microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder
Abstract
Background: microRNAs (miRNAs) are small, noncoding RNA molecules that are now thought to regulate the expression of many mRNAs. They have been implicated in the etiology of a variety of complex diseases, including Tourette's syndrome, Fragile × syndrome, and several types of cancer. Results: We hypothesized that schizophrenia might be associated with altered miRNA profiles. To investigate this possibility we compared the expression of 264 human miRNAs from postmortem prefrontal cortex tissue of individuals with schizophrenia (n = 13) or schizoaffective disorder (n = 2) to tissue of 21 psychiatrically unaffected individuals using a custom miRNA microarray. Allowing a 5% false discovery rate, we found that 16 miRNAs were differentially expressed in prefrontal cortex of patient subjects, with 15 expressed at lower levels (fold change 0.63 to 0.89) and 1 at a higher level (fold change 1.77) than in the psychiatrically unaffected comparison subjects. The expression levels of 12 selected miRNAs were also determined by quantitative RT-PCR in our lab. For the eight miRNAs distinguished by being expressed at lower microarray levels in schizophrenia samples versus comparison samples, seven were also expressed at lower levels with quantitative RT-PCR. Conclusion: This study is the first to find altered miRNA profiles in postmortem prefrontal cortex from schizophrenia patients.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Altered miRNA profiles have been reported in the prefrontal cortex of patients with schizophrenia and schizoaffective disorder.
“while another study has reported altered miRNA profiles in the prefrontal cortex of patients with schizophrenia and schizoaffective disorder (Perkins et al. 2007).”
From MicroRNA expression in the adult mouse central nervous system (2008) · cites this paper as Perkins et al. 2007
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
Livak, K. J., & Schmittgen, T. D. (2001) · Methods · doi:10.1006/meth.2001.1262 · Cited by 180,860 · see citing works
DAVID: Database for Annotation, Visualization, and Integrated Discovery
Dennis, G., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., & Lempicki, R. A. (2003) · Genome Biology · doi:10.1186/gb-2003-4-5-p3 · Cited by 9,327 · see citing works
Schizophrenia genes, gene expression, and neuropathology: on the matter of their convergence
Harrison, P. J., & Weinberger, D. R. (2005) · Molecular Psychiatry · doi:10.1038/sj.mp.4001558 · Cited by 2,020 · see citing works
Sempere, L. F., Freemantle, S., Pitha-Rowe, I., Moss, E., Dmitrovsky, E., & Ambros, V. (2004) · Genome Biology · doi:10.1186/gb-2004-5-3-r13 · Cited by 1,578 · see citing works
A microRNA array reveals extensive regulation of microRNAs during brain development
KRICHEVSKY, A. M., KING, K. S., DONAHUE, C. P., KHRAPKO, K., & KOSIK, K. S. (2003) · RNA · doi:10.1261/rna.5980303 · Cited by 1,040 · see citing works
Shi, Y., & Ethell, I. M. (2006) · The Journal of Neuroscience · doi:10.1523/jneurosci.4091-05.2006 · Cited by 200 · see citing works
Flagged first, then by citations
Research works printed but not linked: 47
- Rossler W Salize HJ van Os J Riecher-Rossler A Size of burden of schizophrenia and psychotic disorders. Eur Neuropsychopharmacol 2005 15 399 409 15925493 10.1016/j.euroneuro.2005.04.009 · DOI
- Sullivan PF The genetics of schizophrenia. PLoS Med 2005 2 e212 16033310 10.1371/journal.pmed.0020212 PMC1181880 · DOI
