Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 843

The DOI matches its Crossref record; 14 of the 14 references it cites were found in a registry or an index.

Cytosolic Sensing of Viruses

Open access
Goubau, Delphine, Deddouche, Safia, Reis e Sousa, Caetano·2013·Immunity

Abstract

Cells are equipped with mechanisms that allow them to rapidly detect and respond to viruses. These defense mechanisms rely partly on receptors that monitor the cytosol for the presence of atypical nucleic acids associated with virus infection. RIG-I-like receptors detect RNA molecules that are absent from the uninfected host. DNA receptors alert the cell to the abnormal presence of that nucleic acid in the cytosol. Signaling by RNA and DNA receptors results in the induction of restriction factors that prevent virus replication and establish cell-intrinsic antiviral immunity. In light of these formidable obstacles, viruses have evolved mechanisms of evasion, masking nucleic acid structures recognized by the host, sequestering themselves away from the cytosol or targeting host sensors, and signaling adaptors for deactivation or degradation. Here, we detail recent advances in the molecular understanding of cytosolic nucleic acid detection and its evasion by viruses.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.immuni.2013.05.007

Cites

14 of 14 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 14 references

Research works printed but not linked: 166

  1. Abdullah, 2012, RIG-I detects infection with live Listeria by sensing secreted bacterial nucleic acids, EMBO J., 31, 4153, 10.1038/emboj.2012.274 · DOI
  2. Ablasser, 2009, RIG-I-dependent sensing of poly(dA:dT) through the induction of an RNA polymerase III-transcribed RNA intermediate, Nat. Immunol., 10, 1065, 10.1038/ni.1779 · DOI · Paper page
  3. Aguirre, 2012, DENV inhibits type I IFN production in infected cells by cleaving human STING, PLoS Pathog., 8, e1002934, 10.1371/journal.ppat.1002934 · DOI · Paper page
  4. Ahn, 2012, STING manifests self DNA-dependent inflammatory disease, Proc. Natl. Acad. Sci. USA, 109, 19386, 10.1073/pnas.1215006109 · DOI · Paper page
  5. Allen, 2011, NLRX1 protein attenuates inflammatory responses to infection by interfering with the RIG-I-MAVS and TRAF6-NF-κB signaling pathways, Immunity, 34, 854, 10.1016/j.immuni.2011.03.026 · DOI · Paper page
  6. An, 2008, Phosphatase SHP-1 promotes TLR- and RIG-I-activated production of type I interferon by inhibiting the kinase IRAK1, Nat. Immunol., 9, 542, 10.1038/ni.1604 · DOI · Paper page
  7. Arnoult, 2011, Mitochondria in innate immunity, EMBO Rep., 12, 901, 10.1038/embor.2011.157 · DOI
  8. Barral, 2007, MDA-5 is cleaved in poliovirus-infected cells, J. Virol., 81, 3677, 10.1128/JVI.01360-06 · DOI · Paper page
  9. Barral, 2009, RIG-I is cleaved during picornavirus infection, Virology, 391, 171, 10.1016/j.virol.2009.06.045 · DOI · Paper page
  10. Baum, 2010, Preference of RIG-I for short viral RNA molecules in infected cells revealed by next-generation sequencing, Proc. Natl. Acad. Sci. USA, 107, 16303, 10.1073/pnas.1005077107 · DOI · Paper page
  11. Berke, 2012, MDA5 cooperatively forms dimers and ATP-sensitive filaments upon binding double-stranded RNA, EMBO J., 31, 1714, 10.1038/emboj.2012.19 · DOI
  12. Berke, 2012, MDA5 assembles into a polar helical filament on dsRNA, Proc. Natl. Acad. Sci. USA, 109, 18437, 10.1073/pnas.1212186109 · DOI
  13. Besch, 2009, Proapoptotic signaling induced by RIG-I and MDA-5 results in type I interferon-independent apoptosis in human melanoma cells, J. Clin. Invest., 119, 2399
  14. Binder, 2011, Molecular mechanism of signal perception and integration by the innate immune sensor retinoic acid-inducible gene-I (RIG-I), J. Biol. Chem., 286, 27278, 10.1074/jbc.M111.256974 · DOI
  15. Boonyaratanakornkit, 2011, The C proteins of human parainfluenza virus type 1 limit double-stranded RNA accumulation that would otherwise trigger activation of MDA5 and protein kinase R, J. Virol., 85, 1495, 10.1128/JVI.01297-10 · DOI
