Neuronal dark matter: the emerging role of microRNAs in neurodegeneration
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MicroRNAs (miRNAs) are small, abundant RNA molecules that constitute part of the cell's non-coding RNA "dark matter." In recent years, the discovery of miRNAs has revolutionised the traditional view of gene expression and our understanding of miRNA biogenesis and function has expanded. Altered expression of miRNAs is increasingly recognized as a feature of many disease states, including neurodegeneration. Here, we review the emerging role for miRNA dysfunction in Alzheimer's disease, Parkinson's disease, amyotrophic lateral sclerosis (ALS) and Huntington's disease pathogenesis. We emphasize the complex nature of gene regulatory networks and the need for systematic studies, with larger sample cohorts than have so far been reported, to reveal the most important miRNA regulators in disease. Finally, miRNA diversity and their potential to target multiple pathways, offers novel clinical applications for miRNAs as biomarkers and therapeutic agents in neurodegenerative diseases.
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miRNAs play an important role in neurodegenerative diseases, including ALS.
“Growing evidence suggests that miRNAs play an important role in neurodegenerative diseases, including ALS (Akerblom et al., 2012; Goodall et al., 2013; Zhu et al., 2013; Parisi et al., 2016).”
From Downregulation of MicroRNA-193b-3p Promotes Autophagy and Cell Survival by Targeting TSC1/mTOR Signaling in NSC-34 Cells (2017) · cites this paper as Goodall et al., 2013
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- Al-Chalabi A. Jones A. Troakes C. King A. Al-Sarraj S. van den Berg L. H. (2012). The genetics and neuropathology of amyotrophic lateral sclerosis. Acta Neuropathol. 124, 339– 352 10.1007/s00401-012-1022-4 22903397 · DOI
- Alvarez-Erviti L. Seow Y. Schapira A. H. Rodriguez-Oroz M. C. Obeso J. A. Cooper J. M. (2013). Influence of microRNA deregulation on chaperone-mediated autophagy and alpha-synuclein pathology in Parkinson's disease. Cell Death Dis. 4, e545 10.1038/cddis.2013.73 23492776 PMC3615743 · DOI
- Asikainen S. Rudgalvyte M. Heikkinen L. Louhiranta K. Lakso M. Wong G. (2010). Global microRNA expression profiling of Caenorhabditis elegans Parkinson's disease models. J. Mol. Neurosci. 41, 210– 218 10.1007/s12031-009-9325-1 20091141 · DOI · Paper page
- Augustin R. Endres K. Reinhardt S. Kuhn P. H. Lichtenthaler S. F. Hansen J. (2012). Computational identification and experimental validation of microRNAs binding to the Alzheimer-related gene ADAM10. BMC Med. Genet. 13: 35 10.1186/1471-2350-13-35 22594617 PMC3459808 · DOI
- Avramopoulos D. (2009). Genetics of Alzheimer's disease: recent advances. Genome Med. 1, 34 10.1186/gm34 19341505 PMC2664945 · DOI · Paper page
- Babiarz J. E. Ruby J. G. Wang Y. Bartel D. P. Blelloch R. (2008). Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev. 22, 2773– 2785 10.1101/gad.1705308 18923076 PMC2569885 · DOI
- Baccarini A. Chauhan H. Gardner T. J. Jayaprakash A. D. Sachidanandam R. Brown B. D. (2011). Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells. Curr. Biol. 21, 369– 376 10.1016/j.cub.2011.01.067 21353554 PMC3088433 · DOI
- Bartel D. P. (2009). MicroRNAs: target recognition and regulatory functions. Cell 136, 215– 233 10.1016/j.cell.2009.01.002 19167326 PMC3794896 · DOI · Paper page
- Berezikov E. Chung W. J. Willis J. Cuppen E. Lai E. C. (2007). Mammalian mirtron genes. Mol. Cell 28, 328– 336 10.1016/j.molcel.2007.09.028 17964270 PMC2763384 · DOI
- Berezikov E. Guryev V. van de Belt J. Wienholds E. Plasterk R. H. Cuppen E. (2005). Phylogenetic shadowing and computational identification of human microRNA genes. Cell 120, 21– 24 10.1016/j.cell.2004.12.031 15652478 · DOI · Paper page
- Bertram L. Lill C. M. Tanzi R. E. (2010). The genetics of Alzheimer disease: back to the future. Neuron 68, 270– 281 10.1016/j.neuron.2010.10.013 20955934 · DOI · Paper page
- Bertram L. McQueen M. B. Mullin K. Blacker D. Tanzi R. E. (2007). Systematic meta-analyses of Alzheimer disease genetic association studies: the AlzGene database. Nat. Genet. 39, 17– 23 10.1038/ng1934 17192785 · DOI · Paper page