- Prabakaran S Swatton JE Ryan MM Huffaker SJ Huang JT Griffin JL Wayland M Freeman T Dudbridge F Lilley KS Mitochondrial dysfunction in schizophrenia: evidence for compromised brain metabolism and oxidative stress. Mol Psychiatry 2004 9 684 697 15098003 10.1038/sj.mp.4001532 · DOI
- Dracheva S Elhakem SL McGurk SR Davis KL Haroutunian V GAD67 and GAD65 mRNA and protein expression in cerebrocortical regions of elderly patients with schizophrenia. J Neurosci Res 2004 76 581 592 15114630 10.1002/jnr.20122 · DOI
- Denli AM Tops BB Plasterk RH Ketting RF Hannon GJ Processing of primary microRNAs by the microprocessor complex. Nature 2004 432 231 235 15531879 10.1038/nature03049 · DOI · Paper page
- Bentwich I Prediction and validation of microRNAs and their targets. FEBS Lett 2005 579 5904 5910 16214134 10.1016/j.febslet.2005.09.040 · DOI
- Berezikov E Guryev V van de Belt J Wienholds E Plasterk RH Cuppen E Phylogenetic shadowing and computational identification of human microRNA genes. Cell 2005 120 21 24 15652478 10.1016/j.cell.2004.12.031 · DOI · Paper page
- Lewis BP Burge CB Bartel DP Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005 120 15 20 15652477 10.1016/j.cell.2004.12.035 · DOI · Paper page
- Shcherbata HR Hatfield S Ward EJ Reynolds S Fischer KA Ruohola-Baker H The microRNA pathway plays a regulatory role in stem cell division. Cell Cycle 2006 5 172 175 16357538
- Chen CZ Li L Lodish HF Bartel DP MicroRNAs modulate hematopoietic lineage differentiation. Science 2004 303 83 86 14657504 10.1126/science.1091903 · DOI · Paper page
- Muljo SA Ansel KM Kanellopoulou C Livingston DM Rao A Rajewsky K Aberrant T cell differentiation in the absence of Dicer. J Exp Med 2005 202 261 269 16009718 10.1084/jem.20050678 PMC2212998 · DOI
- Esau C Kang X Peralta E Hanson E Marcusson EG Ravichandran LV Sun Y Koo S Perera RJ Jain R MicroRNA-143 regulates adipocyte differentiation. J Biol Chem 2004 279 52361 52365 15504739 10.1074/jbc.C400438200 · DOI
- Chen JF Mandel EM Thomson JM Wu Q Callis TE Hammond SM Conlon FL Wang DZ The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 2006 38 228 233 16380711 10.1038/ng1725 PMC2538576 · DOI
- Poy MN Eliasson L Krutzfeldt J Kuwajima S Ma X Macdonald PE Pfeffer S Tuschl T Rajewsky N Rorsman P A pancreatic islet-specific microRNA regulates insulin secretion. Nature 2004 432 226 230 15538371 10.1038/nature03076 · DOI · Paper page
- Xu P Guo M Hay BA MicroRNAs and the regulation of cell death. Trends Genet 2004 20 617 624 15522457 10.1016/j.tig.2004.09.010 · DOI
- Giraldez AJ Cinalli RM Glasner ME Enright AJ Thomson JM Baskerville S Hammond SM Bartel DP Schier AF MicroRNAs regulate brain morphogenesis in zebrafish. Science 2005 308 833 838 15774722 10.1126/science.1109020 · DOI · Paper page
- Schratt GM Tuebing F Nigh EA Kane CG Sabatini ME Kiebler M Greenberg ME A brain-specific microRNA regulates dendritic spine development. Nature 2006 439 283 289 16421561 10.1038/nature04367 · DOI · Paper page
- Vo N Klein ME Varlamova O Keller DM Yamamoto T Goodman RH Impey S A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis. Proc Natl Acad Sci USA 2005 102 16426 16431 16260724 10.1073/pnas.0508448102 PMC1283476 · DOI
- Hammond SM MicroRNA therapeutics: a new niche for antisense nucleic acids. Trends Mol Med 2006 12 99 101 16473043 10.1016/j.molmed.2006.01.004 · DOI
- Abelson JF Kwan KY O'Roak BJ Baek DY Stillman AA Morgan TM Mathews CA Pauls DL Rasin MR Gunel M Sequence variants in SLITRK1 are associated with Tourette's syndrome. Science 2005 310 317 320 16224024 10.1126/science.1116502 · DOI · Paper page