  16. Bozym, 2012, Focal adhesion kinase is a component of antiviral RIG-I-like receptor signaling, Cell Host Microbe, 11, 153, 10.1016/j.chom.2012.01.008 · DOI
  17. Brunette, 2012, Extensive evolutionary and functional diversity among mammalian AIM2-like receptors, J. Exp. Med., 209, 1969, 10.1084/jem.20121960 · DOI
  18. Bruns, 2012, Activation of RIG-I-like receptor signal transduction, Crit. Rev. Biochem. Mol. Biol., 47, 194, 10.3109/10409238.2011.630974 · DOI
  19. Cavlar, 2012, Induction of type I IFNs by intracellular DNA-sensing pathways, Immunol. Cell Biol., 90, 474, 10.1038/icb.2012.11 · DOI
  20. Chen, 2011, Activation of STAT6 by STING is critical for antiviral innate immunity, Cell, 147, 436, 10.1016/j.cell.2011.09.022 · DOI · Paper page
  21. Chen, 2013, RAVER1 is a coactivator of MDA5-mediated cellular antiviral response, J. Mol. Cell. Biol., 5, 111, 10.1093/jmcb/mjt006 · doi:10.1093/jmcb/mjt006
  22. Chen, 2013, Induction of Siglec-G by RNA viruses inhibits the innate immune response by promoting RIG-I degradation, Cell, 152, 467, 10.1016/j.cell.2013.01.011 · DOI · Paper page
  23. Chiu, 2009, RNA polymerase III detects cytosolic DNA and induces type I interferons through the RIG-I pathway, Cell, 138, 576, 10.1016/j.cell.2009.06.015 · DOI · Paper page
  24. Civril, 2011, The RIG-I ATPase domain structure reveals insights into ATP-dependent antiviral signalling, EMBO Rep., 12, 1127, 10.1038/embor.2011.190 · DOI
  25. Cristea, 2010, Human cytomegalovirus pUL83 stimulates activity of the viral immediate-early promoter through its interaction with the cellular IFI16 protein, J. Virol., 84, 7803, 10.1128/JVI.00139-10 · DOI · Paper page
  26. Crow, 2011, Type I interferonopathies: a novel set of inborn errors of immunity, Ann. N Y Acad. Sci., 1238, 91, 10.1111/j.1749-6632.2011.06220.x · DOI · Paper page
  27. Cui, 2010, NLRC5 negatively regulates the NF-kappaB and type I interferon signaling pathways, Cell, 141, 483, 10.1016/j.cell.2010.03.040 · DOI · Paper page
  28. Dixit, 2010, Peroxisomes are signaling platforms for antiviral innate immunity, Cell, 141, 668, 10.1016/j.cell.2010.04.018 · DOI · Paper page
  29. Duggal, 2012, Evolutionary conflicts between viruses and restriction factors shape immunity, Nat. Rev. Immunol., 12, 687, 10.1038/nri3295 · DOI · Paper page
  30. Eisenächer, 2012, Regulation of RLR-mediated innate immune signaling—it is all about keeping the balance, Eur. J. Cell Biol., 91, 36, 10.1016/j.ejcb.2011.01.011 · DOI
  31. Feng, 2012, MDA5 Detects the Double-Stranded RNA Replicative Form in Picornavirus-Infected Cells, Cell Rep., 2, 1187, 10.1016/j.celrep.2012.10.005 · DOI · Paper page
  32. Ferguson, 2012, DNA-PK is a DNA sensor for IRF-3-dependent innate immunity, Elife, 1, e00047, 10.7554/eLife.00047 · DOI · Paper page
  33. Ferrage, 2012, Structure and Dynamics of the Second CARD of Human RIG-I Provide Mechanistic Insights into Regulation of RIG-I Activation, Structure, 20, 2048, 10.1016/j.str.2012.09.003 · DOI
  34. Fredericksen, 2008, Establishment and maintenance of the innate antiviral response to West Nile Virus involves both RIG-I and MDA5 signaling through IPS-1, J. Virol., 82, 609, 10.1128/JVI.01305-07 · DOI · Paper page
  35. Friedman, 2008, The tumour suppressor CYLD is a negative regulator of RIG-I-mediated antiviral response, EMBO Rep., 9, 930, 10.1038/embor.2008.136 · DOI · Paper page
  36. Gack, 2007, TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity, Nature, 446, 916, 10.1038/nature05732 · DOI · Paper page
  37. Gack, 2010, Phosphorylation-mediated negative regulation of RIG-I antiviral activity, J. Virol., 84, 3220, 10.1128/JVI.02241-09 · DOI
  38. García-Sastre, 2011, Induction and evasion of type I interferon responses by influenza viruses, Virus Res., 162, 12, 10.1016/j.virusres.2011.10.017 · DOI · Paper page