- Bettens K. Brouwers N. Engelborghs S. Van Miegroet H. De Deyn P. P. Theuns J. (2009). APP and BACE1 miRNA genetic variability has no major role in risk for Alzheimer disease. Hum. Mutat. 30, 1207– 1213 10.1002/humu.21027 19462468 · DOI
- Bhattacharyya S. N. Habermacher R. Martine U. Closs E. I. Filipowicz W. (2006). Relief of microRNA-mediated translational repression in human cells subjected to stress. Cell 125, 1111– 1124 10.1016/j.cell.2006.04.031 16777601 · DOI
- Braak H. Braak E. (1995). Staging of Alzheimer's disease-related neurofibrillary changes. Neurobiol. Aging 16, 271– 278 discussion: 278–284. 10.1016/0197-4580(95)00021-6 7566337 · DOI · Paper page
- Buratti E. De Conti L. Stuani C. Romano M. Baralle M. Baralle F. (2010). Nuclear factor TDP-43 can affect selected microRNA levels. FEBS J. 277, 2268– 2281 10.1111/j.1742-4658.2010.07643.x 20423455 · DOI
- Campos-Melo D. Droppelmann C. A. He Z. Volkening K. Strong M. J. (2013). Altered microRNA expression profile in amyotrophic lateral sclerosis: a role in the regulation of NFL mRNA levels. Mol. Brain 6, 26 10.1186/1756-6606-6-26 23705811 PMC3668997 · DOI
- Cardo L. F. Coto E. de Mena L. Ribacoba R. Moris G. Menendez M. (2013). Profile of microRNAs in the plasma of Parkinson's disease patients and healthy controls. J. Neurol. 260, 1420– 1422 10.1007/s00415-013-6900-8 23543376 · DOI
- Carthew R. W. Sontheimer E. J. (2009). Origins and Mechanisms of miRNAs and siRNAs. Cell 136, 642– 655 10.1016/j.cell.2009.01.035 19239886 PMC2675692 · DOI
- Chatterjee S. Grosshans H. (2009). Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 461, 546– 549 10.1038/nature08349 19734881 · DOI
- Cheloufi S. Dos Santos C. O. Chong M. M. Hannon G. J. (2010). A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 465, 584– 589 10.1038/nature09092 20424607 PMC2995450 · DOI · Paper page
- Chen X. Ba Y. Ma L. Cai X. Yin Y. Wang K. (2008). Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res. 18, 997– 1006 10.1038/cr.2008.282 18766170 · DOI · Paper page
- Cho H. J. Liu G. Jin S. M. Parisiadou L. Xie C. Yu J. (2013). MicroRNA-205 regulates the expression of Parkinson's disease-related leucine-rich repeat kinase 2 protein. Hum. Mol. Genet. 22, 608– 620 10.1093/hmg/dds470 23125283 PMC3542867 · DOI
- Chuang J. C. Jones P. A. (2007). Epigenetics and microRNAs. Pediatr. Res. 61, 24R– 29R 10.1203/pdr.0b013e3180457684 17413852 · DOI
- Conaco C. Otto S. Han J. J. Mandel G. (2006). Reciprocal actions of REST and a microRNA promote neuronal identity. Proc. Natl. Acad. Sci. U.S.A. 103, 2422– 2427 10.1073/pnas.0511041103 16461918 PMC1413753 · DOI · Paper page
- Coppede F. (2012). Genetics and epigenetics of Parkinson's disease. ScientificWorldJournal 2012, 489830 10.1100/2012/489830 22623900 PMC3353471 · DOI
- Czech B. Hannon G. J. (2011). Small RNA sorting: matchmaking for Argonautes. Nat. Rev. Genet. 12, 19– 31 10.1038/nrg2916 21116305 PMC3703915 · DOI
- Dachsel J. C. Taylor J. P. Mok S. S. Ross O. A. Hinkle K. M. Bailey R. M. (2007). Identification of potential protein interactors of Lrrk2. Parkinsonism Relat. Disord. 13, 382– 385 10.1016/j.parkreldis.2007.01.008 17400507 PMC2970619 · DOI
- De Felice B. Guida M. Coppola C. De Mieri G. Cotrufo R. (2012). A miRNA signature in leukocytes from sporadic amyotrophic lateral sclerosis. Gene 508, 35– 40 10.1016/j.gene.2012.07.058 22903028 · DOI
- Delay C. Mandemakers W. Hebert S. S. (2012). MicroRNAs in Alzheimer's disease. Neurobiol. Dis. 46, 285– 290 10.1016/j.nbd.2012.01.003 22285895 · DOI · Paper page
- Denli A. M. Tops B. B. Plasterk R. H. Ketting R. F. Hannon G. J. (2004). Processing of primary microRNAs by the Microprocessor complex. Nature 432, 231– 235 10.1038/nature03049 15531879 · DOI · Paper page
- Diederichs S. Haber D. A. (2007). Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression. Cell 131, 1097– 1108 10.1016/j.cell.2007.10.032 18083100 · DOI
- Doxakis E. (2010). Post-transcriptional regulation of alpha-synuclein expression by mir-7 and mir-153. J. Biol. Chem. 285, 12726– 12734 10.1074/jbc.M109.086827 20106983 PMC2857101 · DOI