- Bagni C Greenough WT From mRNP trafficking to spine dysmorphogenesis: the roots of fragile X syndrome. Nat Rev Neurosci 2005 6 376 387 15861180 10.1038/nrn1667 · DOI · Paper page
- Jin P Alisch RS Warren ST RNA and microRNAs in fragile X mental retardation. Nat Cell Biol 2004 6 1048 1053 15516998 10.1038/ncb1104-1048 · DOI
- Caudy AA Myers M Hannon GJ Hammond SM Fragile X-related protein and VIG associate with the RNA interference machinery. Genes Dev 2002 16 2491 2496 12368260 10.1101/gad.1025202 PMC187452 · DOI · Paper page
- Perkins DO Jeffries C Sullivan P Expanding the 'central dogma': the regulatory role of nonprotein coding genes and implications for the genetic liability to schizophrenia. Mol Psychiatry 2005 10 69 78 15381925 10.1038/sj.mp.4001577 · DOI
- Nelson PT Baldwin DA Kloosterman WP Kauppinen S Plasterk RH Mourelatos Z RAKE and LNA-ISH reveal microRNA expression and localization in archival human brain. Rna 2006 12 187 191 16373485 10.1261/rna.2258506 PMC1370897 · DOI · Paper page
- Thomson JM Newman M Parker JS Morin-Kensicki EM Wright T Hammond SM Extensive post-transcriptional regulation of microRNAs and its implications for cancer. Genes Dev 2006 20 2202 2207 16882971 10.1101/gad.1444406 PMC1553203 · DOI · Paper page
- Buratti E Baralle FE Influence of RNA secondary structure on the pre-mRNA splicing process. Mol Cell Biol 2004 24 10505 10514 15572659 10.1128/MCB.24.24.10505-10514.2004 PMC533984 · DOI
- Takamizawa J Konishi H Yanagisawa K Tomida S Osada H Endoh H Harano T Yatabe Y Nagino M Nimura Y Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival. Cancer Res 2004 64 3753 3756 15172979 10.1158/0008-5472.CAN-04-0637 · DOI
- Lu J Getz G Miska EA Alvarez-Saavedra E Lamb J Peck D Sweet-Cordero A Ebert BL Mak RH Ferrando AA MicroRNA expression profiles classify human cancers. Nature 2005 435 834 838 15944708 10.1038/nature03702 · DOI
- Debbane M Glaser B David MK Feinstein C Eliez S Psychotic symptoms in children and adolescents with 22q11.2 deletion syndrome: Neuropsychological and behavioral implications. Schizophr Res 2006 84 187 193 16545541 10.1016/j.schres.2006.01.019 · DOI
- Bassett AS Chow EW AbdelMalik P Gheorghiu M Husted J Weksberg R The schizophrenia phenotype in 22q11 deletion syndrome. Am J Psychiatry 2003 160 1580 1586 12944331 10.1176/appi.ajp.160.9.1580 PMC3276594 · DOI
- Karayiorgou M Gogos JA The molecular genetics of the 22q11-associated schizophrenia. Brain Res Mol Brain Res 2004 132 95 104 15582150 10.1016/j.molbrainres.2004.09.029 · DOI
- Horowitz A Shifman S Rivlin N Pisante A Darvasi A A survey of the 22q11 microdeletion in a large cohort of schizophrenia patients. Schizophr Res 2005 73 263 267 15653270 10.1016/j.schres.2004.02.008 · DOI
- Sethupathy P Corda B Hatzigeorgiou AG TarBase: A comprehensive database of experimentally supported animal microRNA targets. Rna 2006 12 192 197 16373484 10.1261/rna.2239606 PMC1370898 · DOI
- Enright AJ John B Gaul U Tuschl T Sander C Marks DS MicroRNA targets in Drosophila. Genome Biol 2003 5 R1 14709173 10.1186/gb-2003-5-1-r1 PMC395733 · DOI · Paper page
- Thomas GM Huganir RL MAPK cascade signalling and synaptic plasticity. Nat Rev Neurosci 2004 5 173 183 14976517 10.1038/nrn1346 · DOI · Paper page
- Nahorski SR Young KW John Challiss RA Nash MS Visualizing phosphoinositide signalling in single neurons gets a green light. Trends Neurosci 2003 26 444 452 12900176 10.1016/S0166-2236(03)00178-4 · DOI
- Tada T Sheng M Molecular mechanisms of dendritic spine morphogenesis. Curr Opin Neurobiol 2006 16 95 101 16361095 10.1016/j.conb.2005.12.001 · DOI · Paper page