  39. Garcin, 1995, The 5′ ends of Hantaan virus (Bunyaviridae) RNAs suggest a prime-and-realign mechanism for the initiation of RNA synthesis, J. Virol., 69, 5754, 10.1128/JVI.69.9.5754-5762.1995 · DOI
  40. Gitlin, 2006, Essential role of mda-5 in type I IFN responses to polyriboinosinic:polyribocytidylic acid and encephalomyocarditis picornavirus, Proc. Natl. Acad. Sci. USA, 103, 8459, 10.1073/pnas.0603082103 · DOI · Paper page
  41. Goodbourn, 2009, The regulation of type I interferon production by paramyxoviruses, J. Interferon Cytokine Res., 29, 539, 10.1089/jir.2009.0071 · DOI
  42. Graef, 2010, The PB2 subunit of the influenza virus RNA polymerase affects virulence by interacting with the mitochondrial antiviral signaling protein and inhibiting expression of beta interferon, J. Virol., 84, 8433, 10.1128/JVI.00879-10 · DOI
  43. Gu, 2013, Human DEAD Box Helicase 3 Couples IκB Kinase {varepsilon} to Interferon Regulatory Factor 3 Activation, Mol. Cell. Biol., 33, 2004, 10.1128/MCB.01603-12 · DOI
  44. Habjan, 2008, Processing of genome 5′ termini as a strategy of negative-strand RNA viruses to avoid RIG-I-dependent interferon induction, PLoS ONE, 3, e2032, 10.1371/journal.pone.0002032 · DOI · Paper page
  45. Hayakawa, 2011, ZAPS is a potent stimulator of signaling mediated by the RNA helicase RIG-I during antiviral responses, Nat. Immunol., 12, 37, 10.1038/ni.1963 · DOI · Paper page
  46. Holm, 2012, Virus-cell fusion as a trigger of innate immunity dependent on the adaptor STING, Nat. Immunol., 13, 737, 10.1038/ni.2350 · DOI
  47. Hong, 2012, Structure and functional characterization of the RNA-binding element of the NLRX1 innate immune modulator, Immunity, 36, 337, 10.1016/j.immuni.2011.12.018 · DOI
  48. Horner, 2011, Mitochondrial-associated endoplasmic reticulum membranes (MAM) form innate immune synapses and are targeted by hepatitis C virus, Proc. Natl. Acad. Sci. USA, 108, 14590, 10.1073/pnas.1110133108 · DOI · Paper page
  49. Hornung, 2006, 5′-Triphosphate RNA Is the Ligand for RIG-I, Science, 314, 994, 10.1126/science.1132505 · DOI · Paper page
  50. Hou, 2011, MAVS forms functional prion-like aggregates to activate and propagate antiviral innate immune response, Cell, 146, 448, 10.1016/j.cell.2011.06.041 · DOI · Paper page
  51. Huang, 2012, Active transposition in genomes, Annu. Rev. Genet., 46, 651, 10.1146/annurev-genet-110711-155616 · DOI · Paper page
  52. Huang, 2012, The structural basis for the sensing and binding of cyclic di-GMP by STING, Nat. Struct. Mol. Biol., 19, 728, 10.1038/nsmb.2333 · DOI · Paper page
  53. Inn, 2011, Inhibition of RIG-I-mediated signaling by Kaposi’s sarcoma-associated herpesvirus-encoded deubiquitinase ORF64, J. Virol., 85, 10899, 10.1128/JVI.00690-11 · DOI
  54. Iwai, 2010, Influenza A virus polymerase inhibits type I interferon induction by binding to interferon β promoter stimulator 1, J. Biol. Chem., 285, 32064, 10.1074/jbc.M110.112458 · DOI
  55. Jiang, 2011, Structural basis of RNA recognition and activation by innate immune receptor RIG-I, Nature, 479, 423, 10.1038/nature10537 · DOI · Paper page
  56. Jiang, 2011, Innate immune responses in human monocyte-derived dendritic cells are highly dependent on the size and the 5′ phosphorylation of RNA molecules, J. Immunol., 187, 1713, 10.4049/jimmunol.1100361 · DOI
  57. Jiang, 2012, Ubiquitin-Induced Oligomerization of the RNA Sensors RIG-I and MDA5 Activates Antiviral Innate Immune Response, Immunity, 36, 959, 10.1016/j.immuni.2012.03.022 · DOI · Paper page
  58. Jin, 2008, MPYS, a novel membrane tetraspanner, is associated with major histocompatibility complex class II and mediates transduction of apoptotic signals, Mol. Cell. Biol., 28, 5014, 10.1128/MCB.00640-08 · DOI · Paper page
  59. Jin, 2011, MPYS is required for IFN response factor 3 activation and type I IFN production in the response of cultured phagocytes to bacterial second messengers cyclic-di-AMP and cyclic-di-GMP, J. Immunol., 187, 2595, 10.4049/jimmunol.1100088 · DOI · Paper page
