Cited by 0Alzheimer's disease research and treatmentsDementia and Cognitive Impairment ResearchAdvanced Neuroimaging Techniques and Applications

Multimodal MRI combined with RNA sequencing reveals pathological signatures in the 9-month-old 3×Tg-AD mouse brain

Open access
Li, Yongxin, Tang, Ziling, Yao, Maohua, Ran, Yun, Qiu, Zuocheng·2026·Neural Regeneration Research

Abstract

The triple transgenic mouse model of Alzheimer’s disease (3×Tg-AD) is a widely used model that exhibits region-dependent patterns of progressive amyloid-β and tau pathology. Although structural brain abnormalities on magnetic resonance imaging have been observed in 3×Tg-AD mice at later disease stages (> 12 months) and as early as 2 months, few studies have investigated changes in these mice during the stage with extensive amyloid-β deposition and onset of tau pathology (around 9 months). This study aimed to assess brain morphometry and microstructure alterations in 9 month-old 3×Tg-AD mice to better understand the neural mechanisms underlying these specific pathological features. Voxel-based analyses were employed on T2-weighted and diffusion tensor imaging to identify differences between 3×Tg-AD and control mice. Compared with controls, 3×Tg-AD mice exhibited lower gray matter volume in several regions including both hippocampal regions, the right thalamus, the left caudoputamen, and the cortex. Reduced white matter volume was observed in fiber tracts including the corpus callosum, internal capsule, stria terminalis, and olfactory tract. Whole-brain diffusion tensor imaging analysis revealed a significant decrease in fractional anisotropy and an increase in both radial and mean diffusivity within the left dentate gyrus of the hippocampal region and right striatumlike amygdala nuclei, with no significant difference in axial diffusivity. Correlation analyses demonstrated significant associations between behavioral performance measures, with both gray and white matter volumes within regions showing significant morphometric differences. Notably, behavioral performance also exhibited significant correlations with diffusion tensor imaging measures particularly within the left dentate gyrus of the hippocampal region and right striatumlike amygdala nuclei. Immunofluorescence analysis confirmed increased amyloid-β plaques and p-Tau protein expression in the hippocampal regions of 3×Tg- AD mice, which corroborated the magnetic resonance imaging findings. Transcriptome analysis in hippocampus tissue identified 1389 differentially expressed genes. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses revealed that numerous differentially expressed genes were enriched in biological processes relevant to synapse structure, cognition, learning, and memory, with particular emphasis on Wnt and mitogen-activated protein kinase signaling pathways. Collectively, these findings suggest that intricate anatomical and microstructural alterations occur in 3×Tg-AD model mice at the onset of pathology around 9 months, potentially driven by gene expression alterations. Moreover, our results support the potential utility of brain volume and diffusion metrics as biomarkers for Alzheimer’s disease pathology, which could have significant implications for clinical diagnosis of AD patients.

AI snapshot

Written from the paper’s full text.

TL;DR

In 9-month-old male 3×Tg-AD mice, multimodal MRI detected lower gray/white matter volumes and altered diffusion metrics in memory-related regions, alongside behavioral impairment and hippocampal Aβ/tau pathology. Hippocampal RNA-seq identified 1,389 differentially expressed genes enriched in synapse, cognition/memory, and myelination-related Wnt/MAPK pathways, linking imaging changes to molecular signatures.

Key findings

Behavioral testing showed 3×Tg-AD mice had lower Y-maze spontaneous alternation (55.5% vs. 70.9%; P < 0.01), longer Morris water maze day-6 escape latency (51.3 vs. 25.4 seconds; P < 0.01), fewer platform crossings (0.4 vs. 1.7; P < 0.01), less target-quadrant time (24.3% vs. 36.9%; P < 0.05), and longer latency to cross the platform (52.9 vs. 27.5 seconds; P < 0.01), with no significant open-field differences.

  • Voxel-based morphometry found lower gray matter volume in regions including bilateral hippocampi, right retrohippocampal region, right subparafascicular thalamus, bilateral primary somatosensory area, left caudoputamen, left primary motor area, right anterolateral visual area, anterior cingulate area, and olfactory bulb; lower white matter volume was found in the corpus callosum body, bilateral stria terminalis, left internal capsule, habenular commissure, olfactory nerve layer, and ventral tegmental decussation (P < 0.05 with family-wise error correction).
  • DTI showed lower fractional anisotropy in bilateral hypothalamus, bilateral retrosplenial area, left caudoputamen, left dentate gyrus of the hippocampal region, right dorsal thalamus, and right striatum-like amygdala nuclei (P < 0.005); mean diffusivity and radial diffusivity were higher in left DG_HIP and right sAMY, while axial diffusivity showed no significant changes.
  • Hippocampal RNA-seq found 1,389 DEGs (774 up-regulated, 615 down-regulated); GO terms were enriched for synapse structure/function, cognition, learning, and memory, and KEGG analysis identified 20 pathways including Wnt and MAPK signaling. Immunofluorescence showed more hippocampal Aβ plaques and higher p-Tau (Ser404) in the AD group (P < 0.01), and MRI indices correlated with Y-maze and Morris water maze performance.

Methods

Male 3×Tg-AD mice and wild-type non-transgenic controls (n = 9 per group) underwent behavioral testing at approximately 9 months of age (open field, Y-maze, Morris water maze), followed by in vivo 9.4 T MRI.