- Ebert M. S. Sharp P. A. (2010). MicroRNA sponges: progress and possibilities. RNA 16, 2043– 2050 10.1261/rna.2414110 20855538 PMC2957044 · DOI · Paper page
- Ebert M. S. Sharp P. A. (2012). Roles for microRNAs in conferring robustness to biological processes. Cell 149, 515– 524 10.1016/j.cell.2012.04.005 22541426 PMC3351105 · DOI · Paper page
- Elmen J. Lindow M. Schutz S. Lawrence M. Petri A. Obad S. (2008). LNA-mediated microRNA silencing in non-human primates. Nature 452, 896– 899 10.1038/nature06783 18368051 · DOI · Paper page
- Ender C. Krek A. Friedlander M. R. Beitzinger M. Weinmann L. Chen W. (2008). A human snoRNA with microRNA-like functions. Mol. Cell 32, 519– 528 10.1016/j.molcel.2008.10.017 19026782 · DOI
- Etheridge A. Lee I. Hood L. Galas D. Wang K. (2011). Extracellular microRNA: a new source of biomarkers. Mutat. Res. 717, 85– 90 10.1016/j.mrfmmm.2011.03.004 21402084 PMC3199035 · DOI
- Fenn A. M. Smith K. M. Lovett-Racke A. E. Guerau-de-Arellano M. Whitacre C. C. Godbout J. P. (2013). Increased micro-RNA 29b in the aged brain correlates with the reduction of insulin-like growth factor-1 and fractalkine ligand. Neurobiol. Aging 34, 2748– 2758 10.1016/j.neurobiolaging.2013.06.007 23880139 PMC3779520 · DOI
- Gaughwin P. M. Ciesla M. Lahiri N. Tabrizi S. J. Brundin P. Bjorkqvist M. (2011). Hsa-miR-34b is a plasma-stable microRNA that is elevated in pre-manifest Huntington's disease. Hum. Mol. Genet. 20, 2225– 2237 10.1093/hmg/ddr111 21421997 · DOI
- Geekiyanage H. Jicha G. A. Nelson P. T. Chan C. (2012). Blood serum miRNA: non-invasive biomarkers for Alzheimer's disease. Exp. Neurol. 235, 491– 496 10.1016/j.expneurol.2011.11.026 22155483 PMC3361462 · DOI
- Gehrke S. Imai Y. Sokol N. Lu B. (2010). Pathogenic LRRK2 negatively regulates microRNA-mediated translational repression. Nature 466, 637– 641 10.1038/nature09191 20671708 PMC3049892 · DOI
- Gonzalez-Alegre P. (2007). Therapeutic RNA interference for neurodegenerative diseases: From promise to progress. Pharmacol. Ther. 114, 34– 55 10.1016/j.pharmthera.2007.01.003 17316816 · DOI
- Goodall E. F. Bury J. J. Cooper-Knock J. Shaw P. J. Kirby J. (2012). “Genetics of familial amyotrophic lateral sclerosis, amyotrophic lateral sclerosis,” in Amyotrophic Lateral Sclerosis, ed Maurer M. H. (Rijeka: InTech), 517– 536 10.5772/32498 · DOI
- Gregory R. I. Yan K. P. Amuthan G. Chendrimada T. Doratotaj B. Cooch N. (2004). The Microprocessor complex mediates the genesis of microRNAs. Nature 432, 235– 240 10.1038/nature03120 15531877 · DOI
- Griffiths-Jones S. Saini H. K. van Dongen S. Enright A. J. (2008). miRBase: tools for microRNA genomics. Nucleic Acids Res. 36, D154– D158 10.1093/nar/gkm952 17991681 PMC2238936 · DOI
- Haramati S. Chapnik E. Sztainberg Y. Eilam R. Zwang R. Gershoni N. (2010). miRNA malfunction causes spinal motor neuron disease. Proc. Natl. Acad. Sci. U.S.A. 107, 13111– 13116 10.1073/pnas.1006151107 20616011 PMC2919953 · DOI
- Hardy J. Lewis P. Revesz T. Lees A. Paisan-Ruiz C. (2009). The genetics of Parkinson's syndromes: a critical review. Curr. Opin. Genet. Dev. 19, 254– 265 10.1016/j.gde.2009.03.008 19419854 · DOI
- Haussecker D. Huang Y. Lau A. Parameswaran P. Fire A. Z. Kay M. A. (2010). Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA 16, 673– 695 10.1261/rna.2000810 20181738 PMC2844617 · DOI
- Hebert S. S. Horre K. Nicolai L. Papadopoulou A. S. Mandemakers W. Silahtaroglu A. N. (2008). Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proc. Natl. Acad. Sci. U.S.A. 105, 6415– 6420 10.1073/pnas.0710263105 18434550 PMC2359789 · DOI · Paper page
- Heyer M. P. Pani A. K. Smeyne R. J. Kenny P. J. Feng G. (2012). Normal midbrain dopaminergic neuron development and function in miR-133b mutant mice. J. Neurosci. 32, 10887– 10894 10.1523/JNEUROSCI.1732-12.2012 22875923 PMC3752074 · DOI
- Hwang D. Y. Ardayfio P. Kang U. J. Semina E. V. Kim K. S. (2003). Selective loss of dopaminergic neurons in the substantia nigra of Pitx3-deficient aphakia mice. Brain Res. Mol. Brain Res. 114, 123– 131 10.1016/S0169-328X(03)00162-1 12829322 · DOI
