC

Cited by (358)

Items 101–200 of 358

1. Brain cell type–specific enhancer–promoter interactome maps and disease <b>-</b> risk association
   Nott, Alexi, Holtman, Inge R., Coufal, Nicole G., Schlachetzki, Johannes C. M., Yu, Miao, Hu, Rong, Han, Claudia Z., Pena, Monique, Xiao, Jiayang, Wu, Yin et al. · 2019 · Science
2. piRNAs Can Trigger a Multigenerational Epigenetic Memory in the Germline of C. elegans
   Ashe, Alyson, Sapetschnig, Alexandra, Weick, Eva-Maria, Mitchell, Jacinth, Bagijn, Marloes P., Cording, Amy C., Doebley, Anna-Lisa, Goldstein, Leonard D., Lehrbach, Nicolas J., Le Pen, Jérémie et al. · 2012 · Cell
3. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element
   Mansour, Marc R., Abraham, Brian J., Anders, Lars, Berezovskaya, Alla, Gutierrez, Alejandro, Durbin, Adam D., Etchin, Julia, Lawton, Lee, Sallan, Stephen E., Silverman, Lewis B. et al. · 2014 · Science
4. Large-scale whole-genome sequencing of the Icelandic population
   Gudbjartsson, Daniel F, Helgason, Hannes, Gudjonsson, Sigurjon A, Zink, Florian, Oddson, Asmundur, Gylfason, Arnaldur, Besenbacher, Soren, Magnusson, Gisli, Halldorsson, Bjarni V, Hjartarson, Eirikur et al. · 2015 · Nature Genetics
5. A common variant associated with prostate cancer in European and African populations
   Amundadottir, Laufey T, Sulem, Patrick, Gudmundsson, Julius, Helgason, Agnar, Baker, Adam, Agnarsson, Bjarni A, Sigurdsson, Asgeir, Benediktsdottir, Kristrun R, Cazier, Jean-Baptiste, Sainz, Jesus et al. · 2006 · Nature Genetics
6. KRAS and YAP1 Converge to Regulate EMT and Tumor Survival
   Shao, Diane D., Xue, Wen, Krall, Elsa B., Bhutkar, Arjun, Piccioni, Federica, Wang, Xiaoxing, Schinzel, Anna C., Sood, Sabina, Rosenbluh, Joseph, Kim, Jong W. et al. · 2014 · Cell
7. Small-molecule–induced DNA damage identifies alternative DNA structures in human genes
   Rodriguez, Raphaël, Miller, Kyle M, Forment, Josep V, Bradshaw, Charles R, Nikan, Mehran, Britton, Sébastien, Oelschlaegel, Tobias, Xhemalce, Blerta, Balasubramanian, Shankar, Jackson, Stephen P · 2012 · Nature Chemical Biology
8. Systematic mapping of functional enhancer–promoter connections with CRISPR interference
   Fulco, Charles P., Munschauer, Mathias, Anyoha, Rockwell, Munson, Glen, Grossman, Sharon R., Perez, Elizabeth M., Kane, Michael, Cleary, Brian, Lander, Eric S., Engreitz, Jesse M. · 2016 · Science
9. The UCSC Genome Browser database: 2014 update
   Karolchik, Donna, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Cline, Melissa S., Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian et al. · 2014 · Nucleic Acids Research
10. An initial map of insertion and deletion (INDEL) variation in the human genome
    Mills, Ryan E., Luttig, Christopher T., Larkins, Christine E., Beauchamp, Adam, Tsui, Circe, Pittard, W. Stephen, Devine, Scott E. · 2006 · Genome Research
11. Correlated gene expression supports synchronous activity in brain networks
    Richiardi, Jonas, Altmann, Andre, Milazzo, Anna-Clare, Chang, Catie, Chakravarty, M. Mallar, Banaschewski, Tobias, Barker, Gareth J., Bokde, Arun L.W., Bromberg, Uli, Büchel, Christian et al. · 2015 · Science
12. Haplotype-resolved diverse human genomes and integrated analysis of structural variation
    Ebert, Peter, Audano, Peter A., Zhu, Qihui, Rodriguez-Martin, Bernardo, Porubsky, David, Bonder, Marc Jan, Sulovari, Arvis, Ebler, Jana, Zhou, Weichen, Serra Mari, Rebecca et al. · 2021 · Science
13. Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs
    Kapusta, Aurélie, Kronenberg, Zev, Lynch, Vincent J., Zhuo, Xiaoyu, Ramsay, LeeAnn, Bourque, Guillaume, Yandell, Mark, Feschotte, Cédric · 2013 · PLoS Genetics
14. Mitochondrial double-stranded RNA triggers antiviral signalling in humans
    Dhir, Ashish, Dhir, Somdutta, Borowski, Lukasz S., Jimenez, Laura, Teitell, Michael, Rötig, Agnès, Crow, Yanick J., Rice, Gillian I., Duffy, Darragh, Tamby, Christelle et al. · 2018 · Nature
15. LINE-1 Retrotransposition Activity in Human Genomes
    Beck, Christine R., Collier, Pamela, Macfarlane, Catriona, Malig, Maika, Kidd, Jeffrey M., Eichler, Evan E., Badge, Richard M., Moran, John V. · 2010 · Cell
16. Systematic analysis of telomere length and somatic alterations in 31 cancer types
    Barthel, Floris P, Wei, Wei, Tang, Ming, Martinez-Ledesma, Emmanuel, Hu, Xin, Amin, Samirkumar B, Akdemir, Kadir C, Seth, Sahil, Song, Xingzhi, Wang, Qianghu et al. · 2017 · Nature Genetics
17. Identification and characterization of circular RNAs As a new class of putative biomarkers in human blood
    Memczak, Sebastian, Papavasileiou, Panagiotis, Peters, Oliver, Rajewsky, Nikolaus · 2015 · PLoS ONE
18. Complete genomic and epigenetic maps of human centromeres
    Altemose, Nicolas, Logsdon, Glennis A., Bzikadze, Andrey V., Sidhwani, Pragya, Langley, Sasha A., Caldas, Gina V., Hoyt, Savannah J., Uralsky, Lev, Ryabov, Fedor D., Shew, Colin J. et al. · 2022 · Science
19. Target analysis by integration of transcriptome and ChIP-seq data with BETA
    Wang, Su, Sun, Hanfei, Ma, Jian, Zang, Chongzhi, Wang, Chenfei, Wang, Juan, Tang, Qianzi, Meyer, Clifford A, Zhang, Yong, Liu, X Shirley · 2013 · Nature Protocols
20. Genomic evidence for the Pleistocene and recent population history of Native Americans
    Raghavan, Maanasa, Steinrücken, Matthias, Harris, Kelley, Schiffels, Stephan, Rasmussen, Simon, DeGiorgio, Michael, Albrechtsen, Anders, Valdiosera, Cristina, Ávila-Arcos, María C., Malaspinas, Anna-Sapfo et al. · 2015 · Science
21. TDP-43 represses cryptic exon inclusion in the FTD-ALS gene UNC13A
    Ma, X. Rosa, Prudencio, Mercedes, Koike, Yuka, Vatsavayai, Sarat C., Kim, Garam, Harbinski, Fred, Briner, Adam, Rodriguez, Caitlin M., Guo, Caiwei, Akiyama, Tetsuya et al. · 2022 · Nature
22. Natural mutagenesis of human genomes by endogenous retrotransposons
    Iskow, Rebecca C., McCabe, Michael T., Mills, Ryan E., Torene, Spencer, Pittard, W. Stephen, Neuwald, Andrew F., Van Meir, Erwin G., Vertino, Paula M., Devine, Scott E. · 2010 · Cell
23. Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
    Evrony, Gilad D., Cai, Xuyu, Lee, Eunjung, Hills, L. Benjamin, Elhosary, Princess C., Lehmann, Hillel S., Parker, J.J., Atabay, Kutay D., Gilmore, Edward C., Poduri, Annapurna et al. · 2012 · Cell
24. Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids
    Ouchi, Rie, Togo, Shodai, Kimura, Masaki, Shinozawa, Tadahiro, Koido, Masaru, Koike, Hiroyuki, Thompson, Wendy, Karns, Rebekah A., Mayhew, Christopher N., McGrath, Patrick S. et al. · 2019 · Cell Metabolism
25. An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
    Jacobs, Frank M. J., Greenberg, David, Nguyen, Ngan, Haeussler, Maximilian, Ewing, Adam D., Katzman, Sol, Paten, Benedict, Salama, Sofie R., Haussler, David · 2014 · Nature
26. Genomic and biochemical insights into the specificity of ETS transcription factors