  • T2-weighted images were analyzed with VBM (SPM8/VBM8, DARTEL, SPMmouse template) for gray and white matter volumes; DTI data were processed with FSL to derive FA, AxD, MD, and RD, with voxel-wise two-sample t-tests (GM/WM P < 0.05 FWE; FA/diffusivity P < 0.005).
  • Immunofluorescence for Aβ (6E10) and p-Tau (Ser404) used n = 3 per group; bulk RNA-seq of hippocampal tissue used n = 3 per group, with DESeq2 for DEGs (P < 0.05), GO/KEGG enrichment, and Pearson correlations between imaging metrics and behavior.

Limitations

Stated by the paper: the study focused only on male 3×Tg-AD mice at 9 months, limiting generalizability; the small number of mice reduced statistical power; DTI sequence parameters were suboptimal and DTI analysis could not achieve family-wise error correction; and DTI has technical limitations for describing complex gray matter geometry and white matter microstructural change.

  • Evident from the text: the design is cross-sectional, so it cannot establish causality or temporal progression; RNA-seq and immunofluorescence analyses used only n = 3 per group; findings may not extend to female mice or other ages.

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Integrity signals

Registry

Crossref · 10.4103/nrr.nrr-d-25-00006

Cites

80 of 82 references verified0 citation errors · 2 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

52 of 72 cited sources checked · 16 supported · 3 flagged · accuracy not yet measured

  • Premisecitation

    The 3×Tg-AD model exhibits both amyloid-beta accumulation and neurofibrillary tangles following a temporal and spatial pattern similar to that observed in human Alzheimer's disease.

    “This model exhibits both Aβ accumulation and neurofibrillary tangles following a temporal and spatial pattern similar to that observed in human AD (Bloom, 2014; Belfiore et al., 2019).”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites Bloom, 2014 source

      The Abstract describes amyloid plaques and neurofibrillary tangles as features of human Alzheimer disease. The ‘In Vivo Evidence for Tau-Dependent Aβ Toxicity’ section describes both pathologies in transgenic mouse hybrids, but identifies those models as tauP301L/APPSwe or PS19/PDAPP—not 3×Tg-AD—and does not say their temporal and spatial pattern resembles that in humans. Page numbers are unavailable in our copy. (LLM, conf=0.84)

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    • cites Belfiore et al., 2019 source
  • Interpretationcitation

    The inconsistent findings among DTI studies suggest that age-related diffusion metrics changes in the 3×Tg-AD mouse model are complex.

    “The inconsistent findings among these DTI studies suggest that age-related diffusion metrics changes in the 3×Tg-AD mouse model are complex (Nie et al., 2019).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Nie et al., 2019 source

      The Discussion describes conflicting diffusion-metric findings across studies and notes that methodological differences make direct comparison difficult. It also says there was only one prior dMRI study of white matter in 3xTg-AD mice, and that study did not report age-related trajectories. Thus, the paper supports complexity in interpreting the changes, but not inconsistent age-related findings among multiple DTI studies of this specific model. (LLM, conf=0.85)

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  • Premisecitation

    Brain-wide volume measurements have yielded inconsistent results in the 3×Tg-AD model, with some studies reporting volumetric changes and others finding no significant differences.

    “Although most studies have reported volumetric changes throughout various brain regions over time (including both decreases and increases) (Kong et al., 2018; Chiquita et al., 2019; Rollins et al., 2019; Güell-Bosch et al., 2020), others have found no significant differences in brain volume between 3×Tg-AD mice and controls (Kastyak-Ibrahim et al., 2013; Wu et al., 2015; Montoliu-Gaya et al., 2018”
    Quote in the paperNot a substantial claim2 of 3 sources checked
    • cites Kong et al., 2018 source
    • cites Chiquita et al., 2019 source
    • cites Rollins et al., 2019 source
  • Interpretationcitation

    Abnormal structural pathways in AD may be the combined outcome of axon loss or myelin breakdown.

    “These findings suggest that abnormal structural pathways in AD may be the combined outcome of axon loss or myelin breakdown (Dong et al., 2018).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Dong et al., 2018 source
  • Interpretationcitation

    The reduced integrity observed at this stage may reflect specific pathology patterns characterized by extensive intracellular Aβ aggregates and emerging extracellular Aβ and tau immunoreactivity.

    “The reduced integrity observed at this stage may reflect specific pathology patterns characterized by extensive intracellular Aβ aggregates and emerging extracellular Aβ and tau immunoreactivity (Falangola et al., 2022).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Falangola et al., 2022 source

      The Results and Discussion (page unavailable) link diffusion-MRI changes in older 3xTg-AD mice to Aβ and tau pathology, and report Aβ and tau immunoreactivity. But the paper describes extracellular Aβ plaques and intracellular tau in 15-month-old mice; it does not characterize this stage by extensive intracellular Aβ aggregates or emerging extracellular Aβ and tau immunoreactivity. (LLM, conf=0.84)

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  • Classified as probably not a substantial claim. 40
  • May combine two claims. 24
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Cognitive impairment manifests at the age of 3 to 4 months in the 3×Tg-AD model.

    “Cognitive impairment manifests at the age of 3 to 4 months.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Belfiore et al., 2019 source

      The Abstract says cognitive decline in the female 3xTg-AD mice studied was first apparent at 6 months, not 3–4 months. The Results section, “Learning and memory impairments in 3xTg-AD mice” (page unavailable), reports significant deficits at 6 months; the study tested mice at 2 and 6 months but not at 3–4 months. (LLM, conf=0.88)

      Checked by a reasoning model — may be wrong.

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  • May combine two claims.

    Premisecitation

    Within the hippocampus, significant changes of diffusion metrics (FA, MD, AxD, and RD) were observed in 3×Tg-AD mice compared with controls, with decreased FA and AxD at both 2 and 8 months, and increased RD at 12 and 14 months.