- Imarisio S. Carmichael J. Korolchuk V. Chen C. W. Saiki S. Rose C. (2008). Huntington's disease: from pathology and genetics to potential therapies. Biochem. J. 412, 191– 209 10.1042/BJ20071619 18466116 · DOI · Paper page
- Itoh N. Ohta H. (2013). Roles of FGF20 in dopaminergic neurons and Parkinson's disease. Front. Mol. Neurosci. 6: 15 10.3389/fnmol.2013.00015 23754977 PMC3668169 · DOI
- Jin J. Cheng Y. Zhang Y. Wood W. Peng Q. Hutchison E. (2012). Interrogation of brain miRNA and mRNA expression profiles reveals a molecular regulatory network that is perturbed by mutant huntingtin. J. Neurochem. 123, 477– 490 10.1111/j.1471-4159.2012.07925.x 22906125 PMC3472040 · DOI
- Johnson R. Zuccato C. Belyaev N. D. Guest D. J. Cattaneo E. Buckley N. J. (2008). A microRNA-based gene dysregulation pathway in Huntington's disease. Neurobiol. Dis. 29, 438– 445 10.1016/j.nbd.2007.11.001 18082412 · DOI
- Junn E. Lee K. W. Jeong B. S. Chan T. W. Im J. Y. Mouradian M. M. (2009). Repression of alpha-synuclein expression and toxicity by microRNA-7. Proc. Natl. Acad. Sci. U.S.A. 106, 13052– 13057 10.1073/pnas.0906277106 19628698 PMC2722353 · DOI · Paper page
- Kapranov P. St Laurent G. (2012). Dark matter RNA: existence, function, and controversy. Front. Genet. 3: 60 10.3389/fgene.2012.00060 22536205 PMC3332219 · DOI
- Kawahara Y. Mieda-Sato A. (2012). TDP-43 promotes microRNA biogenesis as a component of the Drosha and Dicer complexes. Proc. Natl. Acad. Sci. U.S.A. 109, 3347– 3352 10.1073/pnas.1112427109 22323604 PMC3295278 · DOI
- Khan A. A. Betel D. Miller M. L. Sander C. Leslie C. S. Marks D. S. (2009). Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs. Nat. Biotechnol. 27, 549– 555 10.1038/nbt.1543 19465925 PMC2782465 · DOI · Paper page
- Khoo S. K. Petillo D. Kang U. J. Resau J. H. Berryhill B. Linder J. (2012). Plasma-based circulating MicroRNA biomarkers for parkinson's disease. J. Parkinsons Dis. 2, 321– 331 10.3233/JPD-012144 23938262 · DOI
- Kim J. Inoue K. Ishii J. Vanti W. B. Voronov S. V. Murchison E. (2007). A MicroRNA feedback circuit in midbrain dopamine neurons. Science 317, 1220– 1224 10.1126/science.1140481 17761882 PMC2782470 · DOI · Paper page
- Kim Y. K. Kim V. N. (2007). Processing of intronic microRNAs. EMBO J. 26, 775– 783 10.1038/sj.emboj.7601512 17255951 PMC1794378 · DOI
- Koval E. D. Shaner C. Zhang P. du Maine X. Fischer K. Tay J. (2013). Method for widespread microRNA-155 inhibition prolongs survival in ALS-model mice. Hum. Mol. Genet. 22, 4127– 4135 10.1093/hmg/ddt261 23740943 PMC3781640 · DOI · Paper page
- Krek A. Grun D. Poy M. N. Wolf R. Rosenberg L. Epstein E. J. (2005). Combinatorial microRNA target predictions. Nat. Genet. 37, 495– 500 10.1038/ng1536 15806104 · DOI · Paper page
- Krol J. Busskamp V. Markiewicz I. Stadler M. B. Ribi S. Richter J. (2010a). Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs. Cell 141, 618– 631 10.1016/j.cell.2010.03.039 20478254 · DOI · Paper page
- Lagos-Quintana M. Rauhut R. Yalcin A. Meyer J. Lendeckel W. Tuschl T. (2002). Identification of tissue-specific microRNAs from mouse. Curr. Biol. 12, 735– 739 10.1016/S0960-9822(02)00809-6 12007417 · DOI · Paper page
- Lee S. T. Chu K. Im W. S. Yoon H. J. Im J. Y. Park J. E. (2011). Altered microRNA regulation in Huntington's disease models. Exp. Neurol. 227, 172– 179 10.1016/j.expneurol.2010.10.012 21035445 · DOI
- Lee Y. Jeon K. Lee J. T. Kim S. Kim V. N. (2002). MicroRNA maturation: stepwise processing and subcellular localization. EMBO J. 21, 4663– 4670 10.1093/emboj/cdf476 12198168 PMC126204 · DOI
- Lee Y. S. Shibata Y. Malhotra A. Dutta A. (2009). A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 23, 2639– 2649 10.1101/gad.1837609 19933153 PMC2779758 · DOI · Paper page
- Lehmann S. M. Kruger C. Park B. Derkow K. Rosenberger K. Baumgart J. (2012). An unconventional role for miRNA: let-7 activates Toll-like receptor 7 and causes neurodegeneration. Nat. Neurosci. 15, 827– 835 10.1038/nn.3113 22610069 · DOI · Paper page
- Lewis B. P. Burge C. B. Bartel D. P. (2005). Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120, 15– 20 10.1016/j.cell.2004.12.035 15652477 · DOI · Paper page
