Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

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5-methylcytosine promotes mRNA export — NSUN2 as the methyltransferase and ALYREF as an m5C reader

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The transcriptional landscape of polyploid wheat

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The DNA methylation landscape of human early embryos

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SDH mutations establish a hypermethylator phenotype in paraganglioma

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Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity

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Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain

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scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

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Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas

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A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging

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Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

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IDH1(R132H) mutation increases murine haematopoietic progenitors and alters epigenetics

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Transcription Elongation Can Affect Genome 3D Structure

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A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds

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Targeted nanopore sequencing with Cas9-guided adapter ligation

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Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

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Multi-tissue DNA methylation age predictor in mouse

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The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution

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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

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The DNA methyltransferase DNMT3C protects male germ cells from transposon activity

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Chemical reprogramming of human somatic cells to pluripotent stem cells.

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Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells

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Profiling genome-wide DNA methylation

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Glioblastomas acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion

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Senescent cells harbour features of the cancer epigenome

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An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cells

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Simultaneous profiling of 3D genome structure and DNA methylation in single human cells

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Single-cell DNA methylome sequencing of human preimplantation embryos

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DISARM is a widespread bacterial defence system with broad anti-phage activities

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N-methyladenine DNA Modification in Glioblastoma

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Large conserved domains of low DNA methylation maintained by Dnmt3a

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Domains of genome-wide gene expression dysregulation in Down’s syndrome

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Epigenetic resetting of human pluripotency

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Liquid Biopsy of Methylation Biomarkers in Cell-Free DNA

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A Somatically Acquired Enhancer of the Androgen Receptor Is a Noncoding Driver in Advanced Prostate Cancer

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Simultaneous profiling of transcriptome and DNA methylome from a single cell

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The Genome 10K Project: A Way Forward

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Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia

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Highly scalable generation of DNA methylation profiles in single cells

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DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation

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Social environment is associated with gene regulatory variation in the rhesus macaque immune system

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Genetic variability overrides the impact of parental cell type and determines iPSC differentiation potential

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Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)

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Epigenetic dysregulation of enhancers in neurons is associated with Alzheimer’s disease pathology and cognitive symptoms

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Metabolomic identification of subtypes of nonalcoholic steatohepatitis

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Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia

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A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers

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Lentiviral gene therapy for X-linked chronic granulomatous disease

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Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

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Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells

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DNA methylation dynamics during early plant life

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DNA methylation disruption reshapes the hematopoietic differentiation landscape

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Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

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Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer

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TET-mediated DNA demethylation controls gastrulation by regulating Lefty-Nodal signalling

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Delta-like protein 3 expression and therapeutic targeting in neuroendocrine prostate cancer

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Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function

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Human Disease Modeling Reveals Integrated Transcriptional and Epigenetic Mechanisms of NOTCH1 Haploinsufficiency

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Cell of origin determines clinically relevant subtypes of MLL-rearranged AML

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Subtype-specific 3D genome alteration in acute myeloid leukaemia

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A multi-tissue full lifespan epigenetic clock for mice

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DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis

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CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data

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