- Sutton MA Schuman EM Local translational control in dendrites and its role in long-term synaptic plasticity. J Neurobiol 2005 64 116 131 15883999 10.1002/neu.20152 · DOI
- Igloi GL Nonradioactive labeling of RNA. Anal Biochem 1996 233 124 129 8789156 10.1006/abio.1996.0016 · DOI
- Thomson JM Parker J Perou CM Hammond SM A custom microarray platform for analysis of microRNA gene expression. Nat Methods 2004 1 47 53 15782152 10.1038/nmeth704 · DOI
- Troyanskaya O Cantor M Sherlock G Brown P Hastie T Tibshirani R Botstein D Altman RB Missing value estimation methods for DNA microarrays. Bioinformatics 2001 17 520 525 11395428 10.1093/bioinformatics/17.6.520 · DOI · Paper page
- Li C Hung Wong W Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol 2001 2 RESEARCH0032 11532216 PMC55329
- Tusher VG Tibshirani R Chu G Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001 98 5116 5121 11309499 10.1073/pnas.091062498 PMC33173 · DOI · Paper page
- Saldanha AJ Java Treeview - extensible visualization of microarray data. Bioinformatics 2004 20 3246 3248 15180930 10.1093/bioinformatics/bth349 · DOI
- Kent WJ Sugnet CW Furey TS Roskin KM Pringle TH Zahler AM Haussler D The human genome browser at UCSC. Genome Res 2002 12 996 1006 12045153 10.1101/gr.229102. Article published online before print in May 2002 PMC186604 · DOI · Paper page
- Shi R Chiang VL Facile means for quantifying microRNA expression by real-time PCR. Biotechniques 2005 39 519 525 16235564
Cited by
Sorted by citations
MicroRNA as Biomarkers and Diagnostics
Wang, J., Chen, J., & Sen, S. (2016) · Journal of Cellular Physiology · doi:10.1002/jcp.25056 · Cited by 793 · see citing works
MicroRNA expression in the adult mouse central nervous system
Bak, M., Silahtaroglu, A., Møller, M., Christensen, M., Rath, M. F., Skryabin, B., Tommerup, N., & Kauppinen, S. (2008) · RNA · doi:10.1261/rna.783108 · Cited by 463 · see citing works
Alterations of the microRNA network cause neurodegenerative disease
Hébert, S. S., & De Strooper, B. (2009) · Trends in Neurosciences · doi:10.1016/j.tins.2008.12.003 · Cited by 452 · see citing works
MicroRNAs in neuronal function and dysfunction
Im, H.-I., & Kenny, P. J. (2012) · Trends in Neurosciences · doi:10.1016/j.tins.2012.01.004 · Cited by 399 · see citing works
Smalheiser, N. R., Lugli, G., Rizavi, H. S., Torvik, V. I., Turecki, G., & Dwivedi, Y. (2012) · PLoS ONE · doi:10.1371/journal.pone.0033201 · Cited by 324 · see citing works
Mellios, N., Huang, H.-S., Baker, S. P., Galdzicka, M., Ginns, E., & Akbarian, S. (2009) · Biological Psychiatry · doi:10.1016/j.biopsych.2008.11.019 · Cited by 266 · see citing works
Identification of Dynamically Regulated MicroRNA and mRNA Networks in Developing Oligodendrocytes
Lau, P., Verrier, J. D., Nielsen, J. A., Johnson, K. R., Notterpek, L., & Hudson, L. D. (2008) · The Journal of Neuroscience · doi:10.1523/jneurosci.1932-08.2008 · Cited by 252 · see citing works
Blood microRNA changes in depressed patients during antidepressant treatment
Bocchio-Chiavetto, L., Maffioletti, E., Bettinsoli, P., Giovannini, C., Bignotti, S., Tardito, D., Corrada, D., Milanesi, L., & Gennarelli, M. (2013) · European Neuropsychopharmacology · doi:10.1016/j.euroneuro.2012.06.013 · Cited by 238 · see citing works
MicroRNA Expression Aberration as Potential Peripheral Blood Biomarkers for Schizophrenia
Lai, C.-Y., Yu, S.-L., Hsieh, M. H., Chen, C.-H., Chen, H.-Y., Wen, C.-C., Huang, Y.-H., Hsiao, P.-C., Hsiao, C. K., Liu, C.-M., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0021635 · Cited by 228 · see citing works