- Lewis B. P. Shih I. H. Jones-Rhoades M. W. Bartel D. P. Burge C. B. (2003). Prediction of mammalian microRNA targets. Cell 115, 787– 798 10.1016/S0092-8674(03)01018-3 14697198 · DOI · Paper page
- Li Y. Y. Cui J. G. Dua P. Pogue A. I. Bhattacharjee S. Lukiw W. J. (2011). Differential expression of miRNA-146a-regulated inflammatory genes in human primary neural, astroglial and microglial cells. Neurosci. Lett. 499, 109– 113 10.1016/j.neulet.2011.05.044 21640790 PMC3713470 · DOI
- Liang C. Zhu H. Xu Y. Huang L. Ma C. Deng W. (2012). MicroRNA-153 negatively regulates the expression of amyloid precursor protein and amyloid precursor-like protein 2. Brain Res. 1455, 103– 113 10.1016/j.brainres.2011.10.051 22510281 · DOI
- Lim L. P. Lau N. C. Garrett-Engele P. Grimson A. Schelter J. M. Castle J. (2005). Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433, 769– 773 10.1038/nature03315 15685193 · DOI · Paper page
- Ling S. Zhou J. Rudd J. A. Hu Z. Fang M. (2011). The recent updates of therapeutic approaches against abeta for the treatment of Alzheimer's disease. Anat. Rec. (Hoboken) 294, 1307– 1318 10.1002/ar.21425 21717585 · DOI
- Liu J. Carmell M. A. Rivas F. V. Marsden C. G. Thomson J. M. Song J. J. (2004). Argonaute2 is the catalytic engine of mammalian RNAi. Science 305, 1437– 1441 10.1126/science.1102513 15284456 · DOI · Paper page
- Liu N. Landreh M. Cao K. Abe M. Hendriks G. J. Kennerdell J. R. (2012). The microRNA miR-34 modulates ageing and neurodegeneration in Drosophila. Nature 482, 519– 523 10.1038/nature10810 22343898 PMC3326599 · DOI
- Liu Q. Xie F. Alvarado-Diaz A. Smith M. A. Moreira P. I. Zhu X. (2011). Neurofilamentopathy in neurodegenerative diseases. Open Neurol. J. 5, 58– 62 10.2174/1874205X01105010058 21915226 PMC3170930 · DOI
- Lukiw W. J. Zhao Y. Cui J. G. (2008). An NF-kappaB-sensitive micro RNA-146a-mediated inflammatory circuit in Alzheimer disease and in stressed human brain cells. J. Biol. Chem. 283, 31315– 31322 10.1074/jbc.M805371200 18801740 PMC2581572 · DOI · Paper page
- Margis R. Rieder C. R. (2011). Identification of blood microRNAs associated to Parkinson's disease. J. Biotechnol. 152, 96– 101 10.1016/j.jbiotec.2011.01.023 21295623 · DOI · Paper page
- Marti E. Pantano L. Banez-Coronel M. Llorens F. Minones-Moyano E. Porta S. (2010). A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing. Nucleic Acids Res. 38, 7219– 7235 10.1093/nar/gkq575 20591823 PMC2978354 · DOI
- Martins M. Rosa A. Guedes L. C. Fonseca B. V. Gotovac K. Violante S. (2011). Convergence of miRNA expression profiling, alpha-synuclein interacton and GWAS in Parkinson's disease. PLoS ONE 6: e25443 10.1371/journal.pone.0025443 22003392 PMC3189215 · DOI
- Mattick J. S. (2005). The functional genomics of noncoding RNA. Science 309, 1527– 1528 10.1126/science.1117806 16141063 · DOI
- McBride J. L. Boudreau R. L. Harper S. Q. Staber P. D. Monteys A. M. Martins I. (2008). Artificial miRNAs mitigate shRNA-mediated toxicity in the brain: implications for the therapeutic development of RNAi. Proc. Natl. Acad. Sci. U.S.A. 105, 5868– 5873 10.1073/pnas.0801775105 18398004 PMC2311380 · DOI
- McCarthy J. J. (2008). MicroRNA-206: the skeletal muscle-specific myomiR. Biochim. Biophys. Acta 1779, 682– 691 10.1016/j.bbagrm.2008.03.001 18381085 PMC2656394 · DOI
- Minones-Moyano E. Porta S. Escaramis G. Rabionet R. Iraola S. Kagerbauer B. (2011). MicroRNA profiling of Parkinson's disease brains identifies early downregulation of miR-34b/c which modulate mitochondrial function. Hum. Mol. Genet. 20, 3067– 3078 10.1093/hmg/ddr210 21558425 · DOI
- Miyoshi K. Miyoshi T. Siomi H. (2010). Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production. Mol. Genet. Genomics. 284, 95– 103 10.1007/s00438-010-0556-1 20596726 · DOI
- Morel L. Regan M. Higashimori H. Ng S. K. Esau C. Vidensky S. (2013). Neuronal exosomal miRNA-dependent translational regulation of astroglial glutamate transporter GLT1. J. Biol. Chem. 288, 7105– 7116 10.1074/jbc.M112.410944 23364798 PMC3591620 · DOI · Paper page
- Morlando M. Dini Modigliani S. Torrelli G. Rosa A. Di Carlo V. Caffarelli E. (2012). FUS stimulates microRNA biogenesis by facilitating co-transcriptional Drosha recruitment. EMBO J. 31, 4502– 4510 10.1038/emboj.2012.319 23232809 PMC3545295 · DOI
