The first thousand days - intestinal microbiology of early life: Establishing a symbiosis
Open accessAbstract
The development of the intestinal microbiota in the first years of life is a dynamic process significantly influenced by early-life nutrition. Pioneer bacteria colonizing the infant intestinal tract and the gradual diversification to a stable climax ecosystem plays a crucial role in establishing host-microbe interactions essential for optimal symbiosis. This colonization process and establishment of symbiosis may profoundly influence health throughout life. Recent developments in microbiologic cultivation-independent methods allow a detailed view of the key players and factors involved in this process and may further elucidate their roles in a healthy gut and immune maturation. Aberrant patterns may lead to identifying key microbial signatures involved in developing immunologic diseases into adulthood, such as asthma and atopic diseases. The central role of early-life nutrition in the developmental human microbiota, immunity, and metabolism offers promising strategies for prevention and treatment of such diseases. This review provides an overview of the development of the intestinal microbiota, its bidirectional relationship with the immune system, and its role in impacting health and disease, with emphasis on allergy, in early life.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Available evidence from human intervention studies is limited to early childhood, where synbiotics have shown positive effects in asthma associated with an increase in bifidobacteria.
“The available evidence from human intervention studies is limited to early childhood, where, for example, synbiotics have shown positive effects in asthma associated with an increase in bifidobacteria (Wopereis et al., 2014; Zhao et al., 2019).”
From Viral Infections, the Microbiome, and Probiotics (2021) · cites this paper as Wopereis et al., 2014
The first 1000 days has been seen to be critical for programming later health, including brain health.
“Indeed, the first 1000 d has been seen to be critical for programming later health, including brain health (253).”
From Diet and the Microbiota–Gut–Brain Axis: Sowing the Seeds of Good Mental Health (2021) · cites this paper as [253]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624 · see citing works
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913 · see citing works
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815 · see citing works
Dietary Modulation of the Human Colonic Microbiota: Introducing the Concept of Prebiotics
Gibson, G. R., & Roberfroid, M. B. (1995) · Journal of Nutrition · doi:10.1093/jn/125.6.1401 · Cited by 7,659 · see citing works
Park, J., Adoro, S., Guinter, T. I., Erman, B., Alag, A., Catálfamo, M., Kimura, M. Y., Cui, Y., Lucas, P. J., Gress, R. E., et al. (2010) · Nature Immunology · doi:10.1038/ni.1840 · Cited by 5,835 · see citing works
Sakaguchi, S., Sakaguchi, N., Asano, M., Itoh, M., & Toda, M. (1995) · The Journal of Immunology · doi:10.4049/jimmunol.155.3.1151 · Cited by 5,608 · see citing works
Hay fever, hygiene, and household size.
Strachan, D. P. (1989) · BMJ · doi:10.1136/bmj.299.6710.1259 · Cited by 5,054 · see citing works
Interactions Between the Microbiota and the Immune System
Hooper, L. V., Littman, D. R., & Macpherson, A. J. (2012) · Science · doi:10.1126/science.1223490 · Cited by 4,173 · see citing works
Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
Maslowski, K. M., Vieira, A. T., Ng, A., Kranich, J., Sierro, F., Yu, D., Schilter, H. C., Rolph, M. S., Mackay, F., Artis, D., et al. (2009) · Nature · doi:10.1038/nature08530 · Cited by 3,241 · see citing works
Development of the Human Infant Intestinal Microbiota
Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A., & Brown, P. O. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050177 · Cited by 2,877 · see citing works
Succession of microbial consortia in the developing infant gut microbiome
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., Angenent, L. T., & Ley, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000081107 · Cited by 2,540 · see citing works
Bifidobacteria can protect from enteropathogenic infection through production of acetate
Fukuda, S., Toh, H., Hase, K., Oshima, K., Nakanishi, Y., Yoshimura, K., Tobe, T., Clarke, J. M., Topping, D. L., Suzuki, T., et al. (2011) · Nature · doi:10.1038/nature09646 · Cited by 2,387 · see citing works
The role of the gut microbiota in nutrition and health
Flint, H. J., Scott, K. P., Louis, P., & Duncan, S. H. (2012) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2012.156 · Cited by 2,203 · see citing works
Composition, variability, and temporal stability of the intestinal microbiota of the elderly
Claesson, M. J., Cusack, S., O'Sullivan, O., Greene-Diniz, R., de Weerd, H., Flannery, E., Marchesi, J. R., Falush, D., Dinan, T., Fitzgerald, G., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000097107 · Cited by 1,754 · see citing works
The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota
Round, J. L., Lee, S. M., Li, J., Tran, G., Jabri, B., Chatila, T. A., & Mazmanian, S. K. (2011) · Science · doi:10.1126/science.1206095 · Cited by 1,604 · see citing works
Reciprocal interactions of the intestinal microbiota and immune system
Maynard, C. L., Elson, C. O., Hatton, R. D., & Weaver, C. T. (2012) · Nature · doi:10.1038/nature11551 · Cited by 1,598 · cited 7× · see citing works
“The mucosal immune system is providing protection from the external environment and directly interacts with the environmental antigens and commensal bacteria (13).”