    “Within the hippocampus, significant changes of diffusion metrics (FA, MD, AxD, and RD) were observed in 3×Tg-AD mice compared with controls, with decreased FA and AxD at both 2 and 8 months (Falangola et al., 2021), and increased RD at 12 and 14 months (Snow et al., 2017).”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites Falangola et al., 2021 source

      The Results (Group analysis; page unavailable) confirm significant hippocampal diffusion-metric differences at 2 and 8 months. But the Discussion (page unavailable) says all hippocampal diffusion-tensor metrics, including axial diffusivity, were significantly higher—not decreased—in 2-month-old 3xTg-AD mice. The 12- and 14-month RD finding is attributed to Snow et al., not this source. (LLM, conf=0.86)

      Checked by a reasoning model — may be wrong.

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    • cites Snow et al., 2017 source

      The Snow citation is attached to the increased-RD finding. In the DTI measures and Discussion sections (pages unavailable), the paper reports a significant RadD increase in the slice containing the hippocampus, but explicitly says there was no difference within the hippocampal region itself. Its results group mice aged 12–14 months rather than reporting separate findings at 12 and 14 months. (LLM, conf=0.88)

      Checked by a reasoning model — may be wrong.

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  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    In the 3×Tg-AD model, intraneuronal amyloid-beta begins accumulating around 2 months of age while extracellular amyloid-beta deposits become apparent at 6 months.

    “intraneuronal Aβ begins accumulating around 2 months of age while extracellular Aβ deposits become apparent at 6 months.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Belfiore et al., 2019 source

      The Results section on age-dependent plaque accumulation (page unavailable) reports that extracellular Aβ plaques were absent at 2 months and first detected in the hippocampus at 6 months. It does not establish that intraneuronal Aβ begins accumulating around 2 months; a search for “intraneuronal” found no passage reporting that onset. (LLM, conf=0.87)

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  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Age-related brain atrophy and myelin loss are observed on advanced high-field MRI in the 3×Tg-AD model.

    “Alongside the progression of AD pathology, age-related brain atrophy and myelin loss are observed on advanced high-field MRI (Ni, 2021; Jullienne et al., 2022; Bergamino et al., 2023).”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites Ni, 2021

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites Jullienne et al., 2022 source

      Section 4.2.1 reports MRI-observed cortical atrophy in 18-month-old 3xTg-AD mice, and the Summary describes volumetric declines with increasing age. But section 4.2.4 reports no changes in myelin staining in mice aged 11–17 months; it does not support the claimed myelin loss. The supplied passages do not establish that these findings were observed specifically on high-field MRI (page numbers unavailable). (LLM, conf=0.87)

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    • cites Bergamino et al., 2023 source
  • Classified as probably not a substantial claim.

    Premisecitation

    The 3×Tg-AD mouse model possesses three gene mutations associated with human familial Alzheimer's disease: human presenilin-1 M146V, human amyloid precursor protein Swedish, and human tau protein P301L.

    “One commonly used animal model of AD is the triple transgenic mouse model (3×Tg-AD), which possesses three gene mutations associated with human familial AD: the human presenilin-1 M146V mutation, human amyloid precursor protein Swedish mutation, and human tau protein P301L mutation (Chen et al., 2023; Li et al., 2025).”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites Chen et al., 2023 source

      The discussion of the 3xTg model (p. 16) identifies the APP Swedish and PS1M146V mutations and the MAPTP301L tau transgene, supporting the list of three changes. It does not state that all three are human mutations associated with familial Alzheimer’s disease. (LLM, conf=0.83)

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    • cites Li et al., 2025

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    By 12 months of age, amyloid-beta deposits have spread extensively from the caudal hippocampus to other regions in the 3×Tg-AD model.

    “By 12 months of age, Aβ deposits have spread extensively from the caudal hippocampus to other regions (Belfiore et al., 2019).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Belfiore et al., 2019 source

      The Results section (page unavailable) reports plaques first in the caudal hippocampus, in all three hippocampal regions by 12 months, and first detectable in several cortical regions at 12 months. Calling the spread “extensive” by that age overstates the finding: the paper says plaques were present throughout the cortex at 20 months. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    In the 3×Tg-AD model, tau pathology becomes detectable around 6 months of age, and neurofibrillary tangles appear after 12 months.

    “Tau pathology becomes detectable around 6 months of age, and neurofibrillary tangles appear after 12 months (Belfiore et al., 2019).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Belfiore et al., 2019 source

      The Results section reports detectable tau phosphorylation in the hippocampus of female 3xTg-AD mice at 6 months. It does not establish that neurofibrillary tangles first appear after 12 months; the age-related findings concern phosphorylated-tau immunoreactivity, not tangle formation (page not provided). (LLM, conf=0.86)

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  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Similar DTI changes have been reported in other regions such as the fimbria, basal forebrain, external capsule, and internal capsule, characterized by decreased fractional anisotropy and axial diffusion and increased radial diffusion.

    “Similar DTI changes have also been reported in other regions such as the fimbria, basal forebrain, external capsule, and internal capsule, characterized by decreased fractional anisotropy (FA) and axial diffusion (AxD) and increased radial diffusion (RD) (Falangola et al., 2020; Falangola et al., 2021; Ni, 2021; Bergamino et al., 2023).”
    Quote in the paperNot a substantial claim2 of 3 sources checked
    • cites Falangola et al., 2020 source

      The Results (page unavailable) report decreased FA and increased radial diffusivity in the fimbria of 2-month-old 3×Tg-AD mice. They report decreased axial diffusivity in the corpus callosum, not the fimbria, and only kurtosis-metric decreases in the internal and external capsules. The reported results do not address the basal forebrain, so this source does not support the claimed pattern across all four named regions. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
    • cites Falangola et al., 2021 source

      The Results (Group analysis; page unavailable) report lower fractional anisotropy and higher radial diffusivity in the fimbria of 3xTg-AD mice, but do not report lower axial diffusivity there. The Abstract (page unavailable) reports age-related decreases in fractional anisotropy and axial diffusivity in the basal forebrain, but an increase in radial kurtosis, not radial diffusivity. The Methods (DKI post-processing and Image analysis; page unavailable) list the studied regions as basal forebrain, hippocampus, fimbria, and fornix—not the external or internal capsule. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites Ni, 2021

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Alzheimer's disease is characterized by neuritic plaques and neurofibrillary tangles resulting from amyloid-beta accumulation, aggregation of fibrillar plaques, and hyperphosphorylation of tau protein.