- Nana-Sinkam S. P. Croce C. M. (2013). Clinical applications for microRNAs in cancer. Clin. Pharmacol. Ther. 93, 98– 104 10.1038/clpt.2012.192 23212103 · DOI
- Nelson P. T. Wang W. X. (2010). MiR-107 is reduced in Alzheimer's disease brain neocortex: validation study. J. Alzheimers Dis. 21, 75– 79 10.3233/JAD-2010-091603 20413881 PMC2910235 · DOI · Paper page
- Nissan X. Blondel S. Navarro C. Maury Y. Denis C. Girard M. (2012). Unique preservation of neural cells in Hutchinson- Gilford progeria syndrome is due to the expression of the neural-specific miR-9 microRNA. Cell Rep. 2, 1– 9 10.1016/j.celrep.2012.05.015 22840390 · DOI
- Orom U. A. Nielsen F. C. Lund A. H. (2008). MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation. Mol. Cell 30, 460– 471 10.1016/j.molcel.2008.05.001 18498749 · DOI · Paper page
- Ozsolak F. Poling L. L. Wang Z. Liu H. Liu X. S. Roeder R. G. (2008). Chromatin structure analyses identify miRNA promoters. Genes Dev. 22, 3172– 3183 10.1101/gad.1706508 19056895 PMC2593607 · DOI
- Patel N. Hoang D. Miller N. Ansaloni S. Huang Q. Rogers J. T. (2008). MicroRNAs can regulate human APP levels. Mol. Neurodegener. 3: 10 10.1186/1750-1326-3-10 18684319 PMC2529281 · DOI
- Pratt A. J. MacRae I. J. (2009). The RNA-induced silencing complex: a versatile gene-silencing machine. J. Biol. Chem. 284, 17897– 17901 10.1074/jbc.R900012200 19342379 PMC2709356 · DOI
- Ramachandran V. Chen X. (2008). Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321, 1490– 1492 10.1126/science.1163728 18787168 PMC2570778 · DOI
- Raposo G. Stoorvogel W. (2013). Extracellular vesicles: exosomes, microvesicles, and friends. J. Cell Biol. 200, 373– 383 10.1083/jcb.201211138 23420871 PMC3575529 · DOI · Paper page
- Robberecht W. Philips T. (2013). The changing scene of amyotrophic lateral sclerosis. Nat. Rev. Neurosci. 14, 248– 264 10.1038/nrn3430 23463272 · DOI · Paper page
- Rodriguez A. Griffiths-Jones S. Ashurst J. L. Bradley A. (2004). Identification of mammalian microRNA host genes and transcription units. Genome Res. 14, 1902– 1910 10.1101/gr.2722704 15364901 PMC524413 · DOI · Paper page
- Ruby J. G. Jan C. H. Bartel D. P. (2007). Intronic microRNA precursors that bypass Drosha processing. Nature 448, 83– 86 10.1038/nature05983 17589500 PMC2475599 · DOI · Paper page
- Russell A. P. Wada S. Vergani L. Hock M. B. Lamon S. Leger B. (2012). Disruption of skeletal muscle mitochondrial network genes and miRNAs in amyotrophic lateral sclerosis. Neurobiol. Dis. 49C, 107– 117 10.1016/j.nbd.2012.08.015 22975021 · DOI
- Salmena L. Poliseno L. Tay Y. Kats L. Pandolfi P. P. (2011). A ceRNA hypothesis: the rosetta stone of a hidden RNA language. Cell 146, 353– 358 10.1016/j.cell.2011.07.014 21802130 PMC3235919 · DOI · Paper page
- Saraiya A. A. Wang C. C. (2008). snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog. 4: e1000224 10.1371/journal.ppat.1000224 19043559 PMC2583053 · DOI
- Saunders L. R. Sharma A. D. Tawney J. Nakagawa M. Okita K. Yamanaka S. (2010). miRNAs regulate SIRT1 expression during mouse embryonic stem cell differentiation and in adult mouse tissues. Aging (Albany NY) 2, 415– 431 20634564 PMC2933889
- Savas J. N. Makusky A. Ottosen S. Baillat D. Then F. Krainc D. (2008). Huntington's disease protein contributes to RNA-mediated gene silencing through association with Argonaute and P bodies. Proc. Natl. Acad. Sci. U.S.A. 105, 10820– 10825 10.1073/pnas.0800658105 18669659 PMC2504805 · DOI
- Schipper H. M. Maes O. C. Chertkow H. M. Wang E. (2007). MicroRNA expression in Alzheimer blood mononuclear cells. Gene Regul. Syst. Biol. 1, 263– 274 19936094 PMC2759133
- Schmitt I. Wullner U. van Rooyen J. P. Khazneh H. Becker J. Volk A. (2012). Variants in the 3'UTR of SNCA do not affect miRNA-433 binding and alpha-synuclein expression. Eur. J. Hum. Genet. 20, 1265– 1269 10.1038/ejhg.2012.84 22617348 PMC3499742 · DOI
- Schonrock N. Gotz J. (2012). Decoding the non-coding RNAs in Alzheimer's disease. Cell. Mol. Life Sci. 69, 3543– 3559 10.1007/s00018-012-1125-z 22955374 PMC11114718 · DOI