BackgroundInfluentialInnate immunity of the newborn: basic mechanisms and clinical correlates
Levy, O. (2007) · Nature reviews. Immunology · doi:10.1038/nri2075 · Cited by 1,227 · see citing works
Duncan, S. H., Louis, P., & Flint, H. J. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.10.5810-5817.2004 · Cited by 1,124 · see citing works
The immune geography of IgA induction and function
Macpherson, A. J., McCoy, K. D., Johansen, F.-E., & Brandtzaeg, P. (2007) · Mucosal Immunology · doi:10.1038/mi.2007.6 · Cited by 1,047 · see citing works
Is meconium from healthy newborns actually sterile?
Jiménez, E., Marín, M. L., Martı́n, R., Odriozola, J. M., Olivares, M. M., Xaus, J., Fernández, L., & Rodríguez, J. M. (2008) · Research in Microbiology · doi:10.1016/j.resmic.2007.12.007 · Cited by 944 · see citing works
Martens, E. C., Chiang, H. C., & Gordon, J. I. (2008) · Cell Host & Microbe · doi:10.1016/j.chom.2008.09.007 · Cited by 919 · see citing works
Penders, J., Thijs, C., van den Brandt, P. A., Kummeling, I., Snijders, B., Stelma, F., Adams, H., van Ree, R., & Stobberingh, E. E. (2007) · Gut · doi:10.1136/gut.2006.100164 · Cited by 844 · see citing works
Low diversity of the gut microbiota in infants with atopic eczema
Abrahamsson, T., Jakobsson, H. E., Andersson, A. F., Björkstén, B., Engstrand, L. G., & Jenmalm, M. C. (2011) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2011.10.025 · Cited by 816 · see citing works
Human milk is a source of lactic acid bacteria for the infant gut
Martín, R., Langa, S., Reviriego, C., Jimínez, E., Marín, M. L., Xaus, J., Fernández, L., & Rodríguez, J. M. (2003) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2003.09.028 · Cited by 792 · see citing works
Bisgaard, H., Li, N., Bonnelykke, K., Chawes, B. L. K., Skov, T., Paludan-Müller, G., Stokholm, J., Smith, B., & Krogfelt, K. A. (2011) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2011.04.060 · Cited by 786 · see citing works
Low gut microbiota diversity in early infancy precedes asthma at school age
Abrahamsson, T. R., Jakobsson, H. E., Andersson, A. F., Björkstén, B., Engstrand, L., & Jenmalm, M. C. (2014) · Clinical & Experimental Allergy · doi:10.1111/cea.12253 · Cited by 750 · see citing works
Collado, M. C., Derrien, M., Isolauri, E., de Vos, W. M., & Salminen, S. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01477-07 · Cited by 706 · see citing works
Bacterial Imprinting of the Neonatal Immune System: Lessons From Maternal Cells?