  60. Jong, 2010, Kaposi’s sarcoma-associated herpesvirus viral protein kinase interacts with RNA helicase a and regulates host gene expression, J. Microbiol., 48, 206
  61. Kato, 2005, Cell type-specific involvement of RIG-I in antiviral response, Immunity, 23, 19, 10.1016/j.immuni.2005.04.010 · DOI · Paper page
  62. Kato, 2008, Length-dependent recognition of double-stranded ribonucleic acids by retinoic acid-inducible gene-I and melanoma differentiation-associated gene 5, J. Exp. Med., 205, 1601, 10.1084/jem.20080091 · DOI · Paper page
  63. Kerur, 2011, IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to Kaposi Sarcoma-associated herpesvirus infection, Cell Host Microbe, 9, 363, 10.1016/j.chom.2011.04.008 · DOI · Paper page
  64. Kim, 2010, Aspartate-glutamate-alanine-histidine box motif (DEAH)/RNA helicase A helicases sense microbial DNA in human plasmacytoid dendritic cells, Proc. Natl. Acad. Sci. USA, 107, 15181, 10.1073/pnas.1006539107 · DOI · Paper page
  65. 2007, Vol. 1 and 2
  66. Kok, 2011, The double-stranded RNA-binding protein PACT functions as a cellular activator of RIG-I to facilitate innate antiviral response, Cell Host Microbe, 9, 299, 10.1016/j.chom.2011.03.007 · DOI
  67. Kondo, 2013, DNA damage sensor MRE11 recognizes cytosolic double-stranded DNA and induces type I interferon by regulating STING trafficking, Proc. Natl. Acad. Sci. USA, 110, 2969, 10.1073/pnas.1222694110 · DOI · Paper page
  68. Koshiba, 2011, Mitochondrial membrane potential is required for MAVS-mediated antiviral signaling, Sci. Signal., 4, ra7, 10.1126/scisignal.2001147 · DOI · Paper page
  69. Kowalinski, 2011, Structural basis for the activation of innate immune pattern-recognition receptor RIG-I by viral RNA, Cell, 147, 423, 10.1016/j.cell.2011.09.039 · DOI · Paper page
  70. Kumar, 2011, NLRC5 deficiency does not influence cytokine induction by virus and bacteria infections, J. Immunol., 186, 994, 10.4049/jimmunol.1002094 · DOI
  71. Kumar, 2011, Hepatitis B virus regulatory HBx protein binds to adaptor protein IPS-1 and inhibits the activation of beta interferon, J. Virol., 85, 987, 10.1128/JVI.01825-10 · DOI
  72. Lee, 2013, Identification of regulators of the innate immune response to cytosolic DNA and retroviral infection by an integrative approach, Nat. Immunol., 14, 179, 10.1038/ni.2509 · DOI
  73. Lei, 2012, The mitochondrial proteins NLRX1 and TUFM form a complex that regulates type I interferon and autophagy, Immunity, 36, 933, 10.1016/j.immuni.2012.03.025 · DOI · Paper page
  74. Lei, 2013, The NLR protein, NLRX1, and its partner, TUFM, reduce type I interferon, and enhance autophagy, Autophagy, 9, 432, 10.4161/auto.23026 · DOI
  75. Leung, 2012, Structural insights into RNA recognition and activation of RIG-I-like receptors, Curr. Opin. Struct. Biol., 22, 297, 10.1016/j.sbi.2012.03.011 · DOI
  76. Leung, 2012, Molecular mechanisms of viral inhibitors of RIG-I-like receptors, Trends Microbiol., 20, 139, 10.1016/j.tim.2011.12.005 · DOI
  77. Li, 2005, Hepatitis C virus protease NS3/4A cleaves mitochondrial antiviral signaling protein off the mitochondria to evade innate immunity, Proc. Natl. Acad. Sci. USA, 102, 17717, 10.1073/pnas.0508531102 · DOI · Paper page
  78. Li, 2011, Mitochondrial antiviral signaling protein (MAVS) monitors commensal bacteria and induces an immune response that prevents experimental colitis, Proc. Natl. Acad. Sci. USA, 108, 17390, 10.1073/pnas.1107114108 · DOI
  79. Li, 2012, Acetylation modulates cellular distribution and DNA sensing ability of interferon-inducible protein IFI16, Proc. Natl. Acad. Sci. USA, 109, 10558, 10.1073/pnas.1203447109 · DOI · Paper page
  80. Lind, 2012, Immunology in the clinic review series; focus on type 1 diabetes and viruses: the innate immune response to enteroviruses and its possible role in regulating type 1 diabetes, Clin. Exp. Immunol., 168, 30, 10.1111/j.1365-2249.2011.04557.x · DOI