- Schonrock N. Humphreys D. T. Preiss T. Gotz J. (2012). Target gene repression mediated by miRNAs miR-181c and miR-9 both of which are down-regulated by amyloid-beta. J. Mol. Neurosci. 46, 324– 335 10.1007/s12031-011-9587-2 21720722 · DOI
- Schonrock N. Ke Y. D. Humphreys D. Staufenbiel M. Ittner L. M. Preiss T. (2010). Neuronal microRNA deregulation in response to Alzheimer's disease amyloid-beta. PLoS ONE 5: e11070 10.1371/journal.pone.0011070 20552018 PMC2884018 · DOI · Paper page
- Seredenina T. Luthi-Carter R. (2012). What have we learned from gene expression profiles in Huntington's disease. Neurobiol. Dis. 45, 83– 98 10.1016/j.nbd.2011.07.001 21820514 · DOI
- Sethi P. Lukiw W. J. (2009). Micro-RNA abundance and stability in human brain: specific alterations in Alzheimer's disease temporal lobe neocortex. Neurosci. Lett. 459, 100– 104 10.1016/j.neulet.2009.04.052 19406203 · DOI · Paper page
- Shaked I. Meerson A. Wolf Y. Avni R. Greenberg D. Gilboa-Geffen A. (2009). MicroRNA-132 potentiates cholinergic anti-inflammatory signaling by targeting acetylcholinesterase. Immunity 31, 965– 973 10.1016/j.immuni.2009.09.019 20005135 · DOI
- Shi M. Caudle W. M. Zhang J. (2009). Biomarker discovery in neurodegenerative diseases: a proteomic approach. Neurobiol. Dis. 35, 157– 164 10.1016/j.nbd.2008.09.004 18938247 PMC2939006 · DOI
- Shioya M. Obayashi S. Tabunoki H. Arima K. Saito Y. Ishida T. (2010). Aberrant microRNA expression in the brains of neurodegenerative diseases: miR-29a decreased in Alzheimer disease brains targets neurone navigator 3. Neuropathol. Appl. Neurobiol. 36, 320– 330 10.1111/j.1365-2990.2010.01076.x 20202123 · DOI
- Sibley C. R. Seow Y. Curtis H. Weinberg M. S. Wood M. J. (2012). Silencing of Parkinson's disease-associated genes with artificial mirtron mimics of miR-1224. Nucleic Acids Res. 40, 9863– 9875 10.1093/nar/gks712 22848108 PMC3479180 · DOI
- Sinha M. Ghose J. Bhattarcharyya N. P. (2011). Micro RNA -214, -150, -146a and-125b target Huntingtin gene. RNA Biol. 8, 1005– 1021 10.4161/rna.8.6.16035 22048026 · DOI
- Sinha M. Ghose J. Das E. Bhattarcharyya N. P. (2010). Altered microRNAs in STHdh(Q111)/Hdh(Q111) cells: miR-146a targets TBP. Biochem. Biophys. Res. Commun. 396, 742– 747 10.1016/j.bbrc.2010.05.007 20451497 · DOI
- Smith P. Al Hashimi A. Girard J. Delay C. Hebert S. S. (2011). In vivo regulation of amyloid precursor protein neuronal splicing by microRNAs. J. Neurochem. 116, 240– 247 10.1111/j.1471-4159.2010.07097.x 21062284 · DOI
- Soreq H. Wolf Y. (2011). NeurimmiRs: microRNAs in the neuroimmune interface. Trends Mol. Med. 17, 548– 555 10.1016/j.molmed.2011.06.009 21813326 · DOI
- Soreq L. Salomonis N. Bronstein M. Greenberg D. S. Israel Z. Bergman H. (2013). Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes. Front. Mol. Neurosci. 6: 10 10.3389/fnmol.2013.00010 23717260 PMC3652308 · DOI
- Sotiriou S. Gibney G. Baxevanis A. D. Nussbaum R. L. (2009). A single nucleotide polymorphism in the 3'UTR of the SNCA gene encoding alpha-synuclein is a new potential susceptibility locus for Parkinson disease. Neurosci. Lett. 461, 196– 201 10.1016/j.neulet.2009.06.034 19540308 PMC2728557 · DOI
- Tang G. Tang X. Mendu V. Jia X. Chen Q. J. He L. (2008). The art of microRNA: various strategies leading to gene silencing via an ancient pathway. Biochim. Biophys. Acta 1779, 655– 662 10.1016/j.bbagrm.2008.06.006 18620087 · DOI
- Tanzi R. E. (2012). The genetics of Alzheimer disease. Cold Spring Harb. Perspect. Med. 2, 6296– 6306 10.1101/cshperspect.a006296 23028126 PMC3475404 · DOI · Paper page
- Vasudevan S. Tong Y. Steitz J. A. (2007). Switching from repression to activation: microRNAs can up-regulate translation. Science 318, 1931– 1934 10.1126/science.1149460 18048652 · DOI
- Villa C. Ridolfi E. Fenoglio C. Ghezzi L. Vimercati R. Clerici F. (2013). Expression of the transcription factor Sp1 and its regulatory hsa-miR-29b in peripheral blood mononuclear cells from patients with Alzheimer's disease. J. Alzheimers Dis. 35, 487– 494 10.3233/JAD-122263 23435408 · DOI
- Wanet A. Tacheny A. Arnould T. Renard P. (2012). miR-212/132 expression and functions: within and beyond the neuronal compartment. Nucleic Acids Res. 40, 4742– 4753 10.1093/nar/gks151 22362752 PMC3367188 · DOI
