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Environmental Influences on the Human Microbiome and Implications for Noncommunicable Disease
Abstract
The human microbiome contributes metabolic functions, protects against pathogens, educates the immune system, and through these basic functions, directly or indirectly, affects most of our physiologic functions. Here, we consider the human microbiome and its relationship to several major noncommunicable human conditions, including orodigestive tract cancers, neurologic diseases, diabetes, and obesity. We also highlight the scope of contextual macroenvironmental factors (toxicological and chemical environment, built environment, and socioeconomic environment) and individual microenvironmental factors (smoking, alcohol, and diet) that may push the microbiota toward less healthy or more healthy conditions, influencing the development of these diseases. Last, we highlight current uncertainties and challenges in the study of environmental influences on the human microbiome and implications for understanding noncommunicable disease, suggesting a research agenda to strengthen the scientific evidence base.
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“These variables introduce noise into microbiome studies, complicating the interpretation of findings and reducing reproducibility across populations and settings [238].”
From Pollen–Food Allergy Syndrome: Allergens, Clinical Insights, Diagnostic and Therapeutic Challenges (2024) · cites this paper as [238]
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A metagenome-wide association study of gut microbiota in type 2 diabetes
Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature · doi:10.1038/nature11450 · Cited by 6,762
The gut microbiota as an environmental factor that regulates fat storage
Bäckhed, F., Ding, H., Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A., Semenkovich, C. F., & Gordon, J. I. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407076101 · Cited by 6,245
Gut metagenome in European women with normal, impaired and diabetic glucose control
Karlsson, F. H., Tremaroli, V., Nookaew, I., Bergström, G., Behre, C. J., Fagerberg, B., Nielsen, J., & Bäckhed, F. (2013) · Nature · doi:10.1038/nature12198 · Cited by 3,115
Environment dominates over host genetics in shaping human gut microbiota
Rothschild, D., Weissbrod, O., Barkan, E., Kurilshikov, A., Korem, T., Zeevi, D., Costea, P. I., Godneva, A., Kalka, I. N., Bar, N., et al. (2018) · Nature · doi:10.1038/nature25973 · Cited by 2,859
Influence of diet on the gut microbiome and implications for human health
Singh, R. K., Chang, H.-W., Yan, D., Lee, K. M., Ucmak, D., Wong, K., Abrouk, M., Farahnik, B., Nakamura, M., Zhu, T. H., et al. (2017) · Journal of Translational Medicine · doi:10.1186/s12967-017-1175-y · Cited by 2,599
Microbiota and SCFA in lean and overweight healthy subjects
Schwiertz, A., Taras, D., Schäfer, K., Beijer, S., Bos, N. A., Donus, C., & Hardt, P. D. (2010) · Obesity · doi:10.1038/oby.2009.167 · Cited by 2,457
Body-mass index and mortality among 1.46 million white adults
Berrington de Gonzalez, A., Hartge, P., Cerhan, J. R., Flint, A. J., Hannan, L., MacInnis, R. J., Moore, S. C., Tobias, G. S., Anton-Culver, H., Freeman, L. B., et al. (2010) · New England Journal of Medicine · doi:10.1056/nejmoa1000367 · Cited by 2,317
Periodontitis: a polymicrobial disruption of host homeostasis
Darveau, R. P. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2337 · Cited by 1,688
High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity
Hildebrandt, M. A., Hoffmann, C., Sherrill–Mix, S. A., Keilbaugh, S. A., Hamady, M., Chen, Y., Knight, R., Ahima, R. S., Bushman, F., & Wu, G. D. (2009) · Gastroenterology · doi:10.1053/j.gastro.2009.08.042 · Cited by 1,576 · cited 1×
“These experimental findings lead to the question of whether the microbial composition of the gut confers susceptibility to weight gain in humans, whether genetically determined (58) or diet induced (44, 70, 125).”