    Hollenhorst, Peter C., McIntosh, Lawrence P., Graves, Barbara J. · 2011 · Annual Review of Biochemistry
27. Tau promotes neurodegeneration through global chromatin relaxation
    Frost, Bess, Hemberg, Martin, Lewis, Jada, Feany, Mel B · 2014 · Nature Neuroscience
28. Competition between DNA methylation and transcription factors determines binding of NRF1
    Domcke, Silvia, Bardet, Anaïs Flore, Adrian Ginno, Paul, Hartl, Dominik, Burger, Lukas, Schübeler, Dirk · 2015 · Nature
29. Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells
    DeWitt, Mark A., Magis, Wendy, Bray, Nicolas L., Wang, Tianjiao, Berman, Jennifer R., Urbinati, Fabrizia, Heo, Seok-Jin, Mitros, Therese, Muñoz, Denise P., Boffelli, Dario et al. · 2016 · Science Translational Medicine
30. The Human Pangenome Project: a global resource to map genomic diversity
    Wang, Ting, Antonacci-Fulton, Lucinda, Howe, Kerstin, Lawson, Heather A., Lucas, Julian K., Phillippy, Adam M., Popejoy, Alice B., Asri, Mobin, Carson, Caryn, Chaisson, Mark J. P. et al. · 2022 · Nature
31. The impact of structural variation on human gene expression
    GTEx Consortium, Chiang, Colby, Scott, Alexandra J, Davis, Joe R, Tsang, Emily K, Li, Xin, Kim, Yungil, Hadzic, Tarik, Damani, Farhan N, Ganel, Liron et al. · 2017 · Nature Genetics
32. An integrated approach to uncover drivers of cancer
    Akavia, Uri David, Litvin, Oren, Kim, Jessica, Sanchez-Garcia, Felix, Kotliar, Dylan, Causton, Helen C., Pochanard, Panisa, Mozes, Eyal, Garraway, Levi A., Pe'er, Dana · 2010 · Cell
33. Abundant contribution of short tandem repeats to gene expression variation in humans
    Gymrek, Melissa, Willems, Thomas, Guilmatre, Audrey, Zeng, Haoyang, Markus, Barak, Georgiev, Stoyan, Daly, Mark J, Price, Alkes L, Pritchard, Jonathan K, Sharp, Andrew J et al. · 2016 · Nature Genetics
34. Single-cell analysis of mixed-lineage states leading to a binary cell fate choice
    Olsson, Andre, Venkatasubramanian, Meenakshi, Chaudhri, Viren K., Aronow, Bruce J., Salomonis, Nathan, Singh, Harinder, Grimes, H. Leighton · 2016 · Nature
35. Using Whole-Exome Sequencing to Identify Inherited Causes of Autism
    Yu, Timothy W., Chahrour, Maria H., Coulter, Michael E., Jiralerspong, Sarn, Okamura-Ikeda, Kazuko, Ataman, Bulent, Schmitz-Abe, Klaus, Harmin, David A., Adli, Mazhar, Malik, Athar N. et al. · 2013 · Neuron
36. Widespread Genomic Signatures of Natural Selection in Hominid Evolution
    McVicker, Graham, Gordon, David, Davis, Colleen, Green, Phil · 2009 · PLoS Genetics
37. Wnt signaling directs a metabolic program of glycolysis and angiogenesis in colon cancer
    Pate, Kira T, Stringari, Chiara, Sprowl‐Tanio, Stephanie, Wang, Kehui, TeSlaa, Tara, Hoverter, Nate P, McQuade, Miriam M, Garner, Chad, Digman, Michelle A, Teitell, Michael A et al. · 2014 · The EMBO Journal
38. Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis
    Seidman, Jason S., Troutman, Ty D., Sakai, Mashito, Gola, Anita, Spann, Nathanael J., Bennett, Hunter, Bruni, Cassi M., Ouyang, Zhengyu, Li, Rick Z., Sun, Xiaoli et al. · 2020 · Immunity
39. Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
    Byrne, Ashley, Beaudin, Anna E., Olsen, Hugh E., Jain, Miten, Cole, Charles, Palmer, Theron, DuBois, Rebecca M., Forsberg, E. Camilla, Akeson, Mark, Vollmers, Christopher · 2017 · Nature Communications
40. Drug repurposing for cancer therapy
    Xia, Ying, Sun, Ming, Huang, Hai, Jin, Wei-Lin · 2024 · Signal Transduction and Targeted Therapy