  81. Liu, 2012, The mitochondrial targeting chaperone 14-3-3ε regulates a RIG-I translocon that mediates membrane association and innate antiviral immunity, Cell Host Microbe, 11, 528, 10.1016/j.chom.2012.04.006 · DOI
  82. Luo, 2011, Structural insights into RNA recognition by RIG-I, Cell, 147, 409, 10.1016/j.cell.2011.09.023 · DOI · Paper page
  83. Luo, 2012, Visualizing the Determinants of Viral RNA Recognition by Innate Immune Sensor RIG-I, Structure, 20, 1983, 10.1016/j.str.2012.08.029 · DOI
  84. Luo, 2013, Duplex RNA Activated ATPases (DRAs): Platforms for RNA sensing, signaling and processing, RNA Biol., 10, 111, 10.4161/rna.22706 · DOI
  85. Malathi, 2007, Small self-RNA generated by RNase L amplifies antiviral innate immunity, Nature, 448, 816, 10.1038/nature06042 · DOI · Paper page
  86. Marq, 2010, Unpaired 5′ ppp-nucleotides, as found in arenavirus double-stranded RNA panhandles, are not recognized by RIG-I, J. Biol. Chem., 285, 18208, 10.1074/jbc.M109.089425 · DOI
  87. Marq, 2011, Short double-stranded RNAs with an overhanging 5′ ppp-nucleotide, as found in arenavirus genomes, act as RIG-I decoys, J. Biol. Chem., 286, 6108, 10.1074/jbc.M110.186262 · DOI
  88. McCartney, 2008, MDA-5 recognition of a murine norovirus, PLoS Pathog., 4, e1000108, 10.1371/journal.ppat.1000108 · DOI · Paper page
  89. McCartney, 2011, RNA sensor-induced type I IFN prevents diabetes caused by a β cell-tropic virus in mice, J. Clin. Invest., 121, 1497, 10.1172/JCI44005 · DOI
  90. Melchjorsen, 2010, Early innate recognition of herpes simplex virus in human primary macrophages is mediated via the MDA5/MAVS-dependent and MDA5/MAVS/RNA polymerase III-independent pathways, J. Virol., 84, 11350, 10.1128/JVI.01106-10 · DOI
  91. Mi, 2010, SUMOylation of RIG-I positively regulates the type I interferon signaling, Protein Cell, 1, 275, 10.1007/s13238-010-0030-1 · DOI
  92. Miyashita, 2011, DDX60, a DEXD/H box helicase, is a novel antiviral factor promoting RIG-I-like receptor-mediated signaling, Mol. Cell. Biol., 31, 3802, 10.1128/MCB.01368-10 · DOI · Paper page
  93. Monroe, 2009, Identification of host cytosolic sensors and bacterial factors regulating the type I interferon response to Legionella pneumophila, PLoS Pathog., 5, e1000665, 10.1371/journal.ppat.1000665 · DOI
  94. Motz, 2013, Paramyxovirus V proteins disrupt the fold of the RNA sensor MDA5 to inhibit antiviral signaling, Science, 339, 690, 10.1126/science.1230949 · DOI
  95. Mukherjee, 2011, The coxsackievirus B 3C protease cleaves MAVS and TRIF to attenuate host type I interferon and apoptotic signaling, PLoS Pathog., 7, e1001311, 10.1371/journal.ppat.1001311 · DOI · Paper page
  96. Negishi, 2012, Cross-interference of RLR and TLR signaling pathways modulates antibacterial T cell responses, Nat. Immunol., 13, 659, 10.1038/ni.2307 · DOI
  97. Nistal-Villán, 2010, Negative role of RIG-I serine 8 phosphorylation in the regulation of interferon-beta production, J. Biol. Chem., 285, 20252, 10.1074/jbc.M109.089912 · DOI
  98. Okabe, 2009, Regulation of the innate immune response by threonine-phosphatase of Eyes absent, Nature, 460, 520, 10.1038/nature08138 · DOI
  99. Onomoto, 2012, Critical role of an antiviral stress granule containing RIG-I and PKR in viral detection and innate immunity, PLoS ONE, 7, e43031, 10.1371/journal.pone.0043031 · DOI · Paper page
  100. Oshiumi, 2010, DEAD/H BOX 3 (DDX3) helicase binds the RIG-I adaptor IPS-1 to up-regulate IFN-beta-inducing potential, Eur. J. Immunol., 40, 940, 10.1002/eji.200940203 · DOI · Paper page
  101. Oshiumi, 2012, Ubiquitin-mediated modulation of the cytoplasmic viral RNA sensor RIG-I, J. Biochem., 151, 5, 10.1093/jb/mvr111 · DOI
  102. Ouyang, 2012, Structural analysis of the STING adaptor protein reveals a hydrophobic dimer interface and mode of cyclic di-GMP binding, Immunity, 36, 1073, 10.1016/j.immuni.2012.03.019 · DOI · Paper page
  103. Paludan, 2013, Immune Sensing of DNA, Immunity, 38, 870, 10.1016/j.immuni.2013.05.004 · DOI · Paper page