    “Previous studies of AD pathology have demonstrated that the disease is characterized by the presence of neuritic plaques and neurofibrillary tangles resulting from amyloid-beta (Aβ) accumulation, aggregation of fibrillar plaques, and hyperphosphorylation of tau protein (Depp et al., 2023; Zhang et al., 2023; Kovacs et al., 2024; Wang et al., 2024; Zhang et al., 2025).”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites Depp et al., 2023 source

      The Main section states that AD pathology is characterized by Aβ plaques and neurofibrillary tangles, and the paper discusses increased amyloid deposition. It does not establish the sentence’s more specific description of neuritic and fibrillar plaques or explain the tangles through tau hyperphosphorylation. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites Zhang et al., 2023 source

      The Introduction describes extracellular amyloid-β plaques and intracellular tau tangles as hallmark pathologies of Alzheimer’s disease. It does not specify that the plaques are neuritic or fibrillar, or explain the tangles through tau hyperphosphorylation. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites Kovacs et al., 2024 source

      The Introduction (page unavailable) says AD neuropathologic change is classically characterized by amyloid-β and tau pathologies, including neurofibrillary tangles; the Discussion also mentions neuritic plaques. The paper does not establish the claim’s more specific account of fibrillar-plaque aggregation and tau hyperphosphorylation producing those lesions, and it describes cases with extensive amyloid deposition but little tau pathology. (LLM, conf=0.84)

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    Study design and conductcitation

    Sample sizes were not predetermined using statistical methods, but were similar to those reported in previous publications.

    “Sample sizes were not predetermined using statistical methods; however, our sample sizes are similar to those reported in previous publications (Manno et al., 2019; Rollins et al., 2019; Güell-Bosch et al., 2020).”
    Quote in the paperNot a substantial claim2 of 3 sources checked
    • cites Manno et al., 2019 source
    • cites Rollins et al., 2019 source
    • cites Güell-Bosch et al., 2020 source
  • Classified as probably not a substantial claim.

    Study design and conductcitation

    To avoid confounding effects of fluctuating ovarian hormones in females, only male mice were used.

    “To avoid the confounding effects of fluctuating ovarian hormones in females (Beery and Zucker, 2011), nine male 3×Tg-AD mice on a C57BL/6J-congenic background (approximately 7 months old) and nine control mice weighing approximately 25 to 30 g were procured from Wuhan Youdu Biotechnology Company (Wuhan, China; license no. SCXK (E) 2021-0025).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Beery and Zucker, 2011 source

      The Introduction describes concern that hormonal cycles can confound experiments, so the cited paper supports the existence of that concern. But the Recommendations say female rodents can be studied without estrous-cycle confounding through appropriate study design; the paper does not support using males only as a necessary way to avoid it. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    In a previous study of 3×Tg-AD mice, wider transcriptional changes triggered by abnormal amyloid-beta and neurofibrillary tangle deposition occurred well before behavioral decline.

    “wider transcriptional changes triggered by the abnormal deposition of Aβ and neurofibrillary tangles occurred well before behavioral decline”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Yin et al., 2020 source
  • May combine two claims.

    Premisecitation

    At around 9 months in the 3×Tg-AD model, neuroinflammation becomes evident and amyloid-beta deposition shifts from intraneuronal to extracellular.

    “It is at this specific stage that neuroinflammation becomes evident and Aβ deposition shifts from intraneuronal to extracellular (Belfiore et al., 2019).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Belfiore et al., 2019 source

      The Results sections on microgliosis and Aβ plaques report that microglial activation and extracellular plaques were first detected at 6 months in female 3xTg-AD mice, supporting the general progression described. The paper does not establish a shift from intraneuronal to extracellular deposition at around 9 months; it did not assess a 9-month group. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    DTI is a powerful noninvasive method widely used for detecting brain microstructural abnormalities associated with Alzheimer's disease.

    “DTI is a powerful noninvasive method widely used for detecting brain microstructural abnormalities associated with AD (Kantarci et al., 2017; Falangola et al., 2020; Bergamino et al., 2023).”
    Quote in the paperSubstantial claim2 of 3 sources checked
    • cites Kantarci et al., 2017 source
    • cites Falangola et al., 2020 source

      The Introduction describes diffusion MRI (dMRI) as a powerful, widely used noninvasive tool for detecting AD-associated white-matter changes. It identifies DTI as one dMRI technique, but the broad statement is about dMRI, not DTI specifically; the study primarily uses DKI and diffusion-tensor measures. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites Bergamino et al., 2023 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Prior research has demonstrated that gene expression distribution can be mapped onto functional MRI.

    “Prior research has demonstrated that gene expression distribution can be mapped onto functional MRI (Lachmann et al., 2018).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Lachmann et al., 2018 source

      The Discussion (page unavailable) says the resource calculates gene-expression distributions across tissues and cell lines. Our copy does not say those distributions were mapped onto functional MRI; searches for fMRI and functional magnetic resonance imaging found no passage addressing that link. (LLM, conf=0.76)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    In that previous study, genes specifically associated with abnormal amyloid-beta protein deposition and cognitive decline were identified.

