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Cited by 15,355

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

Open access
Sievers, Fabian, Wilm, Andreas, Dineen, David, Gibson, Toby J, Karplus, Kevin, Li, Weizhong, Lopez, Rodrigo, McWilliam, Hamish, Remmert, Michael, Söding, Johannes, Thompson, Julie D, Higgins, Desmond G·2011·Molecular Systems Biology
DOI 10.1038/msb.2011.75
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Abstract

Multiple sequence alignments are fundamental to many sequence analysis methods. Most alignments are computed using the progressive alignment heuristic. These methods are starting to become a bottleneck in some analysis pipelines when faced with data sets of the size of many thousands of sequences. Some methods allow computation of larger data sets while sacrificing quality, and others produce high-quality alignments, but scale badly with the number of sequences. In this paper, we describe a new program called Clustal Omega, which can align virtually any number of protein sequences quickly and that delivers accurate alignments. The accuracy of the package on smaller test cases is similar to that of the high-quality aligners. On larger data sets, Clustal Omega outperforms other packages in terms of execution time and quality. Clustal Omega also has powerful features for adding sequences to and exploiting information in existing alignments, making use of the vast amount of precomputed information in public databases like Pfam.

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Research works printed but not linked: 23

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Cited by

Items 201–273 of 273

Metadata

Authors
Sievers, F., Wilm, A., Dineen, D., Gibson, T. J., Karplus, K., Li, W., Lopez, R., McWilliam, H., Remmert, M., Söding, J., Thompson, J. D., & Higgins, D. G.
Venue
Molecular Systems Biology
Publisher
Springer Science and Business Media LLC
Published
2011-01
Volume
7
Issue
1
Pages
539-539
ISSN
1744-4292 (ISSN-L)
DOI
10.1038/msb.2011.75
OpenAlex
W2127322768
Cited by
15,355
References
2
FWCI
120.85
Type
journal article
Language
en
Open access
gold
Licence

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