Pérez, P. F., Dore, J. M., Leclerc, M., Levenez, F., Benyacoub, J., Serrant, P., Segura-Roggero, I., Schiffrin, E. J., & Donnet‐Hughes, A. (2007) · PEDIATRICS · doi:10.1542/peds.2006-1649 · Cited by 676 · see citing works
Moro, G. E. (2006) · Archives of Disease in Childhood · doi:10.1136/adc.2006.098251 · Cited by 633 · see citing works
Consumption of human milk oligosaccharides by gut-related microbes
Marcobal, A., Barboza, M., Froehlich, J. W., Block, D. E., German, J. B., Lebrilla, C. B., & Mills, D. A. (2010) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf9044205 · Cited by 568 · see citing works
Fallani, M., Young, D., Scott, J. A., Norin, E. L., Amarri, S., Adam, R., Aguilera, J., Khanna, S., Gil, Á., Edwards, C. A., et al. (2010) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0b013e3181d1b11e · Cited by 559 · see citing works
Arslanoğlu, S., Moro, G. E., Schmitt, J., Tandoi, L., Rizzardi, S., & Boehm, G. (2008) · Journal of Nutrition · doi:10.1093/jn/138.6.1091 · Cited by 515 · see citing works
Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammation
Hill, D. A., Siracusa, M. C., Abt, M. C., Kim, B. S., Kobuley, D., Kubo, M., Kambayashi, T., LaRosa, D. F., Renner, E. D., Orange, J. S., et al. (2012) · Nature Medicine · doi:10.1038/nm.2657 · Cited by 468 · see citing works
Butyrate Inhibits NF-κB Activation in Lamina Propria Macrophages of Patients with Ulcerative Colitis
Lührs, H., Gerke, T., Müller, J. G., Melcher, R., Schauber, J., Boxberger, F., Scheppach, W. M., & Menzel, T. (2002) · Scandinavian Journal of Gastroenterology · doi:10.1080/003655202317316105 · Cited by 468 · see citing works
Establishment and development of intestinal microbiota in preterm neonates
Arboleya, S., Binetti, A. G., Salazar, N., Fernández, N., Sánchez, G. S., Hernández‐Barranco, A. M., Margollés, A., Reyes‐Gavilán, C. G. D. L., & Gueimonde, M. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01261.x · Cited by 439 · see citing works
The role of the intestinal microbiota in the development of atopic disorders
Penders, J., Stobberingh, E. E., van den Brandt, P. A., & Thijs, C. T. (2007) · Allergy · doi:10.1111/j.1398-9995.2007.01462.x · Cited by 435 · see citing works
Reduced diversity in the early fecal microbiota of infants with atopic eczema
Wang, M., Karlsson, C., Olsson, C., Adlerberth, I., Wold, A. E., Strachan, D. P., Martricardi, P. M., Åberg, N., Perkin, M. R., Tripodi, S., et al. (2007) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2007.09.011 · Cited by 434 · see citing works
Martı́n, R., Jiménez, E., Heilig, H. G. H. J., Fernández, L., Marín, M. L., Zoetendal, E. G., & Rodríguez, J. M. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02063-08 · Cited by 434 · see citing works
Knol, J., Scholtens, P. A. M. J., Kafka, C., Steenbakkers, J., Gro, S., Helm, K., Klarczyk, M., pfer, H. S., ckler, H.-M. B., & Wells, J. (2004) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/00005176-200501000-00007 · Cited by 422 · see citing works
Self-citationThe ‘microflora hypothesis’ of allergic diseases
Noverr, M. C., & Huffnagle, G. B. (2005) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2005.02379.x · Cited by 394 · see citing works
Fallani, M., Amarri, S., Uusijärvi, A., Adam, R., Khanna, S., Aguilera, J., Gil, Á., Vieites, J. M., Norin, E. L., Young, D., et al. (2011) · Microbiology · doi:10.1099/mic.0.042143-0 · Cited by 393 · see citing works
Altered early infant gut microbiota in children developing allergy up to 5 years of age
Sjögren, Y. M., Jenmalm, M. C., Böttcher, M. F., Björkstén, B., & Sverremark‐Ekström, E. (2009) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2008.03156.x · Cited by 378 · see citing works
Altered Fecal Microbiota Composition Associated with Food Allergy in Infants
Ling, Z., Li, Z., Liu, X., Cheng, Y., Luo, Y., Tong, X., Li, Y., Wang, Y., Sun, J., Li, L., et al. (2014) · Applied and Environmental Microbiology · doi:10.1128/aem.00003-14 · Cited by 375 · see citing works
Gut microbiota and development of atopic eczema in 3 European birth cohorts