    “genes specifically associated with abnormal Aβ protein deposition and cognitive decline were identified (Yin et al., 2020).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Yin et al., 2020 source
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    RNA sequencing is an effective method for serial analysis of gene expression, which aids in understanding regulation mechanisms.

    “RNA sequencing (RNA-seq) is an effective method for serial analysis of gene expression, which aids in understanding regulation mechanisms (Lachmann et al., 2018).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Lachmann et al., 2018 source

      The Introduction (page unavailable) describes RNA-seq as a common, sensitive method for quantifying gene expression. The Results section on predicting biological functions and protein interactions (page unavailable) uses expression data to predict upstream regulatory transcription factors, supporting a link to studying regulation. The paper does not describe serial or longitudinal analysis of gene expression. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
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    Premisecitation

    At the preclinical stage of AD, parahippocampal gyrus atrophy has been detected in patients with mild cognitive impairment.

    “At the preclinical stage of AD, parahippocampal gyrus atrophy has also been detected in patients with mild cognitive impairment (Huang et al., 2023).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Huang et al., 2023 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A previous study in a mouse model of AD reported lower volumes in the right stria terminalis at 6 months of age.

    “A previous study in a mouse model of AD reported lower volumes in the right stria terminalis at 6 months of age (Rollins et al., 2019).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Rollins et al., 2019 source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    AD is characterized by progressive memory loss and cognitive dysfunction, and age-dependent decline in neurogenesis may compromise the structure and function of the hippocampus over time, leading to susceptibility to memory impairment.

    “AD is characterized by progressive memory loss and cognitive dysfunction, and age-dependent decline in neurogenesis may compromise the structure and function of the hippocampus over time, leading to susceptibility to memory impairment (Hollands et al., 2016).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Hollands et al., 2016 source
    • Rests on an assumption: The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Longitudinal studies have revealed significant changes in brain volumes (both increases and decreases) in 3×Tg-AD mice during the early stages from 1.5 months to 6 months of age.

    “Longitudinal studies have revealed significant changes in brain volumes (both increases and decreases) in 3×Tg-AD mice during the early stages from 1.5 months to 6 months of age (Kong et al., 2018; Rollins et al., 2019).”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites Kong et al., 2018 source
    • cites Rollins et al., 2019 source

      The Results (Fig. 5) report significant increases and decreases in local brain volume in 3xTg-AD mice over time. However, Magnetic resonance image acquisition specifies measurements at 8, 16, and 24 weeks of age—approximately 2 to 6 months—not from 1.5 months. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
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    Premisecitation

    Previous DTI studies have demonstrated WM integrity impairment in various types of AD mouse models.

    “Previous DTI studies have demonstrated WM integrity impairment in various types of AD mouse models (Qin et al., 2013; Massalimova et al., 2020; Bergamino et al., 2023).”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites Qin et al., 2013 source
    • cites Massalimova et al., 2020 source

      The Discussion/Conclusion (p. 8) reports DTI-detected white-matter changes in homozygous P301L mice, supporting the white-matter impairment attributed to this study. The paper identifies P301L as a model of human tauopathy, not specifically an AD mouse model, and reports no comparable changes in hemizygous mice. The other citations may address the sentence’s reference to various models, but this source alone does not establish that breadth. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites Bergamino et al., 2023 source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    The olfactory bulb is affected early in AD, playing an important role in the onset and progression of the disease.

    “The OLF is affected early in AD, playing an important role in the onset and progression of the disease (Zhou et al., 2024).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Zhou et al., 2024 source

      The Introduction and Discussion address early AD-related changes in the hippocampus, particularly iron deposition, but do not address the olfactory bulb. Searches for “olfactory bulb,” “OLF,” and early olfactory involvement in AD found no passage supporting the claim. Page numbers were not available in our copy. (LLM, conf=0.76)

      Experimental — accuracy not yet measured
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    Premisecitation

    Acquisition of spatial search strategies and reversal learning in the MWM depend on functional connectivity of the hippocampus.

    “A study combining neuroimaging and behavior found that acquisition of spatial search strategies and reversal learning in the MWM depend on functional connectivity of the hippocampus (Shah et al., 2019).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Shah et al., 2019 source

      The Discussion (page unavailable) describes hippocampal connections as important during acquisition and reports hippocampal connectivity after reversal learning. The results also link hippocampal connectivity with spatial strategies after reversal. However, the study reports associations across broader brain networks, not a demonstrated dependence of both learning processes specifically on hippocampal connectivity. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    A prior investigation discovered decreased AxD and FA values within the basal forebrain of 2-month-old 3×Tg-AD mice, with progressive temporal declines in AxD and FA at 8 and 15 months of age.

    “For instance, a prior investigation discovered decreased AxD and FA values within the basal forebrain of 2-month-old 3×Tg-AD mice, with progressive temporal declines in AxD and FA at 8 and 15 months of age (Falangola et al., 2021).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Falangola et al., 2021 source

      The Discussion reports lower basal-forebrain D∥ (AxD) and FA in 2-month-old 3xTg-AD mice than in controls, and lower values for both metrics at 8 months. However, the Results (Age-related trajectories; page unavailable) report no significant basal-forebrain changes between 8 and 15 months, so the claimed progressive decline through 15 months is not supported. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    Previous studies have demonstrated significant functional and structural changes in the hippocampus in AD, which are likely due to impaired neurogenesis.