BackgroundExposure to Environmental Microorganisms and Childhood Asthma
Ege, M. J., Mayer, M., Normand, A.-C., Genuneit, J., Cookson, W. O. C. M., Braun-Fahrländer, C., Heederik, D., Piarroux, R., & von Mutius, E. (2011) · New England Journal of Medicine · doi:10.1056/nejmoa1007302 · Cited by 1,529
The central nervous system and the gut microbiome
Sharon, G., Sampson, T. R., Geschwind, D. H., & Mazmanian, S. K. (2016) · Cell · doi:10.1016/j.cell.2016.10.027 · Cited by 1,513
The Integrative Human Microbiome Project
The Integrative HMP (iHMP) Research Network Consortium, Proctor, L. M., Creasy, H. H., Fettweis, J. M., Lloyd-Price, J., Mahurkar, A., Zhou, W., Buck, G. A., Snyder, M. P., Strauss, J. F., et al. (2019) · Nature · doi:10.1038/s41586-019-1238-8 · Cited by 1,381
Control of brain development, function, and behavior by the microbiome
Sampson, T. R., & Mazmanian, S. K. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.011 · Cited by 1,093
Chemical transformation of xenobiotics by the human gut microbiota
Koppel, N., Maini Rekdal, V., & Balskus, E. P. (2017) · Science · doi:10.1126/science.aag2770 · Cited by 1,080
Gupta, V. K., Paul, S., & Dutta, C. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01162 · Cited by 1,019
Fat, fibre and cancer risk in African Americans and rural Africans
O’Keefe, S. J. D., Li, J. V., Lahti, L., Ou, J., Carbonero, F., Mohammed, K., Posma, J. M., Kinross, J., Wahl, E., Ruder, E., et al. (2015) · Nature Communications · doi:10.1038/ncomms7342 · Cited by 982
Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children
Stein, M. M., Hrusch, C. L., Gozdz, J., Igartua, C., Pivniouk, V., Murray, S. E., Ledford, J. G., Marques dos Santos, M., Anderson, R. L., Metwali, N., et al. (2016) · New England Journal of Medicine · doi:10.1056/nejmoa1508749 · Cited by 939
Armougom, F., Henry, M., Vialettes, B., Raccah, D., & Raoult, D. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007125 · Cited by 905
Meta‐analyses of human gut microbes associated with obesity and IBD
Walters, W. A., Xu, Z., & Knight, R. (2014) · FEBS Letters · doi:10.1016/j.febslet.2014.09.039 · Cited by 836
Gut microbiome interactions with drug metabolism, efficacy, and toxicity
Wilson, I. D., & Nicholson, J. K. (2017) · Translational Research · doi:10.1016/j.trsl.2016.08.002 · Cited by 656
Cigarette smoking and the oral microbiome in a large study of American adults
Wu, J., Peters, B. A., Dominianni, C., Zhang, Y., Pei, Z., Yang, L., Ma, Y., Purdue, M. P., Jacobs, E. J., Gapstur, S. M., et al. (2016) · The ISME Journal · doi:10.1038/ismej.2016.37 · Cited by 572
Self-citationGut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults
Tap, J., Furet, J., Bensaada, M., Philippe, C., Roth, H., Rabot, S., Lakhdari, O., Lombard, V., Henrissat, B., Corthier, G., et al. (2015) · Environmental Microbiology · doi:10.1111/1462-2920.13006 · Cited by 397
Microbiota conservation and BMI signatures in adult monozygotic twins
Tims, S., Derom, C., Jonkers, D. M., Vlietinck, R., Saris, W. H., Kleerebezem, M., de Vos, W. M., & Zoetendal, E. G. (2013) · The ISME Journal · doi:10.1038/ismej.2012.146 · Cited by 367
A Taxonomic Signature of Obesity in the Microbiome? Getting to the Guts of the Matter
Finucane, M. M., Sharpton, T. J., Laurent, T. J., & Pollard, K. S. (2014) · PLoS ONE · doi:10.1371/journal.pone.0084689 · Cited by 321
Lin, A., Bik, E. M., Costello, E. K., Dethlefsen, L., Haque, R., Relman, D. A., & Singh, U. (2013) · PLoS ONE · doi:10.1371/journal.pone.0053838 · Cited by 314
Hajishengallis, G., & Lamont, R. J. (2016) · Trends in Microbiology · doi:10.1016/j.tim.2016.02.010 · Cited by 275 · cited 1×
“In vitro and animal studies also point to possible mechanisms by which oral microbiota contribute to oral carcinogenesis, including inhibition of apoptosis, activation of cell proliferation, promotion of cellular invasion, induction of chronic inflammation (80, 84), and cooperation of bacteria and fungi in oral polymi…”
BackgroundAlcohol Consumption Increases Periodontitis Risk
Pitiphat, W., Merchant, A. T., Rimm, E. B., & Joshipura, K. J. (2003) · Journal of Dental Research · doi:10.1177/154405910308200704 · Cited by 155 · cited 2×
“In addition to its direct effects, alcohol may indirectly impact the oral microbiota (31, 65, 99, 119) through disturbing the host defense system (77, 83, 114, 115), subsequently resulting in host-mediated periodontitis (11, 88).”