Adlerberth, I., Strachan, D. P., Matricardi, P. M., Ahrné, S., Orfei, L., Åberg, N., Perkin, M. R., Tripodi, S., Hesselmar, B., Saalman, R., et al. (2007) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2007.05.018 · Cited by 354 · see citing works
Human milk: a source of more life than we imagine
Jeurink, P. V., van Bergenhenegouwen, J., Jiménez, E., Knippels, L. M. J., Fernández, L., Garssen, J., Knol, J., Rodríguez, J. M., & Martín, R. (2013) · Beneficial Microbes · doi:10.3920/bm2012.0040 · Cited by 354 · see citing works
Self-citationProbiotic Bifidobacterium breve Induces IL-10-Producing Tr1 Cells in the Colon
Jeon, S. G., Kayama, H., Ueda, Y., Takahashi, T., Asahara, T., Tsuji, H., Tsuji, N. M., Kiyono, H., Ma, J. S., Kusu, T., et al. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002714 · Cited by 343 · see citing works
Early life: gut microbiota and immune development in infancy
Martin, R., Nauta, A., Ben Amor, K., Knippels, L., Knol, J., & Garssen, J. (2010) · Beneficial Microbes · doi:10.3920/bm2010.0027 · Cited by 338 · see citing works
Self-citationBifidobacterium and Lactobacillus DNA in the human placenta
Satokari, R. M., Grönroos, T., Laitinen, K., Salminen, S., & Isolauri, E. (2008) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2008.02475.x · Cited by 304 · see citing works
Establishment of the intestinal microbiota and its role for atopic dermatitis in early childhood
Penders, J., Gerhold, K., Stobberingh, E. E., Thijs, C. T., Zimmermann, K., Lau, S., & Hamelmann, E. H. (2013) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2013.05.043 · Cited by 299 · see citing works
Intestinal microbiota of infants with colic: development and specific signatures
de Weerth, C., Fuentes, S., Puylaert, P., & de Vos, W. M. (2013) · Pediatrics · doi:10.1542/peds.2012-1449 · Cited by 279 · see citing works
Cell evolution and Earth history: stasis and revolution
Cavalier‐Smith, T. (2006) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2006.1842 · Cited by 277 · see citing works
Frantz, A. L., Rogier, E. W., Weber, C. R., Shen, L., Cohen, D. A., Fenton, L. A., Bruno, M. E. C., & Kaetzel, C. S. (2012) · Mucosal Immunology · doi:10.1038/mi.2012.23 · Cited by 230 · see citing works
Makino, H., Kushiro, A., Ishikawa, E., Muylaert, D., Kubota, H., Sakai, T., Oishi, K., Martı́n, R., Amor, K. B., Oozeer, R., et al. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.05346-11 · Cited by 197 · see citing works
Self-citationImproved Detection of Bifidobacteria with Optimised 16S rRNA-Gene Based Pyrosequencing
Sim, K., Cox, M. J., Wopereis, H., Martı́n, R., Knol, J., Li, M., Cookson, W., Moffatt, M. F., & Kroll, J. S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032543 · Cited by 196 · see citing works
Self-citationScholtens, P. A. M. J., Alliet, P. L., Raes, M., Alles, M. S., Kroes, H., Boehm, G., Knippels, L. M. J., Knol, J., & Vandenplas, Y. (2008) · Journal of Nutrition · doi:10.1093/jn/138.6.1141 · Cited by 194 · see citing works
Self-citationIsmail, I. H., Oppedisano, F., Joseph, S. J., Boyle, R. J., Licciardi, P. V., Robins-Browne, R. M., & Tang, M. L. K. (2012) · Pediatric Allergy and Immunology · doi:10.1111/j.1399-3038.2012.01328.x · Cited by 189 · see citing works
Synbiotics prevent asthma-like symptoms in infants with atopic dermatitis
van der Aa, L. B., van Aalderen, W. M. C., Heymans, H. S. A., Henk Sillevis Smitt, J., Nauta, A. J., Knippels, L. M. J., Ben Amor, K., Sprikkelman, A. B., & the Synbad Study Group (2011) · Allergy · doi:10.1111/j.1398-9995.2010.02416.x · Cited by 172 · see citing works
Vitamin B12 synthesis by human small intestinal bacteria
Albert, M. J., Mathan, V. I., & Baker, S. J. (1980) · Nature · doi:10.1038/283781a0 · Cited by 171 · see citing works
Unbalance of intestinal microbiota in atopic children
Candela, M., Rampelli, S., Turroni, S., Severgnini, M., Consolandi, C., Bellis, G. D., Masetti, R., Ricci, G., Pession, A., & Brigidi, P. (2012) · BMC Microbiology · doi:10.1186/1471-2180-12-95 · Cited by 166 · see citing works
