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Rapid Automated Algorithm for Aligning and Reslicing PET Images
Abstract
A computer algorithm for the three-dimensional (3D) alignment of PET images is described. To align two images, the algorithm calculates the ratio of one image to the other on a voxel-by-voxel basis and then iteratively moves the images relative to one another to minimize the variance of this ratio across voxels. Since the method relies on anatomic information in the images rather than on external fiducial markers, it can be applied retrospectively. Validation studies using a 3D brain phantom show that the algorithm aligns images acquired at a wide variety of positions with maximum positional errors that are usually less than the width of a voxel (1.745 mm). Simulated cortical activation sites do not interfere with alignment. Global errors in quantitation from realignment are less than 2%. Regional errors due to partial volume effects are largest when the gantry is rotated by large angles or when the bed is translated axially by one-half the interplane distance. To minimize such partial volume effects, the algorithm can be used prospectively, during acquisition, to reposition the scanner gantry and bed to match an earlier study. Computation requires 3-6 min on a Sun SPARCstation 2.
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Items 101–151 of 151
Grafton, S. T., Woods, R. P., & Tyszka, M. (1994) · Human Brain Mapping · doi:10.1002/hbm.460010307 · Cited by 214
Self-citationFunctional anatomy of human auditory attention studied with PET
Tzourio, N., El Massioui, F., Crivello, F., Joliot, M., Renault, B., & Mazoyer, B. (1997) · NeuroImage · doi:10.1006/nimg.1996.0252 · Cited by 212
Echoplanar BOLD fMRI of brain activation induced by concurrent transcranial magnetic stimulation
BOHNING, D. E., SHASTRI, A., NAHAS, Z., LORBERBAUM, J. P., ANDERSEN, S. W., DANNELS, W. R., HAXTHAUSEN, E.-U., VINCENT, D. J., & GEORGE, M. S. (1998) · Investigative Radiology · doi:10.1097/00004424-199806000-00004 · Cited by 210
Cannon, D. M., Ichise, M., Fromm, S. J., Nugent, A. C., Rollis, D., Gandhi, S. K., Klaver, J. M., Charney, D. S., Manji, H. K., & Drevets, W. C. (2006) · Biological Psychiatry · doi:10.1016/j.biopsych.2006.05.005 · Cited by 197
Medial cortex activity, self-reflection and depression
Johnson, M. K., Nolen-Hoeksema, S., Mitchell, K. J., & Levin, Y. (2009) · Social Cognitive and Affective Neuroscience · doi:10.1093/scan/nsp022 · Cited by 194
Barch, D. M., Sabb, F. W., Carter, C. S., Braver, T. S., Noll, D. C., & Cohen, J. D. (1999) · NeuroImage · doi:10.1006/nimg.1999.0500 · Cited by 186
Interactions of Prefrontal Cortex in Relation to Awareness in Sensory Learning
McIntosh, A. R., Rajah, M. N., & Lobaugh, N. J. (1999) · Science · doi:10.1126/science.284.5419.1531 · Cited by 184
Reynolds, J. R., West, R., & Braver, T. (2009) · Cerebral Cortex · doi:10.1093/cercor/bhn164 · Cited by 181
Blind smell: brain activation induced by an undetected air-borne chemical
Sobel, N., Prabhakaran, V., Hartley, C. A., Desmond, J. E., Glover, G. H., Sullivan, E. V., & Gabrieli, J. D. E. (1999) · Brain · doi:10.1093/brain/122.2.209 · Cited by 168
Regional brain activity in women grieving a romantic relationship breakup