General Principals of miRNA Biogenesis and Regulation in the Brain
O'Carroll, D., & Schaefer, A. (2013) · Neuropsychopharmacology · doi:10.1038/npp.2012.87 · Cited by 205 · see citing works
Smigielski, L., Jagannath, V., Rössler, W., Walitza, S., & Grünblatt, E. (2020) · Molecular Psychiatry · doi:10.1038/s41380-019-0601-3 · Cited by 168 · see citing works
Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells
Topol, A., Zhu, S., Hartley, B. J., English, J., Hauberg, M. E., Tran, N., Rittenhouse, C. A., Simone, A., Ruderfer, D. M., Johnson, J., et al. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.03.090 · Cited by 122 · see citing works
The Pattern of Cortical Dysfunction in a Mouse Model of a Schizophrenia-Related Microdeletion
Fénelon, K., Xu, B., Lai, C. S., Mukai, J., Markx, S., Stark, K. L., Hsu, P.-K., Gan, W.-B., Fischbach, G. D., MacDermott, A. B., et al. (2013) · The Journal of Neuroscience · doi:10.1523/jneurosci.1611-13.2013 · Cited by 116 · see citing works
The emerging role of microRNAs in schizophrenia and autism spectrum disorders
Mellios, N., & Sur, M. (2012) · Frontiers in Psychiatry · doi:10.3389/fpsyt.2012.00039 · Cited by 120 · see citing works
Prata, J., Santos, S. G., Almeida, M. I., Coelho, R., & Barbosa, M. A. (2017) · Journal of Neuroinflammation · doi:10.1186/s12974-017-0938-y · Cited by 115 · see citing works
Lopez, J. P., Kos, A., & Turecki, G. (2018) · Current Opinion in Psychiatry · doi:10.1097/yco.0000000000000379 · Cited by 108 · see citing works
Xu, Y., Liu, H., Li, F., Sun, N., Ren, Y., Liu, Z., Cao, X., Wang, Y., Liu, P., & Zhang, K. (2010) · Journal of Affective Disorders · doi:10.1016/j.jad.2010.05.019 · Cited by 99 · see citing works
Brand, S., Moller, M., & Harvey, B. (2015) · Current Neuropharmacology · doi:10.2174/1570159x13666150307004545 · Cited by 95 · see citing works
Molecular Profiles of Pyramidal Neurons in the Superior Temporal Cortex in Schizophrenia
Pietersen, C. Y., Mauney, S. A., Kim, S. S., Lim, M. P., Rooney, R. J., Goldstein, J. M., Petryshen, T. L., Seidman, L. J., Shenton, M. E., McCarley, R. W., et al. (2014) · Journal of Neurogenetics · doi:10.3109/01677063.2014.882918 · Cited by 87 · see citing works
Down-regulated expression of microRNA-338-5p contributes to neuropathology in Alzheimer’s disease.
Qian, Q., Zhang, J., He, F.-P., Bao, W.-X., Zheng, T.-T., Zhou, D.-M., Pan, H.-Y., Zhang, H., Zhang, X.-Q., He, X., et al. (2019) · The FASEB Journal · doi:10.1096/fj.201801846r · Cited by 70 · see citing works
Segaran, R. C., Chan, L. Y., Wang, H., Sethi, G., & Tang, F. R. (2020) · Current Medicinal Chemistry · doi:10.2174/0929867327666200121122910 · Cited by 42 · see citing works
O’Tuathaigh, C. M. P., Fumagalli, F., Desbonnet, L., Perez-Branguli, F., Moloney, G., Loftus, S., O’Leary, C., Petit, E., Cox, R., Tighe, O., et al. (2017) · Schizophrenia Bulletin · doi:10.1093/schbul/sbw120 · Cited by 22 · see citing works
de Bartolomeis, A., Iasevoli, F., Tomasetti, C., & Buonaguro, E. F. (2015) · Molecular Neurobiology · doi:10.1007/s12035-014-8962-8 · Cited by 21 · see citing works
- Authors
- Perkins, D. O., Jeffries, C. D., Jarskog, L. F., Thomson, J. M., Woods, K., Newman, M. A., Parker, J. S., Jin, J., & Hammond, S. M.
- Venue
- Genome Biology
- Published
- 2007-02-27
- Volume
- 8
- Issue
- 2
- ISSN
- 1474-760X
- PMC
- PMC1852419
- Cited by
- 479
- References
- 6
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review