    “Previous studies have demonstrated significant functional and structural changes in the hippocampus in AD, which are likely due to impaired neurogenesis (Mu and Gage, 2011; Chiquita et al., 2019).”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites Mu and Gage, 2011 source

      The Abstract describes early hippocampal damage in AD and says altered neurogenesis may contribute to neuronal vulnerability and memory impairment. But it explicitly states that causal links have not been established, while the Conclusions note both increased and decreased neurogenesis across studies. The source therefore does not establish that hippocampal functional and structural changes are likely due to impaired neurogenesis. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites Chiquita et al., 2019 source

      The Discussion reports hippocampal structural differences and recognition-memory impairment in 3xTg-AD mice, and notes evidence of hippocampal atrophy in AD patients. It does not attribute these changes to impaired neurogenesis; the proposed mechanism in the cited discussion is intraneuronal Aβ accumulation. The paper’s direct findings are also in a mouse model, not patients with AD. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • Rests on an assumption: The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Previous neuroimaging studies comparing GM changes between AD patients and healthy individuals have identified significant morphological atrophy in the hippocampus, entorhinal cortex, amygdala, putamen, and thalamus.

    “Previous neuroimaging studies comparing GM changes between AD patients and healthy individuals have identified significant morphological atrophy in the hippocampus, entorhinal cortex, amygdala, putamen, and thalamus (de Jong et al., 2008; Serra et al., 2010; Matsuda, 2013).”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites de Jong et al., 2008 source

      The Abstract and Discussion report significantly smaller hippocampal, putaminal, and thalamic volumes in patients with probable Alzheimer’s disease; the Introduction also reports earlier imaging evidence of amygdalar atrophy. Our copy does not identify entorhinal cortex atrophy specifically. The study compared patients with memory complainers rather than a group described simply as healthy individuals. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites Serra et al., 2010 source
    • cites Matsuda, 2013
  • May combine two claims.

    Premisecitation

    Previous studies on 3×Tg-AD mice have reported significant volumetric decreases and WM microstructural abnormalities in the corpus callosum and internal capsule compared with controls.

    “Previous studies on 3×Tg-AD mice have reported significant volumetric decreases (Kong et al., 2018) and WM microstructural abnormalities (Praet et al., 2018; Gatto et al., 2019; Bergamino et al., 2023) in the CC and internal capsule compared with controls.”
    Quote in the paperNot a substantial claim2 of 3 sources checked
    • cites Kong et al., 2018 source
    • cites Praet et al., 2018 source

      The Results (ROI-based analysis; page unavailable) report significantly reduced fractional anisotropy in parts of the corpus callosum compared with wild-type controls, supporting a white-matter microstructural abnormality. However, the Methods identify the mice as APP/PS1, not 3×Tg-AD, and the cited passages do not report an internal-capsule finding. The volumetric-decrease claim is cited to Kong et al., not Praet et al., and is not assessed here. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites Gatto et al., 2019 source

      The Results and Discussion report white-matter microstructural abnormalities in the corpus callosum compared with controls. But the mice studied were R6/2 Huntington’s disease mice, not 3×Tg-AD mice, and these passages do not report abnormalities in the internal capsule. The volumetric-decrease portion of the citing sentence is attributed to Kong et al., not to this source. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    The Wnt signaling pathway inhibited oligodendrocyte differentiation and maturation while exerting a negative regulatory role in myelin development.

    “In a previous study, the Wnt signaling pathway inhibited oligodendrocyte differentiation and maturation while exerting a negative regulatory role in myelin development (Boccazzi et al., 2023).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Boccazzi et al., 2023 source

      The Abstract (p. 3) reports that high WNT tone impaired oligodendrocyte differentiation, and the Results (p. 9) link WNT activation to maturation arrest and reduced MBP expression. The Introduction (p. 3), however, says WNT’s roles in myelination depend on CNS region and developmental stage; it does not support an unqualified negative regulatory role in myelin development. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Mek1 is an upstream component of the MAPK signaling pathway that can enhance myelin growth.

    “Mek1 is an upstream component of the MAPK signaling pathway that can enhance myelin growth (Ishii et al., 2021).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Ishii et al., 2021 source
  • May combine two claims.

    Findingown data

    Bulk RNA-seq revealed differential expression of 1389 genes between the two groups, with 774 genes up-regulated and 615 genes down-regulated in the 3×Tg-AD group.

    “The findings revealed differential expression of 1389 genes between the two groups, with 774 genes up-regulated and 615 genes down-regulated in the 3×Tg-AD group (Figure 8A and B).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    In the open field test, there were no significant differences in distance traveled or speed between 9-month-old 3×Tg-AD mice and controls.

    “The open field test assessed locomotor activity, revealing no significant differences in distance traveled or speed between the 3×Tg-AD mice and controls (Figure 1A).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Compared with controls, 9-month-old 3×Tg-AD mice exhibited a significant decrease in gray matter volume primarily in the bilateral hippocampi, right retrohippocampal region, right subparafascicular area of thalamus, bilateral primary somatosensory area, left caudoputamen, left primary motor area, right anterolateral visual area, anterior cingulate area, and olfactory bulb (P < 0.05 with familywise

    “Compared with the control group, the 3×Tg-AD group exhibited a significant decrease in GM volume, primarily in the bilateral hippocampi, right retrohippocampal region, right subparafascicular area of thalamus, bilateral primary somatosensory area, left caudoputamen (CP), left primary motor area, right anterolateral visual area, anterior cingulate area, and olfactory bulb (OLF).”
    • Also stated in: § Voxel-based morphometry analysis of gray matter and white matter volumes · plain
      “The GM volume in the 3×Tg-AD group was markedly lower than that in the control group.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Mice with lower Y-maze alteration exhibited reduced GM volume, decreased FA, increased MD, and elevated RD within the hippocampus.