41. IRE1α–XBP1 controls T cell function in ovarian cancer by regulating mitochondrial activity
    Song, Minkyung, Sandoval, Tito A., Chae, Chang-Suk, Chopra, Sahil, Tan, Chen, Rutkowski, Melanie R., Raundhal, Mahesh, Chaurio, Ricardo A., Payne, Kyle K., Konrad, Csaba et al. · 2018 · Nature
42. YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
    Stein, Claudia, Bardet, Anaïs Flore, Roma, Guglielmo, Bergling, Sebastian, Clay, Ieuan, Ruchti, Alexandra, Agarinis, Claudia, Schmelzle, Tobias, Bouwmeester, Tewis, Schübeler, Dirk et al. · 2015 · PLOS Genetics
43. Vector design influences hepatic genotoxicity after adeno-associated virus gene therapy
    Chandler, Randy J., LaFave, Matthew C., Varshney, Gaurav K., Trivedi, Niraj S., Carrillo-Carrasco, Nuria, Senac, Julien S., Wu, Weiwei, Hoffmann, Victoria, Elkahloun, Abdel G., Burgess, Shawn M. et al. · 2015 · Journal of Clinical Investigation
44. Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder
    Elia, Josephine, Glessner, Joseph T, Wang, Kai, Takahashi, Nagahide, Shtir, Corina J, Hadley, Dexter, Sleiman, Patrick M A, Zhang, Haitao, Kim, Cecilia E, Robison, Reid et al. · 2012 · Nature Genetics
45. Genome-wide association study of obsessive-compulsive disorder
    Stewart, S E, Yu, D, Scharf, J M, Neale, B M, Fagerness, J A, Mathews, C A, Arnold, P D, Evans, P D, Gamazon, E R, Osiecki, L et al. · 2013 · Molecular Psychiatry
46. Integrated multimodal cell atlas of Alzheimer’s disease
    Gabitto, Mariano I., Travaglini, Kyle J., Rachleff, Victoria M., Kaplan, Eitan S., Long, Brian, Ariza, Jeanelle, Ding, Yi, Mahoney, Joseph T., Dee, Nick, Goldy, Jeff et al. · 2024 · Nature Neuroscience
47. Genome Organization Drives Chromosome Fragility
    Canela, Andres, Maman, Yaakov, Jung, Seolkyoung, Wong, Nancy, Callen, Elsa, Day, Amanda, Kieffer-Kwon, Kyong-Rim, Pekowska, Aleksandra, Zhang, Hongliang, Rao, Suhas S.P. et al. · 2017 · Cell
48. Genetic dissection of the α-globin super-enhancer in vivo
    Hay, Deborah, Hughes, Jim R, Babbs, Christian, Davies, James O J, Graham, Bryony J, Hanssen, Lars L P, Kassouf, Mira T, Oudelaar, A Marieke, Sharpe, Jacqueline A, Suciu, Maria C et al. · 2016 · Nature Genetics
49. A Single SNP in an Evolutionary Conserved Region within Intron 86 of the HERC2 Gene Determines Human Blue-Brown Eye Color
    Sturm, Richard A., Duffy, David L., Zhao, Zhen Zhen, Leite, Fabio P.N., Stark, Mitchell S., Hayward, Nicholas K., Martin, Nicholas G., Montgomery, Grant W. · 2008 · The American Journal of Human Genetics
50. An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer’s disease
    Nativio, Raffaella, Lan, Yemin, Donahue, Greg, Sidoli, Simone, Berson, Amit, Srinivasan, Ananth R., Shcherbakova, Oksana, Amlie-Wolf, Alexandre, Nie, Ji, Cui, Xiaolong et al. · 2020 · Nature Genetics
51. The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment
    Cotney, Justin, Muhle, Rebecca A., Sanders, Stephan J., Liu, Li, Willsey, A. Jeremy, Niu, Wei, Liu, Wenzhong, Klei, Lambertus, Lei, Jing, Yin, Jun et al. · 2015 · Nature Communications
52. Telomerase directly regulates NF-κB-dependent transcription
    Ghosh, Arkasubhra, Saginc, Gaye, Leow, Shi Chi, Khattar, Ekta, Shin, Eun Myong, Yan, Ting Dong, Wong, Marc, Zhang, Zhizhuo, Li, Guoliang, Sung, Wing-Kin et al. · 2012 · Nature Cell Biology
53. Identifying Recent Adaptations in Large-Scale Genomic Data