Background
Research works printed but not linked: 117
- 10.3389/fphar.2020.00390 · DOI
- 10.1056/NEJMoa055643 · DOI
- 10.1001/jamaoncol.2015.5504 · DOI
- 10.1007/s10552-011-9892-7 · DOI
- 10.1093/jnci/djt300 · DOI · Paper page
- 10.1097/00006842-199505000-00003 · DOI
- 10.1136/bmj.d6617 · DOI · Paper page
- 10.1038/s41586-019-1608-2 · DOI · Paper page
- 10.1111/j.1600-0757.2012.00450.x · DOI
- 10.1158/1940-6207.CAPR-08-0024 · DOI
- 10.1016/S1470-2045(15)00444-1 · DOI
- 10.1016/j.jaci.2005.12.001 · DOI · Paper page
- 10.1021/acs.est.8b04457 · DOI
- 10.1002/hep.24423 · DOI · Paper page
- 10.1093/ajcn/88.4.894 · DOI
- 10.3390/nu7010017 · DOI · Paper page
- 10.1080/19490976.2018.1526581 · DOI
- 10.1016/j.cgh.2018.08.067 · DOI
- 10.1158/2159-8290.CD-14-0501 · DOI
- 10.1038/s41579-019-0242-1 · DOI
- 10.3390/nu10121833 · DOI
- 10.1038/ijo.2008.155 · DOI · Paper page
- 10.1146/annurev-immunol-051116-052133 · DOI · Paper page
- 10.1097/00130832-200404000-00008 · DOI
- 10.1186/s40168-017-0285-3 · DOI
- 10.1067/moe.2001.116814 · DOI
- Engen PA, 2015, Alcohol Res, 37, 223
- 10.1186/s40168-018-0559-4 · DOI
- 10.1136/gutjnl-2016-312580 · DOI · Paper page
- 10.1038/s41579-018-0065-5 · DOI
- 10.1186/s13073-018-0609-3 · DOI
- 10.1016/j.ebiom.2019.11.051 · DOI
- 10.3389/fgene.2018.00212 · DOI
- 10.1128/mSphere.00089-16 · DOI
- 10.1001/jamaoncol.2017.4777 · DOI · Paper page
- 10.1038/nature11234 · DOI · Paper page
- 10.3109/07388558909036741 · DOI · Paper page
- 10.1016/j.archoralbio.2012.07.017 · DOI
- 10.1111/j.1600-051X.2008.01210.x · DOI
- 10.1590/S1806-83242007000200002 · DOI
- 10.1128/AEM.64.8.2914-2919.1998 · DOI
- 10.1016/j.chom.2013.07.007 · DOI · Paper page
- 10.1093/carcin/8.10.1543 · DOI
- 10.1126/science.1254529 · DOI
- 10.1097/MOG.0b013e328333d751 · DOI
- 10.1073/pnas.0504978102 · DOI · Paper page
- 10.1038/4441022a · DOI · Paper page
- 10.1073/pnas.1521291113 · DOI · Paper page
- 10.1186/gm459 · DOI
- Macgregor ID., 1989, Clin. Prev. Dent., 11, 3
- 10.1186/1475-2891-8-49 · DOI
- Maier H, 1988, Klinische Wochenschr, 66, 140
- 10.1016/S0140-6736(06)68976-9 · DOI
- 10.1111/omi.12024 · DOI
- 10.1016/j.oooo.2013.02.009 · DOI
- 10.1371/journal.pone.0148952 · DOI
- 10.1136/gut.2010.215665 · DOI
- 10.1016/j.envpol.2018.04.130 · DOI
- 10.1152/ajpgi.00380.2011 · DOI · Paper page
- 10.3390/cancers10010011 · DOI
- 10.1186/s40168-019-0620-y · DOI
- 10.1093/dnares/dsw002 · DOI
- 10.1111/prd.12063 · DOI · Paper page
- 10.1111/j.1600-0714.1999.tb02027.x · DOI
- 10.1093/carcin/13.5.783 · DOI
- 10.1080/20002297.2018.1563410 · DOI
- 10.1002/ijc.21731 · DOI
- 10.1016/j.cmet.2014.07.002 · DOI
- 10.1002/jbmr.5650070405 · DOI
- 10.3402/jom.v8.32762 · DOI
- 10.1186/s40168-016-0218-6 · DOI
- 10.1038/s41598-018-28126-1 · DOI
- 10.1158/0008-5472.CAN-17-1296 · DOI · Paper page
- 10.1158/2159-8290.CD-17-1134 · DOI · Paper page
- 10.3945/ajcn.111.027847 · DOI · Paper page
- 10.1126/science.1241214 · DOI · Paper page
- 10.1201/b13973-31 · DOI