    “This study revealed that mice with lower Y-maze alteration exhibited reduced GM volume, decreased FA, increased MD, and elevated RD within the hippocampus.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: MRI metrics (GM volume, FA, MD, RD) are valid indices of brain microstructure and pathology in this model.
  • May combine two claims.

    Findingreasoning

    Memory impairment occurs alongside depressive-like behavior exhibited by these mice.

    “Consequently, memory impairment occurs alongside depressive-like behavior exhibited by these mice.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.
  • Classified as probably not a substantial claim. May combine two claims.

    Interpretationcitation

    Previous studies have demonstrated the feasibility of combining imaging and genomics analysis, which could lead to a better understanding of the behavioral and pathological changes in Alzheimer's disease.

    “Such previous studies have demonstrated the feasibility of combining imaging and genomics analysis, which could lead to a better understanding of the behavioral and pathological changes in AD.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Premisecitation

    VBM is an automated technique that allows for examination of brain anatomy differences between groups at a voxel-wise level without requiring predefined regions of interest.

    “VBM is an automated technique that allows for the examination of brain anatomy differences between groups at a voxel-wise level without requiring predefined regions of interest (ROIs) (Good et al., 2001).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Good et al., 2001 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Behavioral tests were conducted by two trained and experienced observers who were blinded to the treatment conditions.

    “The behavioral tests were conducted by two trained and experienced observers who were blinded to the treatment conditions.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A previous DTI study did not observe any changes in diffusion metrics or alterations in myelin staining or white matter volumes across mice aged from 11 to 17 months.

    “However, a previous DTI study did not observe any changes in diffusion metrics or alterations in myelin staining or WM volumes across mice aged from 11 to 17 months (Kastyak-Ibrahim et al., 2013).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Kastyak-Ibrahim et al., 2013 source
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    Control mice were wild type non-transgenic SPF-grade animals of the same sex, age, and weight as the 3×Tg-AD mice.

    “The control mice were wild type non-transgenic SPF-grade animals of the same sex, age, and weight as the 3×Tg-AD mice.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    One study involving mice aged between 11 and 17 months found no WM DTI changes compared with controls.

    “One study involving mice aged between 11 and 17 months found no WM DTI changes compared with controls (Kastyak-Ibrahim et al., 2013).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Kastyak-Ibrahim et al., 2013 source
  • Classified as probably not a substantial claim.

    Interpretationreasoning

    GM degeneration leads to microstructural abnormality through demyelination in the hippocampus and striatum-like amygdala nuclei.

    “One explanation for these diffusion metric changes in the hippocampus and sAMY is that GM degeneration leads to microstructural abnormality through demyelination.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A previous neuroimaging study showed that olfactory impairment is associated with hippocampal atrophy and entorhinal cortical thinning in preclinical AD.

    “A previous neuroimaging study showed that olfactory impairment is associated with hippocampal atrophy and entorhinal cortical thinning in preclinical AD (Hagan, 2023).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Hagan, 2023 source
  • May combine two claims.

    Interpretationreasoning

    The directionality of DTI metrics observed in this study is generally consistent with most previous findings and highlights that outcomes are dependent on both age and region location within the model.

    “The directionality of DTI metrics observed in our study is generally consistent with most previous findings and highlights that outcomes are dependent on both age and region location within the model.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S2 (checkable).

    Interpretationreasoning

    Modulation of these pathways holds potential therapeutic value for AD.

    “These results suggest that modulation of these pathways holds potential therapeutic value for AD.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: The RNA-seq data from hippocampus reflects gene expression relevant to the MRI and behavioral changes.
  • May combine two claims.

    Interpretationown data

    These findings support the potential utilization of brain volume and diffusion metrics as biomarkers for AD pathology, which could be applied in the clinical diagnosis of AD in humans.

    “These findings support the potential utilization of brain volume and diffusion metrics as biomarkers for AD pathology, which could be applied in the clinical diagnosis of AD in humans.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.
    • Rests on an assumption: MRI metrics (GM volume, FA, MD, RD) are valid indices of brain microstructure and pathology in this model.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    The small number of mice reduced the statistical power of the analysis.

    “The small number of mice reduced the statistical power of the analysis.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.
  • May combine two claims.

    Study design and conductreasoning

    Our study focused exclusively on male 3×Tg-AD mice, and all the differences observed in our results are based on this condition.

    “It is important to note that our study focused exclusively on male 3×Tg-AD mice, and all the differences observed in our results are based on this condition.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductreasoning

    The suboptimal DTI sequence parameters may account for our inability to achieve family-wise error correction during DTI data analysis.

    “This aspect may account for our inability to achieve family-wise error correction during DTI data analysis.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: DTI has technical limitations in accurately describing intricate GM geometry and WM microstructural change.
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Study design and conductnone given

    The DTI sequence parameters used in this study, including the b-value and the slice-to-in-plane resolution ratio, are suboptimal and require further optimization in future investigations.

    “Third, the DTI sequence parameters used in this study, including the b-value and the slice-to-in-plane resolution ratio, are suboptimal and require further optimization in future investigations.”
    Quote in the paperNot a substantial claim
    • Rests on an assumption: DTI has technical limitations in accurately describing intricate GM geometry and WM microstructural change.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Women often experience accelerated cognitive decline despite a similar or lower amyloid burden compared with men.

    “Clinical evidence of sex-specific cognitive trajectories in AD further supports this distinction, as women often experience accelerated cognitive decline despite a similar or lower amyloid burden compared with men (Laws et al., 2018).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Laws et al., 2018 source
    • Rests on an assumption: The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.
51 of 51
  • The paper relies on this without support.