    Grossman, Sharon R., Andersen, Kristian G., Shlyakhter, Ilya, Tabrizi, Shervin, Winnicki, Sarah, Yen, Angela, Park, Daniel J., Griesemer, Dustin, Karlsson, Elinor K., Wong, Sunny H. et al. · 2013 · Cell
54. An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder
    Werling, Donna M., Brand, Harrison, An, Joon-Yong, Stone, Matthew R., Zhu, Lingxue, Glessner, Joseph T., Collins, Ryan L., Dong, Shan, Layer, Ryan M., Markenscoff-Papadimitriou, Eirene et al. · 2018 · Nature Genetics
55. RNA targets of wild-type and mutant FET family proteins
    Hoell, Jessica I, Larsson, Erik, Runge, Simon, Nusbaum, Jeffrey D, Duggimpudi, Sujitha, Farazi, Thalia A, Hafner, Markus, Borkhardt, Arndt, Sander, Chris, Tuschl, Thomas · 2011 · Nature Structural &amp; Molecular Biology
56. The mutational footprints of cancer therapies
    Pich, Oriol, Muiños, Ferran, Lolkema, Martijn Paul, Steeghs, Neeltje, Gonzalez-Perez, Abel, Lopez-Bigas, Nuria · 2019 · Nature Genetics
57. Modeling of TREX1-dependent autoimmune disease using human stem cells highlights L1 accumulation as a source of neuroinflammation
    Thomas, Charles A., Tejwani, Leon, Trujillo, Cleber A., Negraes, Priscilla D., Herai, Roberto H., Mesci, Pinar, Macia, Angela, Crow, Yanick J., Muotri, Alysson R. · 2017 · Cell Stem Cell
58. Endogenous retroviral LTRs as promoters for human genes: A critical assessment
    Cohen, Carla J., Lock, Wynne M., Mager, Dixie L. · 2009 · Gene
59. Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
    Ameur, Adam, Zaghlool, Ammar, Halvardson, Jonatan, Wetterbom, Anna, Gyllensten, Ulf, Cavelier, Lucia, Feuk, Lars · 2011 · Nature Structural &amp; Molecular Biology
60. Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History
    Liu, Siyang, Huang, Shujia, Chen, Fang, Zhao, Lijian, Yuan, Yuying, Francis, Stephen Starko, Fang, Lin, Li, Zilong, Lin, Long, Liu, Rong et al. · 2018 · Cell
61. Germline rates of de novo meiotic deletions and duplications causing several genomic disorders
    Turner, Daniel J, Miretti, Marcos, Rajan, Diana, Fiegler, Heike, Carter, Nigel P, Blayney, Martyn L, Beck, Stephan, Hurles, Matthew E · 2008 · Nature Genetics
62. Genomic regions exhibiting positive selection identified from dense genotype data
    Carlson, Christopher S., Thomas, Daryl J., Eberle, Michael A., Swanson, Johanna E., Livingston, Robert J., Rieder, Mark J., Nickerson, Deborah A. · 2005 · Genome Research
63. miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment
    Lopez, Juan Pablo, Lim, Raymond, Cruceanu, Cristiana, Crapper, Liam, Fasano, Caroline, Labonte, Benoit, Maussion, Gilles, Yang, Jennie P, Yerko, Volodymyr, Vigneault, Erika et al. · 2014 · Nature Medicine
64. Histone Acetylome-wide Association Study of Autism Spectrum Disorder
    Sun, Wenjie, Poschmann, Jeremie, Cruz-Herrera del Rosario, Ricardo, Parikshak, Neelroop N., Hajan, Hajira Shreen, Kumar, Vibhor, Ramasamy, Ramalakshmi, Belgard, T. Grant, Elanggovan, Bavani, Wong, Chloe Chung Yi et al. · 2016 · Cell
65. MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development
    Boutz, Paul L., Chawla, Geetanjali, Stoilov, Peter, Black, Douglas L. · 2007 · Genes &amp; Development
66. Heme controls ferroportin1 (FPN1) transcription involving Bach1, Nrf2 and a MARE/ARE sequence motif at position -7007 of the FPN1 promoter
    Marro, S., Chiabrando, D., Messana, E., Stolte, J., Turco, E., Tolosano, E., Muckenthaler, M. U. · 2010 · Haematologica
67. QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments
    Hartley, Stephen W., Mullikin, James C. · 2015 · BMC Bioinformatics
68. Precursors for Nonlymphoid-Tissue Treg Cells Reside in Secondary Lymphoid Organs and Are Programmed by the Transcription Factor BATF
    Delacher, Michael, Imbusch, Charles D., Hotz-Wagenblatt, Agnes, Mallm, Jan-Philipp, Bauer, Katharina, Simon, Malte, Riegel, Dania, Rendeiro, André F., Bittner, Sebastian, Sanderink, Lieke et al. · 2020 · Immunity
69. DNA Breaks and End Resection Measured Genome-wide by End Sequencing
    Canela, Andres, Sridharan, Sriram, Sciascia, Nicholas, Tubbs, Anthony, Meltzer, Paul, Sleckman, Barry P., Nussenzweig, André · 2016 · Molecular Cell
70. Mutant U2AF1 Expression Alters Hematopoiesis and Pre-mRNA Splicing In Vivo
    Shirai, Cara Lunn, Ley, James N., White, Brian S., Kim, Sanghyun, Tibbitts, Justin, Shao, Jin, Ndonwi, Matthew, Wadugu, Brian, Duncavage, Eric J., Okeyo-Owuor, Theresa et al. · 2015 · Cancer Cell
71. DeepSTARR predicts enhancer activity from DNA sequence and enables the <i>de novo</i> design of enhancers
    de Almeida, Bernardo P., Reiter, Franziska, Pagani, Michaela, Stark, Alexander · 2021
72. DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers
    de Almeida, Bernardo P., Reiter, Franziska, Pagani, Michaela, Stark, Alexander · 2022 · Nature Genetics
73. A heterochromatin-dependent transcription machinery drives piRNA expression
    Andersen, Peter Refsing, Tirian, Laszlo, Vunjak, Milica, Brennecke, Julius · 2017 · Nature
74. Peroxisome Proliferator-Activated Receptor γ and C/EBPα Synergistically Activate Key Metabolic Adipocyte Genes by Assisted Loading
    Madsen, Maria Stahl, Siersbæk, Rasmus, Boergesen, Michael, Nielsen, Ronni, Mandrup, Susanne · 2014 · Molecular and Cellular Biology
75. Multiplexed analysis of chromosome conformation at vastly improved sensitivity
    Davies, James O J, Telenius, Jelena M, McGowan, Simon J, Roberts, Nigel A, Taylor, Stephen, Higgs, Douglas R, Hughes, Jim R · 2016 · Nature Methods
76. Synergy between Variant PRC1 Complexes Defines Polycomb-Mediated Gene Repression
    Fursova, Nadezda A., Blackledge, Neil P., Nakayama, Manabu, Ito, Shinsuke, Koseki, Yoko, Farcas, Anca M., King, Hamish W., Koseki, Haruhiko, Klose, Robert J. · 2019 · Molecular Cell
77. Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing
    Sharon, Eilon, Chen, Shi-An A., Khosla, Neil M., Smith, Justin D., Pritchard, Jonathan K., Fraser, Hunter B. · 2018 · Cell
78. PTBP1-Mediated Alternative Splicing Regulates the Inflammatory Secretome and the Pro-tumorigenic Effects of Senescent Cells
    Georgilis, Athena, Klotz, Sabrina, Hanley, Christopher J., Herranz, Nicolas, Weirich, Benedikt, Morancho, Beatriz, Leote, Ana Carolina, D'Artista, Luana, Gallage, Suchira, Seehawer, Marco et al. · 2018 · Cancer Cell
79. Gene expression variability across cells and species shapes innate immunity
    Hagai, Tzachi, Chen, Xi, Miragaia, Ricardo J., Rostom, Raghd, Gomes, Tomás, Kunowska, Natalia, Henriksson, Johan, Park, Jong-Eun, Proserpio, Valentina, Donati, Giacomo et al. · 2018 · Nature
80. Estimating the causal tissues for complex traits and diseases
    GTEx Consortium, Ongen, Halit, Brown, Andrew A, Delaneau, Olivier, Panousis, Nikolaos I, Nica, Alexandra C, Dermitzakis, Emmanouil T · 2017 · Nature Genetics
81. PRC1 catalytic activity is central to polycomb system function
    Blackledge, Neil P., Fursova, Nadezda A., Kelley, Jessica R., Huseyin, Miles K., Feldmann, Angelika, Klose, Robert J. · 2020 · Molecular Cell