- Wang G. van der Walt J. M. Mayhew G. Li Y. J. Zuchner S. Scott W. K. (2008a). Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. Am. J. Hum. Genet. 82, 283– 289 10.1016/j.ajhg.2007.09.021 18252210 PMC2427225 · DOI
- Wang W. X. Rajeev B. W. Stromberg A. J. Ren N. Tang G. Huang Q. (2008b). The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. J. Neurosci. 28, 1213– 1223 10.1523/JNEUROSCI.5065-07.2008 18234899 PMC2837363 · DOI
- Wang L. L. Huang Y. Wang G. Chen S. D. (2012). The potential role of microRNA-146 in Alzheimer's disease: biomarker or therapeutic target. Med. Hypotheses 78, 398– 401 10.1016/j.mehy.2011.11.019 22209051 · DOI
- Wang W. X. Huang Q. Hu Y. Stromberg A. J. Nelson P. T. (2011). Patterns of microRNA expression in normal and early Alzheimer's disease human temporal cortex: white matter versus gray matter. Acta Neuropathol. 121, 193– 205 10.1007/s00401-010-0756-0 20936480 PMC3073518 · DOI · Paper page
- Williams A. H. Valdez G. Moresi V. Qi X. McAnally J. Elliott J. L. (2009). MicroRNA-206 delays ALS progression and promotes regeneration of neuromuscular synapses in mice. Science 326, 1549– 1554 10.1126/science.1181046 20007902 PMC2796560 · DOI
- Winslow A. R. Rubinsztein D. C. (2011). The Parkinson disease protein alpha-synuclein inhibits autophagy. Autophagy 7, 429– 431 10.4161/auto.7.4.14393 21157184 PMC3127221 · DOI
- Wong H. K. Veremeyko T. Patel N. Lemere C. A. Walsh D. M. Esau C. (2013). De-repression of FOXO3a death axis by microRNA-132 and -212 causes neuronal apoptosis in Alzheimer's disease. Hum. Mol. Genet. 22, 3077– 3092 10.1093/hmg/ddt164 23585551 PMC13387022 · DOI
- Zhou X. Ruan J. Wang G. Zhang W. (2007). Characterization and identification of microRNA core promoters in four model species. PLoS Comput. Biol. 3: e37 10.1371/journal.pcbi.0030037 17352530 PMC1817659 · DOI
- Zong Y. Wang H. Dong W. Quan X. Zhu H. Xu Y. (2011). miR-29c regulates BACE1 protein expression. Brain Res. 1395, 108– 115 10.1016/j.brainres.2011.04.035 21565331 · DOI · Paper page
- Zuccato C. Belyaev N. Conforti P. Ooi L. Tartari M. Papadimou E. (2007). Widespread disruption of repressor element-1 silencing transcription factor/neuron-restrictive silencer factor occupancy at its target genes in Huntington's disease. J. Neurosci. 27, 6972– 6983 10.1523/JNEUROSCI.4278-06.2007 17596446 PMC6672230 · DOI · Paper page
- Zuccato C. Valenza M. Cattaneo E. (2010). Molecular mechanisms and potential therapeutical targets in Huntington's disease. Physiol. Rev. 90, 905– 981 10.1152/physrev.00041.2009 20664076 · DOI · Paper page
- Authors
- Goodall, E. F., Heath, P. R., Bandmann, O., Kirby, J., & Shaw, P. J.
- Affiliations
- University of Sheffield (GB)
- Venue
- Frontiers in Cellular Neuroscience
- Publisher
- Frontiers Media SA
- Published
- 2013
- Volume
- 7
- Pages
- 178-178
- ISSN
- 1662-5102 (ISSN-L)
- PMC
- PMC3794211
- OpenAlex
- W2033797433
- Cited by
- 187
- References
- 161
- Citations by year
- 2026: 3 · 2025: 5 · 2024: 10 · 2023: 9 · 2022: 6 · 2021: 16 · 2020: 13 · 2019: 17 · 2018: 23 · 2017: 18 · 2016: 24 · 2015: 23 · 2014: 19
- FWCI
- 1.82
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- Frontiers in Cellular Neuroscience (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- White Rose Research Online (University of Leeds, The University of Sheffield, University of York) (acceptedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Alzheimer's Research Trust
- National Institute for Health and Care Research (NF-SI-0512-10082)
- Parkinson's UK (G‐1202)
- Motor Neurone Disease Association (Goodall/Oct10/6066)
- European Commission (259867)
- Directorate for Biological Sciences
- Medical Research Council (MR/K000039/1)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Health Sciences › Medicine › Neurology › Amyotrophic Lateral Sclerosis Research
- Keywords
- microRNA, neurodegeneration, Alzheimer's disease, Parkinson's disease, amyotrophic lateral sclerosis, Huntington's disease, microRNA biogenesis, gene regulatory networks, non-coding RNA, biomarkers, miRNA-based therapy
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