    Mice at 9 months of age typically commence to exhibit cognitive function and behavioral disorders.

    “From the perspective of early intervention strategies, mice of this age group typically commence to exhibit cognitive function and behavioral disorders.”
  • The paper relies on this without support.

    The 9-month age represents a 'golden window' for early intervention in the 3×Tg-AD model.

    “Research on mice at this stage can test whether early intervention measures can reverse the abnormal functions during the golden window of early intervention.”
  • The paper relies on this without support.

    The mechanisms responsible for brain structural changes in Alzheimer's disease are poorly understood.

    “The mechanisms responsible for brain structural changes in AD are also poorly understood.”
  • The paper relies on this without support.

    The complete elucidation of the regulatory mechanism underlying brain imaging alterations at the molecular level remains elusive.

    “Furthermore, the complete elucidation of the regulatory mechanism underlying brain imaging alterations at the molecular level remains elusive.”
  • The paper relies on this without support.

    The causative factors contributing to Alzheimer's disease progression remain unclear.

    “Despite extensive research efforts into understanding AD pathology, the causative factors contributing to its progression remain unclear.”
  • The paper relies on this without support.

    The 3×Tg-AD mouse model at 9 months of age is an appropriate model for the AD stage being studied.

    “In the present study, we combined VBM of T2-weighted MRI with whole-brain voxel-based analyses of DTI to investigate changes in brain volume and microstructure between 9-month-old 3×Tg-AD mice and normal controls.”
  • The paper relies on this without support.

    Amyloid deposits propagate from the hippocampus to other regions and tau pathology emerges between 2 and 9 months in 3×Tg-AD mice.

    “As the disease progresses from 2 to 9 months, amyloid deposits begin to propagate from the hippocampus to other regions, accompanied by the emergence of tau pathology.”
  • The paper relies on this without support.

    The fiber tracts exhibiting significantly lower volume are involved in high-order cognitive functions.

    “The fiber tracts exhibiting a significantly lower volume are all involved in high-order cognitive functions.”
  • The paper relies on this without support.

    The 3×Tg-AD mouse model at 9 months of age recapitulates key aspects of human AD pathology relevant to the study's conclusions.

    “It is important to note that our study focused exclusively on male 3×Tg-AD mice, and all the differences observed in our results are based on this condition.”
  • The paper relies on this without support.

    MRI metrics (GM volume, FA, MD, RD) are valid indices of brain microstructure and pathology in this model.

    “This study revealed that mice with lower Y-maze alteration exhibited reduced GM volume, decreased FA, increased MD, and elevated RD within the hippocampus.”
  • The paper relies on this without support.

    DTI has technical limitations in accurately describing intricate GM geometry and WM microstructural change.

    “Finally, owing to the technical limitations of DTI in accurately describing intricate GM geometry and WM microstructural change, it is essential to incorporate novel acquisition methods validated for addressing these challenges.”
  • The paper relies on this without support.

    The RNA-seq data from hippocampus reflects gene expression relevant to the MRI and behavioral changes.

    “To further comprehend the neural mechanisms underlying the neuroimaging alterations in 3×Tg-AD mice, bulk RNA-seq was conducted on the hippocampus tissue.”
12 of 12

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • Figure 4 reverses the direction of diffusivity changes

    Major

    The results text says AxD, MD, and RD were higher in the 3×Tg-AD group, whereas the Figure 4 caption says these indices decreased.

  • Claimed significant Y-maze correlation for left corpus callosum has P = 0.052

    Minor

    The white-matter correlation summary includes left CCb among regions with significant positive relationships with Y-maze performance. Its Table 1 Y-maze P-value exceeds the stated P < 0.05 significance threshold.

  • Discussion reports bilateral thalamic gray-matter loss, but results report only right-sided loss

    Minor

    The gray-matter results identify the right subparafascicular thalamic area, not both thalami, among regions with decreased volume.

  • Right somatosensory volume has a positive, not negative, latency correlation

    Minor

    The text says every listed gray-matter region has a negative correlation with latency to cross the platform. Table 1 reports a positive, significant correlation for R_SSR (r = 0.701, P = 0.001).

  • Additional Table 1 is not a DEG table

    Minor

    The RNA-seq results point readers to Additional Table 1 for differentially expressed genes, but that table contains correlations between diffusion indices and behavior.

5 of 5

Cites

Flagged first, then by citations

2 of the 79 references couldn’t be matched to a known paper.

Authors
Li, Y., Tang, Z., Yao, M., Ran, Y., & Qiu, Z.
Affiliations
  • Jinan University (CN)
  • Guangzhou Key Laboratory of Formula-pattern Research Center, School of Traditional Chinese Medicine, Jinan University, Guangzhou, Guangdong Province, China
Corresponding author
Li, Yongxin
Venue
Neural Regeneration Research
Published
2025-09-29
Volume
21
Issue
8
Pages
3831-3841
ISSN
  • 1673-5374 (ISSN-L)
  • 1876-7958
OpenAlex
W4414613681
Cited by
0
References
79
FWCI
0.00
Type
journal article
Language
en
Open access
Locations
  • Neural Regeneration Research (publishedVersion, cc-by-nc-sa)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • PubMed Central (submittedVersion, cc-by)
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
Keywords
Alzheimer's disease, amyloid plaques, tau pathology, hippocampus, dentate gyrus, gray matter volume, white matter microstructure, fractional anisotropy, diffusion tensor imaging, brain morphometry, differentially expressed genes, Wnt signaling, MAPK signaling, synapses

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-24.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-24.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

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