82. Clustering of DNA Sequences in Human Promoters
    FitzGerald, Peter C., Shlyakhtenko, Andrey, Mir, Alain A., Vinson, Charles · 2004 · Genome Research
83. Genome-wide DNA methylation levels and altered cortisol stress reactivity following childhood trauma in humans
    Houtepen, Lotte C., Vinkers, Christiaan H., Carrillo-Roa, Tania, Hiemstra, Marieke, van Lier, Pol A., Meeus, Wim, Branje, Susan, Heim, Christine M., Nemeroff, Charles B., Mill, Jonathan et al. · 2016 · Nature Communications
84. Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
    Pott, Sebastian · 2017 · eLife
85. Evolutionarily Dynamic Alternative Splicing of <i>GPR56</i> Regulates Regional Cerebral Cortical Patterning
    Bae, Byoung-Il, Tietjen, Ian, Atabay, Kutay D., Evrony, Gilad D., Johnson, Matthew B., Asare, Ebenezer, Wang, Peter P., Murayama, Ayako Y., Im, Kiho, Lisgo, Steven N. et al. · 2014 · Science
86. Transcription Factor Cooperativity in Early Adipogenic Hotspots and Super-Enhancers
    Siersbæk, Rasmus, Rabiee, Atefeh, Nielsen, Ronni, Sidoli, Simone, Traynor, Sofie, Loft, Anne, Poulsen, Lars La Cour, Rogowska-Wrzesinska, Adelina, Jensen, Ole N., Mandrup, Susanne · 2014 · Cell Reports
87. Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
    Cheng, Yong, Wu, Weisheng, Ashok Kumar, Swathi, Yu, Duonan, Deng, Wulan, Tripic, Tamara, King, David C., Chen, Kuan-Bei, Zhang, Ying, Drautz, Daniela et al. · 2009 · Genome Research
88. Neuronal enhancers are hotspots for DNA single-strand break repair
    Wu, Wei, Kargbo-Hill, Sarah E., Nathan, William J., Paiano, Jacob, Callen, Elsa, Wang, Dongpeng, Shinoda, Kenta, van Wietmarschen, Niek, Colón-Mercado, Jennifer M., Zong, Dali et al. · 2021 · Nature
89. A statin-dependent QTL for GATM expression is associated with statin-induced myopathy
    Mangravite, Lara M., Engelhardt, Barbara E., Medina, Marisa W., Smith, Joshua D., Brown, Christopher D., Chasman, Daniel I., Mecham, Brigham H., Howie, Bryan, Shim, Heejung, Naidoo, Devesh et al. · 2013 · Nature
90. Patterns of de novo tandem repeat mutations and their role in autism
    Mitra, Ileena, Huang, Bonnie, Mousavi, Nima, Ma, Nichole, Lamkin, Michael, Yanicky, Richard, Shleizer-Burko, Sharona, Lohmueller, Kirk E., Gymrek, Melissa · 2021 · Nature
91. Evolution of Hemoglobin and Its Genes
    Hardison, R. C. · 2012 · Cold Spring Harbor Perspectives in Medicine
92. CHARGE and Kabuki Syndromes: Gene-Specific DNA Methylation Signatures Identify Epigenetic Mechanisms Linking These Clinically Overlapping Conditions
    Butcher, Darci T., Cytrynbaum, Cheryl, Turinsky, Andrei L., Siu, Michelle T., Inbar-Feigenberg, Michal, Mendoza-Londono, Roberto, Chitayat, David, Walker, Susan, Machado, Jerry, Caluseriu, Oana et al. · 2017 · The American Journal of Human Genetics
93. Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions
    Girskis, Kelly M., Stergachis, Andrew B., DeGennaro, Ellen M., Doan, Ryan N., Qian, Xuyu, Johnson, Matthew B., Wang, Peter P., Sejourne, Gabrielle M., Nagy, M. Aurel, Pollina, Elizabeth A. et al. · 2021 · Neuron
94. A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing
    Petti, Allegra A., Williams, Stephen R., Miller, Christopher A., Fiddes, Ian T., Srivatsan, Sridhar N., Chen, David Y., Fronick, Catrina C., Fulton, Robert S., Church, Deanna M., Ley, Timothy J. · 2019 · Nature Communications
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