  104. Peisley, 2011, Cooperative assembly and dynamic disassembly of MDA5 filaments for viral dsRNA recognition, Proc. Natl. Acad. Sci. USA, 108, 21010, 10.1073/pnas.1113651108 · DOI · Paper page
  105. Peisley, 2012, Kinetic mechanism for viral dsRNA length discrimination by MDA5 filaments, Proc. Natl. Acad. Sci. USA, 109, E3340, 10.1073/pnas.1208618109 · DOI
  106. Pichlmair, 2009, Activation of MDA5 requires higher-order RNA structures generated during virus infection, J. Virol., 83, 10761, 10.1128/JVI.00770-09 · DOI · Paper page
  107. Poeck, 2010, Recognition of RNA virus by RIG-I results in activation of CARD9 and inflammasome signaling for interleukin 1 beta production, Nat. Immunol., 11, 63, 10.1038/ni.1824 · DOI · Paper page
  108. Prantner, 2012, 5,6-Dimethylxanthenone-4-acetic acid (DMXAA) activates stimulator of interferon gene (STING)-dependent innate immune pathways and is regulated by mitochondrial membrane potential, J. Biol. Chem., 287, 39776, 10.1074/jbc.M112.382986 · DOI
  109. Rebsamen, 2009, DAI/ZBP1 recruits RIP1 and RIP3 through RIP homotypic interaction motifs to activate NF-kappaB, EMBO Rep., 10, 916, 10.1038/embor.2009.109 · DOI · Paper page
  110. Rebsamen, 2011, NLRX1/NOD5 deficiency does not affect MAVS signalling, Cell Death Differ., 18, 1387, 10.1038/cdd.2011.64 · DOI
  111. Rehwinkel, 2010, RIG-I detects viral genomic RNA during negative-strand RNA virus infection, Cell, 140, 397, 10.1016/j.cell.2010.01.020 · DOI · Paper page
  112. Roth-Cross, 2008, Murine coronavirus mouse hepatitis virus is recognized by MDA5 and induces type I interferon in brain macrophages/microglia, J. Virol., 82, 9829, 10.1128/JVI.01199-08 · DOI
  113. Sabbah, 2009, Activation of innate immune antiviral responses by Nod2, Nat. Immunol., 10, 1073, 10.1038/ni.1782 · DOI · Paper page
  114. Saitoh, 2009, Atg9a controls dsDNA-driven dynamic translocation of STING and the innate immune response, Proc. Natl. Acad. Sci. USA, 106, 20842, 10.1073/pnas.0911267106 · DOI · Paper page
  115. Sauer, 2011, The N-ethyl-N-nitrosourea-induced Goldenticket mouse mutant reveals an essential function of Sting in the in vivo interferon response to Listeria monocytogenes and cyclic dinucleotides, Infect. Immun., 79, 688, 10.1128/IAI.00999-10 · DOI · Paper page
  116. Schlee, 2009, Recognition of 5′ triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus, Immunity, 31, 25, 10.1016/j.immuni.2009.05.008 · DOI · Paper page
  117. Schmidt, 2009, 5′-triphosphate RNA requires base-paired structures to activate antiviral signaling via RIG-I, Proc. Natl. Acad. Sci. USA, 106, 12067, 10.1073/pnas.0900971106 · DOI · Paper page
  118. Schneider, 2007, Genome trimming by Borna disease viruses: viral replication control or escape from cellular surveillance?, Cell. Mol. Life Sci., 64, 1038, 10.1007/s00018-007-6545-9 · DOI
  119. Schoggins, 2011, A diverse range of gene products are effectors of the type I interferon antiviral response, Nature, 472, 481, 10.1038/nature09907 · DOI · Paper page
  120. Schröder, 2008, Viral targeting of DEAD box protein 3 reveals its role in TBK1/IKKepsilon-mediated IRF activation, EMBO J., 27, 2147, 10.1038/emboj.2008.143 · DOI · Paper page
  121. Soares, 2012, NLRX1 does not inhibit MAVS-dependent antiviral signaling, Innate Immun.
  122. Soulat, 2008, The DEAD-box helicase DDX3X is a critical component of the TANK-binding kinase 1-dependent innate immune response, EMBO J., 27, 2135, 10.1038/emboj.2008.126 · DOI · Paper page
  123. Sun, 2009, ERIS, an endoplasmic reticulum IFN stimulator, activates innate immune signaling through dimerization, Proc. Natl. Acad. Sci. USA, 106, 8653, 10.1073/pnas.0900850106 · DOI · Paper page
  124. Sun, 2012, Coronavirus papain-like proteases negatively regulate antiviral innate immune response through disruption of STING-mediated signaling, PLoS ONE, 7, e30802, 10.1371/journal.pone.0030802 · DOI · Paper page
  125. Suthar, 2012, The RIG-I-like Receptor LGP2 Controls CD8(+) T Cell Survival and Fitness, Immunity, 37, 235, 10.1016/j.immuni.2012.07.004 · DOI