- 10.1111/cei.12269 · DOI
- 10.1002/ijc.20293 · DOI
- 10.1007/s00203-018-1506-2 · DOI
- 10.1177/10454411940050030201 · DOI · Paper page
- 10.1016/j.envint.2020.106084 · DOI
- 10.1186/1471-2180-14-61 · DOI
- 10.1186/s40168-019-0686-6 · DOI
- 10.2105/AJPH.2014.302156 · DOI
- 10.1128/JCM.00932-09 · DOI
- 10.3390/nu11051155 · DOI
- 10.1016/j.cmet.2014.07.003 · DOI
- 10.1038/nri803 · DOI
- 10.1038/nrmicro.2016.17 · DOI · Paper page
- Sutton D, 1997, J. Pharmacol. Exp. Ther., 282, 294
- 10.1093/alcalc/34.6.830 · DOI
- 10.1111/j.1530-0277.1996.tb05269.x · DOI
- 10.1158/0008-5472.CAN-13-1865 · DOI · Paper page
- 10.1038/srep22164 · DOI · Paper page
- Tenovuo J., 1998, Scand., 56, 250
- 10.1111/j.1600-051X.2004.00503.x · DOI
- 10.1186/s12866-014-0250-2 · DOI
- 10.1097/PPO.0000000000000052 · DOI
- 10.1002/ana.24901 · DOI · Paper page
- 10.1016/j.chom.2008.02.015 · DOI · Paper page
- 10.1038/nature07540 · DOI · Paper page
- 10.1038/nature06244 · DOI · Paper page
- 10.1038/nature05414 · DOI · Paper page
- 10.1016/j.tem.2017.05.001 · DOI
- 10.1126/science.aay3164 · DOI
- 10.1016/j.mib.2006.12.004 · DOI
- 10.1146/annurev-nutr-071813-105315 · DOI
- WHO (World Health Organ.), 2000, Obesity: preventing and managing the global epidemic. Report of a WHO consultation
- WHO (World Health Organ.), 2012, IARC Monographs on the Evaluation of Carcinogenic Risks to Humans
- 10.1126/science.1208344 · DOI · Paper page
- 10.1038/nm.4345 · DOI · Paper page
- 10.1016/j.chom.2020.02.015 · DOI
- 10.1038/s41598-019-41894-8 · DOI
- 10.1016/j.cell.2015.11.001 · DOI · Paper page
- 10.1038/s41586-019-1236-x · DOI · Paper page
- 10.3390/nu10030365 · DOI · Paper page
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Greenspace and human microbiota: a systematic review
Zhang, Y.-D., Zhou, G.-L., Wang, L., Browning, M. H. E. M., Markevych, I., Heinrich, J., Knibbs, L. D., Zhao, T., Ding, Y., Chen, S., et al. (2024) · Environment International · doi:10.1016/j.envint.2024.108662 · Cited by 32
Pollen–Food Allergy Syndrome: Allergens, Clinical Insights, Diagnostic and Therapeutic Challenges
Haidar, L., Bănărescu, C. F., Uța, C., Moldovan, S. I., Zimbru, E.-L., Zimbru, R.-I., Ciurariu, E., Georgescu, M., & Panaitescu, C. (2024) · Applied Sciences · doi:10.3390/app15010066 · Cited by 21
The Microbiome, Metabolism, and Networks in Precision Nutrition
Mensah, G. E., Maseng, M. G., Allard, S., & Gilbert, J. A. (2024) · Precision Nutrition · doi:10.1016/b978-0-443-15315-0.00011-0 · Cited by 2
Metadata
- Authors
- Ahn, J., & Hayes, R. B.
- Affiliations
- Department of Population Health, Grossman School of Medicine, New York University, New York, NY 10016, USA
- Venue
- Annual Review of Public Health
- Publisher
- Annual Reviews
- Published
- 2021-04-01
- Volume
- 42
- Issue
- 1
- Pages
- 277-292
- ISSN
- 0163-7525
- 1545-2093
- PMC
- PMC8641399
- Cited by
- 186
- References
- 27
- Language
- en
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