Bruzzese, E., Volpicelli, M., Squeglia, V., Bruzzese, D., Salvini, F. M., Bisceglia, M., Lionetti, P., Cinquetti, M., Iacono, G., Amarri, S., et al. (2009) · Clinical Nutrition · doi:10.1016/j.clnu.2009.01.008 · Cited by 164 · see citing works
High intestinal IgA associates with reduced risk of IgE‐associated allergic diseases
Kukkonen, A. K., Kuitunen, M., Haahtela, T., Korpela, R., Poussa, T. A., & Savilahti, E. (2009) · Pediatric Allergy and Immunology · doi:10.1111/j.1399-3038.2009.00907.x · Cited by 162 · see citing works
Conly, J. M., Stein, K., Worobetz, L., & Rutledge-Harding, S. (1994) · PubMed · Cited by 162 · see citing works
Effect of a new synbiotic mixture on atopic dermatitis in infants: a randomized‐controlled trial
van der Aa, L. B., Heymans, H. S. A., van Aalderen, W. M. C., Smitt, J. H. S., Knol, J., Amor, K. B., Goossens, D. A. M., Sprikkelman, A. B., & the Synbad Study Group (2010) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2010.03465.x · Cited by 160 · see citing works
Self-citationThe Immunologic Functions of the Neonatal Fc Receptor for IgG
Räth, T., Kuo, T. T., Baker, K., Qiao, S., Kobayashi, K., Yoshida, M., Roopenian, D. C., Fiebiger, E., Lencer, W. I., & Blumberg, R. S. (2012) · Journal of Clinical Immunology · doi:10.1007/s10875-012-9768-y · Cited by 159 · see citing works
Johansson, M. A., Sjögren, Y. M., Persson, J., Nilsson, C. A., & Sverremark‐Ekström, E. (2011) · PLoS ONE · doi:10.1371/journal.pone.0023031 · Cited by 154 · see citing works
Nylund, L., Satokari, R. M., Nikkilä, J., Rajilić-Stojanović, M. D., Kalliomäki, M. A., Isolauri, E., Salminen, S., & de Vos, W. M. (2013) · BMC Microbiology · doi:10.1186/1471-2180-13-12 · Cited by 152 · see citing works
Diversity of the gut microbiota and eczema in early life
Forno, E., Onderdonk, A. B., McCracken, J. P., Litonjua, A. A., Laskey, D. H., Delaney, M. L., DuBois, A. M., Gold, D. R., RYAN, L. M., Weiss, S. T., et al. (2008) · Clinical and Molecular Allergy · doi:10.1186/1476-7961-6-11 · Cited by 133 · see citing works
Atopic dermatitis: a candidate for disease‐modifying strategy
Bieber, T., Cork, M., & Reitamo, S. (2012) · Allergy · doi:10.1111/j.1398-9995.2012.02845.x · Cited by 131 · see citing works
de Kivit, S., Saeland, E., Kraneveld, A. D., van de Kant, H. J. G., Schouten, B., van Esch, B. C. A. M., Knol, J., Sprikkelman, A. B., van der Aa, L. B., Knippels, L. M. J., et al. (2012) · Allergy · doi:10.1111/j.1398-9995.2011.02771.x · Cited by 124 · see citing works
Self-citationMatsumiya, Y., Kato, N., Watanabe, K., & Kato, H. (2002) · Journal of Infection and Chemotherapy · doi:10.1007/s101560200005 · Cited by 123 · see citing works
Chagoyán, Ó. C. T., Fallani, M., Maldonado, J., Vieites, J. M., Khanna, S., Edwards, C. A., Dore, J. M., & Gil, Á. (2011) · International Archives of Allergy and Immunology · doi:10.1159/000323893 · Cited by 120 · see citing works
Early intestinal Bacteroides fragilis colonisation and development of asthma
Vael, C., Nelen, V., Verhulst, S. L., Goossens, H., & Desager, K. (2008) · BMC Pulmonary Medicine · doi:10.1186/1471-2466-8-19 · Cited by 119 · see citing works
Genuneit, J. (2012) · Pediatric Allergy and Immunology · doi:10.1111/j.1399-3038.2012.01312.x · Cited by 116 · see citing works
Gore, C., Munro, K., Lay, C., Bibiloni, R., Morris, J., Woodcock, A. A., Čustović, A., & Tannock, G. W. (2007) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2007.07.061 · Cited by 116 · see citing works
Arslanoğlu, S., Moro, G. E., Boehm, G., Wienz, F., Stahl, B., & Bertino, E. (2012) · PubMed · Cited by 115 · see citing works
Roger, L. C., & McCartney, A. L. (2010) · Microbiology · doi:10.1099/mic.0.041913-0 · Cited by 115 · see citing works
Comparative Analysis of Fecal Microbiota in Infants with and without Eczema
Hong, P., Lee, B. W., Aw, M., Shek, L. P., Yap, G. C., Chua, K. Y., & Liu, W. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009964 · Cited by 112 · see citing works
Theodor Escherich: The First Pediatric Infectious Diseases Physician?