  126. Takahasi, 2008, Nonself RNA-sensing mechanism of RIG-I helicase and activation of antiviral immune responses, Mol. Cell, 29, 428, 10.1016/j.molcel.2007.11.028 · DOI · Paper page
  127. Takaoka, 2007, DAI (DLM-1/ZBP1) is a cytosolic DNA sensor and an activator of innate immune response, Nature, 448, 501, 10.1038/nature06013 · DOI · Paper page
  128. Takeuchi, 2010, Pattern recognition receptors and inflammation, Cell, 140, 805, 10.1016/j.cell.2010.01.022 · DOI · Paper page
  129. Tanaka, 2012, STING specifies IRF3 phosphorylation by TBK1 in the cytosolic DNA signaling pathway, Sci. Signal., 5, ra20, 10.1126/scisignal.2002521 · DOI · Paper page
  130. Taylor, 2013, Recent advances in understanding viral evasion of type I interferon, Immunology, 138, 190, 10.1111/imm.12038 · DOI · Paper page
  131. Triantafilou, 2012, Visualisation of direct interaction of MDA5 and the dsRNA replicative intermediate form of positive strand RNA viruses, J. Cell Sci., 125, 4761, 10.1242/jcs.103887 · DOI
  132. Tsuchida, 2010, The ubiquitin ligase TRIM56 regulates innate immune responses to intracellular double-stranded DNA, Immunity, 33, 765, 10.1016/j.immuni.2010.10.013 · DOI · Paper page
  133. Unterholzner, 2010, IFI16 is an innate immune sensor for intracellular DNA, Nat. Immunol., 11, 997, 10.1038/ni.1932 · DOI · Paper page
  134. van Kasteren, 2012, Arterivirus and nairovirus ovarian tumor domain-containing Deubiquitinases target activated RIG-I to control innate immune signaling, J. Virol., 86, 773, 10.1128/JVI.06277-11 · DOI
  135. Varga, 2012, Influenza virus protein PB1-F2 inhibits t2he induction of type I interferon by binding to MAVS and decreasing mitochondrial membrane potential, J. Virol., 86, 8359, 10.1128/JVI.01122-12 · DOI · Paper page
  136. Vela, 2012, The thermodynamic basis for viral RNA detection by the RIG-I innate immune sensor, J. Biol. Chem., 287, 42564, 10.1074/jbc.M112.385146 · DOI
  137. Wang, 2007, Rig-I-/- mice develop colitis associated with downregulation of G alpha i2, Cell Res., 17, 858, 10.1038/cr.2007.81 · DOI
  138. Wang, 2011, The leader proteinase of foot-and-mouth disease virus negatively regulates the type I interferon pathway by acting as a viral deubiquitinase, J. Virol., 85, 3758, 10.1128/JVI.02589-10 · DOI
  139. Wang, 2011, Old World hantaviruses do not produce detectable amounts of dsRNA in infected cells and the 5′ termini of their genomic RNAs are monophosphorylated, J. Gen. Virol., 92, 1199, 10.1099/vir.0.029405-0 · doi:10.1099/vir.0.029405-0
  140. Wang, 2012, Ndfip1 negatively regulates RIG-I-dependent immune signaling by enhancing E3 ligase Smurf1-mediated MAVS degradation, J. Immunol., 189, 5304, 10.4049/jimmunol.1201445 · DOI
  141. Wang, 2012, Ankrd17 positively regulates RIG-I-like receptor (RLR)-mediated immune signaling, Eur. J. Immunol., 42, 1304, 10.1002/eji.201142125 · DOI
  142. Wang, 2012, Tetraspanin 6 (TSPAN6) negatively regulates retinoic acid-inducible gene I-like receptor-mediated immune signaling in a ubiquitination-dependent manner, J. Biol. Chem., 287, 34626, 10.1074/jbc.M112.390401 · DOI
  143. Wang, 2013, USP4 positively regulates RIG-I-mediated antiviral response through deubiquitination and stabilization of RIG-I, J. Virol., 87, 4507, 10.1128/JVI.00031-13 · DOI
  144. Weber, 2006, Double-stranded RNA is produced by positive-strand RNA viruses and DNA viruses but not in detectable amounts by negative-strand RNA viruses, J. Virol., 80, 5059, 10.1128/JVI.80.10.5059-5064.2006 · DOI · Paper page
  145. Weber, 2013, Incoming RNA virus nucleocapsids containing a 5′-triphosphorylated genome activate RIG-I and antiviral signaling, Cell Host Microbe, 13, 336, 10.1016/j.chom.2013.01.012 · DOI · Paper page
  146. Wei, 2010, The hepatitis B virus X protein disrupts innate immunity by downregulating mitochondrial antiviral signaling protein, J. Immunol., 185, 1158, 10.4049/jimmunol.0903874 · DOI
  147. Welz, 2012, A way to DAI, Cell Host Microbe, 11, 223, 10.1016/j.chom.2012.02.003 · DOI