Shulman, S. T., Friedmann, H., & Sims, R. H. (2007) · Clinical Infectious Diseases · doi:10.1086/521946 · Cited by 109 · see citing works
Anti-inflammatory potential of probiotics: lipoteichoic acid makes a difference
Lebeer, S., Claes, I. J. J., & Vanderleyden, J. (2011) · Trends in Microbiology · doi:10.1016/j.tim.2011.09.004 · Cited by 106 · see citing works
Rodriguez, B., Prioult, G., Hacini‐Rachinel, F., Moine, D., Bruttin, A., Ngom‐Bru, C., Labellie, C., Nicolis, I., Berger, B. W., Mercenier, A., et al. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01207.x · Cited by 106 · see citing works
The gut microbiota—a clinical perspective on lessons learned
Shanahan, F. (2012) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2012.145 · Cited by 100 · see citing works
Vael, C., Vanheirstraeten, L., Desager, K., & Goossens, H. (2011) · BMC Microbiology · doi:10.1186/1471-2180-11-68 · Cited by 95 · see citing works
Oral tolerance in neonates: from basics to potential prevention of allergic disease
Verhasselt, V. (2010) · Mucosal Immunology · doi:10.1038/mi.2010.25 · Cited by 93 · see citing works
Romagnani, S. (2007) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2007.04.005 · Cited by 92 · see citing works
Nakayama, J., Kobayashi, T., Tanaka, S., Korenori, Y., Tateyama, A., Sakamoto, N., Kiyohara, C., Shirakawa, T., & Sonomoto, K. (2011) · FEMS Immunology & Medical Microbiology · doi:10.1111/j.1574-695x.2011.00872.x · Cited by 87 · see citing works
White, R. A., Bjørnholt, J. V., Baird, D. D., Midtvedt, T., Harris, J. R., Pagano, M., Hide, W. A., Rudi, K., Moen, B., Iszatt, N., et al. (2013) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003042 · Cited by 85 · see citing works
Suzuki, S., Shimojo, N., Tajiri, Y., Kumemura, M., & Kohno, Y. (2007) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2007.02676.x · Cited by 66 · see citing works
Lewis, M. C., Inman, C. F., Patel, D., Schmidt, B., Mulder, I. E., Miller, B. G., Gill, B. P., Pluske, J. R., Kelly, D., Stokes, C., et al. (2012) · Pediatric Allergy and Immunology · doi:10.1111/j.1399-3038.2011.01258.x · Cited by 61 · see citing works
The combined effects of family size and farm exposure on childhood hay fever and atopy
Genuneit, J., Strachan, D. P., Büchele, G., Weber, J., Loss, G. J., Sozańska, B., Boznański, A., Horak, E., Heederik, D. J. J., Braun‐Fahrländer, C., et al. (2013) · Pediatric Allergy and Immunology · doi:10.1111/pai.12053 · Cited by 58 · see citing works
Songjinda, P., Nakayama, J., Tateyama, A., TANAKA, S., TSUBOUCHI, M., Kiyohara, C., Shirakawa, T., & Sonomoto, K. (2007) · Bioscience Biotechnology and Biochemistry · doi:10.1271/bbb.70154 · Cited by 50 · see citing works
Storrø, O., Øien, T., Langsrud, Ø., Rudi, K., Dotterud, C. K., & Johnsen, R. (2011) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2011.03817.x · Cited by 49 · see citing works
Die Darmbakterien des Säuglings und ihre Beziehungen zur Physiologie der Verdauung
Escherich, T. (1886) · Cited by 49 · see citing works
Hoyles, L., & McCartney, A. L. (2009) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2009.01741.x · Cited by 45 · see citing works
134 Effect of Colonic Short Chain Fatty Acids, Lactate and PH on The Growth of Common Gut Pathogens
van Limpt, C. J. P., Crienen, A., Vriesema, A. J. M., et al. (2004) · Pediatric Research · doi:10.1203/00006450-200409000-00157 · Cited by 26 · see citing works
Waligora‐Dupriet, A., Campeotto, F., Romero, K., Mangin, I., Rouzaud, G., Ménard, O., Suau, A., Soulaines, P., Nicolis, I., Kapel, N., et al. (2011) · Anaerobe · doi:10.1016/j.anaerobe.2011.04.003 · Cited by 26 · see citing works
van Zwol, A., van den Berg, A., Knol, J., Twisk, J. W. R., Fetter, W., & van Elburg, R. M. (2010) · Acta Paediatrica · doi:10.1111/j.1651-2227.2010.01934.x · Cited by 18 · see citing works
Self-citationThe fecal bifidobacterial transcriptome of adults: A microarray approach
Klaassens, E. S., Amor, K. B., Vriesema, A. J. M., Vaughan, E. E., & de Vos, W. M. (2011) · Gut Microbes · doi:10.4161/gmic.2.4.16798 · Cited by 11 · see citing works
Abrahamsson, T., Jakobsson, H. E., Andersson, A. F., et al. (2012) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2012.10.045 · Cited by 7 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Cryan, J. F., O'Riordan, K. J., Cowan, C. S. M., Sandhu, K. V., Bastiaanssen, T. F. S., Boehme, M., Codagnone, M. G., Cussotto, S., Fulling, C., Golubeva, A. V., et al. (2019) · Physiological Reviews · doi:10.1152/physrev.00018.2018 · Cited by 5,286 · see citing works
Milani, C., Duranti, S., Bottacini, F., Casey, E., Turroni, F., Mahony, J., Belzer, C., Delgado Palacio, S., Arboleya Montes, S., Mancabelli, L., et al. (2017) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00036-17 · Cited by 1,950 · see citing works
Self-citationFate, activity, and impact of ingested bacteria within the human gut microbiota
Derrien, M., & van Hylckama Vlieg, J. E. T. (2015) · Trends in Microbiology · doi:10.1016/j.tim.2015.03.002 · Cited by 605 · see citing works
Diet and the Microbiota–Gut–Brain Axis: Sowing the Seeds of Good Mental Health
Berding, K., Vlckova, K., Marx, W., Schellekens, H., Stanton, C., Clarke, G., Jacka, F., Dinan, T. G., & Cryan, J. F. (2021) · Advances in Nutrition · doi:10.1093/advances/nmaa181 · Cited by 451 · see citing works
Savignac, H. M., Kiely, B., Dinan, T. G., & Cryan, J. F. (2014) · Neurogastroenterology & Motility · doi:10.1111/nmo.12427 · Cited by 418 · see citing works
Microbiota regulation of the mammalian gut-brain axis
Burokas, A., Moloney, R. D., Dinan, T. G., & Cryan, J. F. (2015) · Advances in applied microbiology · doi:10.1016/bs.aambs.2015.02.001 · Cited by 300 · see citing works
Perinatal factors affect the gut microbiota up to four years after birth
Fouhy, F., Watkins, C., Hill, C. J., O’Shea, C.-A., Nagle, B., Dempsey, E. M., O’Toole, P. W., Ross, R. P., Ryan, C. A., & Stanton, C. (2019) · Nature Communications · doi:10.1038/s41467-019-09252-4 · Cited by 274 · see citing works
Robertson, R. C., Seira Oriach, C., Murphy, K., Moloney, G. M., Cryan, J. F., Dinan, T. G., Paul Ross, R., & Stanton, C. (2017) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2016.07.145 · Cited by 268 · see citing works
Viral Infections, the Microbiome, and Probiotics
Harper, A., Vijayakumar, V., Ouwehand, A. C., ter Haar, J., Obis, D., Espadaler, J., Binda, S., Desiraju, S., & Day, R. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.596166 · Cited by 177 · see citing works
Davis, E. C., Wang, M., & Donovan, S. M. (2017) · Gut Microbes · doi:10.1080/19490976.2016.1278104 · Cited by 169 · see citing works
Liddicoat, C., Sydnor, H., Cando-Dumancela, C., Dresken, R., Liu, J., Gellie, N. J. C., Mills, J. G., Young, J. M., Weyrich, L. S., Hutchinson, M. R., et al. (2020) · Science of The Total Environment · doi:10.1016/j.scitotenv.2019.134684 · Cited by 140 · see citing works