  148. Wies, 2013, Dephosphorylation of the RNA sensors RIG-I and MDA5 by the phosphatase PP1 is essential for innate immune signaling, Immunity, 38, 437, 10.1016/j.immuni.2012.11.018 · DOI · Paper page
  149. Wu, 2013, Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5, Cell, 152, 276, 10.1016/j.cell.2012.11.048 · DOI · Paper page
  150. Wu, 2013, Cyclic GMP-AMP is an endogenous second messenger in innate immune signaling by cytosolic DNA, Science, 339, 826, 10.1126/science.1229963 · DOI · Paper page
  151. Xiao, 2012, NLRX1 has a tail to tell, Immunity, 36, 311, 10.1016/j.immuni.2012.03.002 · doi:10.1016/j.immuni.2012.03.002
  152. Xu, 2009, Inhibition of RIG-I and MDA5-dependent antiviral response by gC1qR at mitochondria, Proc. Natl. Acad. Sci. USA, 106, 1530, 10.1073/pnas.0811029106 · DOI · Paper page
  153. Yan, 2012, Intrinsic antiviral immunity, Nat. Immunol., 13, 214, 10.1038/ni.2229 · DOI · Paper page
  154. Yanai, 2009, HMGB proteins function as universal sentinels for nucleic-acid-mediated innate immune responses, Nature, 462, 99, 10.1038/nature08512 · DOI · Paper page
  155. Yang, 2010, The cytosolic nucleic acid sensor LRRFIP1 mediates the production of type I interferon via a beta-catenin-dependent pathway, Nat. Immunol., 11, 487, 10.1038/ni.1876 · DOI · Paper page
  156. Yin, 2012, Cyclic di-GMP sensing via the innate immune signaling protein STING, Mol. Cell, 46, 735, 10.1016/j.molcel.2012.05.029 · DOI · Paper page
  157. Yoneyama, 2005, Shared and unique functions of the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity, J. Immunol., 175, 2851, 10.4049/jimmunol.175.5.2851 · DOI · Paper page
  158. Yu, 2012, Dengue virus targets the adaptor protein MITA to subvert host innate immunity, PLoS Pathog., 8, e1002780, 10.1371/journal.ppat.1002780 · DOI · Paper page
  159. Zeng, 2010, Reconstitution of the RIG-I pathway reveals a signaling role of unanchored polyubiquitin chains in innate immunity, Cell, 141, 315, 10.1016/j.cell.2010.03.029 · DOI · Paper page
  160. Zhang, 2008, RIG-I plays a critical role in negatively regulating granulocytic proliferation, Proc. Natl. Acad. Sci. USA, 105, 10553, 10.1073/pnas.0804895105 · DOI
  161. Zhang, 2011, DDX1, DDX21, and DHX36 helicases form a complex with the adaptor molecule TRIF to sense dsRNA in dendritic cells, Immunity, 34, 866, 10.1016/j.immuni.2011.03.027 · DOI · Paper page
  162. Zhang, 2011, The helicase DDX41 senses intracellular DNA mediated by the adaptor STING in dendritic cells, Nat. Immunol., 12, 959, 10.1038/ni.2091 · DOI · Paper page
  163. Zhang, 2011, DHX9 pairs with IPS-1 to sense double-stranded RNA in myeloid dendritic cells, J. Immunol., 187, 4501, 10.4049/jimmunol.1101307 · DOI · Paper page
  164. Zhang, 2012, TRIM32 protein modulates type I interferon induction and cellular antiviral response by targeting MITA/STING protein for K63-linked ubiquitination, J. Biol. Chem., 287, 28646, 10.1074/jbc.M112.362608 · DOI · Paper page
  165. Zhong, 2008, The adaptor protein MITA links virus-sensing receptors to IRF3 transcription factor activation, Immunity, 29, 538, 10.1016/j.immuni.2008.09.003 · DOI · Paper page
  166. Züst, 2011, Ribose 2′-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5, Nat. Immunol., 12, 137, 10.1038/ni.1979 · DOI · Paper page

Cited by

See all 843

Metadata

Authors
Goubau, D., Deddouche, S., & Reis e Sousa, C.
Venue
Immunity
Publisher
Elsevier BV
Published
2013-05
Volume
38
Issue
5
Pages
855-869
ISSN
1074-7613 (ISSN-L)
OpenAlex
W2063310200
Cited by
843
References
14
FWCI
37.13
Type
journal article
Language
en
Open access
bronze
Licence

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: Cytosolic Sensing of Viruses. https://app.cochat.ai/papers/10.1016/j.immuni.2013.05.007
The paper
Goubau, D., Deddouche, S., & Reis e Sousa, C. (2013). Cytosolic Sensing of Viruses. Immunity. https://doi.org/10.1016/j.immuni.2013.05.007

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.