The connection between microbiome and schizophrenia
Golofast, B., & Vales, K. (2020) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2019.12.011 · Cited by 92 · see citing works
Cow’s Milk Allergy: Immunomodulation by Dietary Intervention
D’Auria, E., Salvatore, S., Pozzi, E., Mantegazza, C., Sartorio, M. U. A., Pensabene, L., Baldassarre, M. E., Agosti, M., Vandenplas, Y., & Zuccotti, G. (2019) · Nutrients · doi:10.3390/nu11061399 · Cited by 70 · see citing works
Asthma in the Precision Medicine Era: Biologics and Probiotics
Chiu, C.-J., & Huang, M.-T. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22094528 · Cited by 60 · see citing works
Xiao, L., Gong, C., Ding, Y., Ding, G., Xu, X., Deng, C., Ze, X., Malard, P., & Ben, X. (2019) · Beneficial Microbes · doi:10.3920/bm2019.0025 · Cited by 48 · see citing works
Gut-to-Brain Axis in Autism Spectrum Disorders
Kraneveld, A. D., Szklany, K., de Theije, C. G. M., & Garssen, J. (2016) · International review of neurobiology · doi:10.1016/bs.irn.2016.09.001 · Cited by 47 · see citing works
Szklany, K., Wopereis, H., de Waard, C., van Wageningen, T., An, R., van Limpt, K., Knol, J., Garssen, J., Knippels, L. M. J., Belzer, C., et al. (2020) · Nutritional Neuroscience · doi:10.1080/1028415x.2019.1576362 · Cited by 46 · see citing works
Self-citationIdentifying the deficiencies of currently available <scp>CGM</scp> to improve uptake and benefit
Barnard‐Kelly, K. D., Martínez‐Brocca, M. A., Glatzer, T., & Oliver, N. (2024) · Diabetic Medicine · doi:10.1111/dme.15338 · Cited by 37 · see citing works
Breastfeeding: a key modulator of gut microbiota characteristics in late infancy
Matsuyama, M., Gomez-Arango, L. F., Fukuma, N. M., Morrison, M., Davies, P. S. W., & Hill, R. J. (2019) · Journal of Developmental Origins of Health and Disease · doi:10.1017/s2040174418000624 · Cited by 22 · see citing works
Simione, M., Harshman, S. G., Castro, I., Linnemann, R., Roche, B., Ajami, N. J., Petrosino, J. F., Raspini, B., Portale, S., Camargo, Jr., et al. (2020) · Current Developments in Nutrition · doi:10.1093/cdn/nzz133 · Cited by 13 · see citing works
- Authors
- Wopereis, H., Oozeer, R., Knipping, K., Belzer, C., & Knol, J.
- Affiliations
- Nutricia Research (Netherlands) (NL)
- Wageningen University & Research (NL)
- Corresponding author
- Knol, Jan
- Venue
- Pediatric Allergy and Immunology
- Publisher
- Wiley
- Published
- 2014-06-05
- Volume
- 25
- Issue
- 5
- Pages
- 428-438
- ISSN
- 0905-6157 (ISSN-L)
- 1399-3038
- OpenAlex
- W2063527523
- Cited by
- 352
- References
- 98
- Citations by year
- 2026: 23 · 2025: 26 · 2024: 18 · 2023: 18 · 2022: 40 · 2021: 40 · 2020: 31 · 2019: 41 · 2018: 42 · 2017: 29 · 2016: 22 · 2015: 17 · 2014: 5
- FWCI
- 2.29
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Pediatric Allergy and Immunology (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Socio-Environmental Systems Modeling (acceptedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Keywords
- gut microbiota, first 1000 days, infant gut colonization, host-microbe symbiosis, early life nutrition, immune system maturation, allergy, asthma, atopic diseases, microbial signatures
- MeSH terms
- Child, Preschool, Humans, Hypersensitivity, Infant, Infant, Newborn, Intestines, Symbiosis, Metagenome, Microbiota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review