Najib, A., Lorberbaum, J. P., Kose, S., Bohning, D. E., & George, M. S. (2004) · American Journal of Psychiatry · doi:10.1176/appi.ajp.161.12.2245 · Cited by 161
Sensitivity of prefrontal cortex to changes in target probability: a functional MRI study
Casey, B. J., Forman, S. D., Franzen, P., Berkowitz, A., Braver, T. S., Nystrom, L. E., Thomas, K. M., & Noll, D. C. (2001) · Human Brain Mapping · doi:10.1002/hbm.1022 · Cited by 160
DelParigi, A., Chen, K., Salbe, A. D., Reiman, E. M., & Tataranni, P. A. (2005) · NeuroImage · doi:10.1016/j.neuroimage.2004.08.035 · Cited by 158
Rostral Anterior Cingulate Cortex Volume Correlates with Depressed Mood in Normal Healthy Children
Boes, A. D., McCormick, L. M., Coryell, W. H., & Nopoulos, P. (2008) · Biological Psychiatry · doi:10.1016/j.biopsych.2007.07.018 · Cited by 139
Activation of human medial prefrontal cortex during autonomic responses to hypoglycemia
Teves, D., Videen, T. O., Cryer, P. E., & Powers, W. J. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0307048101 · Cited by 138
Cerebral metabolic dysfunction and impaired vigilance in recently abstinent methamphetamine abusers
London, E. D., Berman, S. M., Voytek, B., Simon, S. L., Mandelkern, M. A., Monterosso, J., Thompson, P. M., Brody, A. L., Geaga, J. A., Hong, M. S., et al. (2005) · Biological Psychiatry · doi:10.1016/j.biopsych.2005.04.039 · Cited by 136
Iacoboni, M., Woods, R. P., & Mazziotta, J. C. (1996) · Journal of Neurophysiology · doi:10.1152/jn.1996.76.1.321 · Cited by 135
Dopamine D2 receptor availability and amphetamine-induced dopamine release in unipolar depression
Parsey, R. V., Oquendo, M. A., Zea-Ponce, Y., Rodenhiser, J., Kegeles, L. S., Pratap, M., Cooper, T. B., Van Heertum, R., Mann, J. J., & Laruelle, M. (2001) · Biological Psychiatry · doi:10.1016/s0006-3223(01)01089-7 · Cited by 133
Thanos, P. K., Michaelides, M., Piyis, Y. K., Wang, G., & Volkow, N. D. (2008) · Synapse · doi:10.1002/syn.20468 · Cited by 135
Gjedde, A., Kumakura, Y., Cumming, P., Linnet, J., & Møller, A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0912319107 · Cited by 130
Kling, M. A., Carson, R. E., Borg, L., Zametkin, A., Matochik, J. A., Schluger, J., Herscovitch, P., Rice, K. C., Ho, A., Eckelman, W. C., et al. (2000) · The Journal of Pharmacology and Experimental Therapeutics · doi:10.1016/s0022-3565(24)39007-x · Cited by 119
Adler, L. J., Gyulai, F. E., Diehl, D. J., Mintun, M. A., Winter, P. M., & Firestone, L. L. (1997) · Anesthesia & Analgesia · doi:10.1213/00000539-199701000-00023 · Cited by 174
Nofzinger, E. A., Buysse, D. J., Germain, A., Carter, C., Luna, B., Price, J. C., Meltzer, C. C., Miewald, J. M., Reynolds, C. F., & Kupfer, D. J. (2004) · Archives of General Psychiatry · doi:10.1001/archpsyc.61.7.695 · Cited by 113
Thanos, P. K., Michaelides, M., Benveniste, H., Wang, G. J., & Volkow, N. D. (2007) · Pharmacology Biochemistry and Behavior · doi:10.1016/j.pbb.2007.05.020 · Cited by 100
Functional activation in the cerebellum during working memory and simple speech tasks
Durisko, C., & Fiez, J. A. (2010) · Cortex · doi:10.1016/j.cortex.2009.09.009 · Cited by 100
Buysse, D. J., Nofzinger, E. A., Germain, A., Meltzer, C. C., Wood, A., Ombao, H., Kupfer, D. J., & Moore, R. Y. (2004) · SLEEP · doi:10.1093/sleep/27.7.1245 · Cited by 98
The scope of preserved procedural memory in amnesia
Cavaco, S. (2004) · Brain · doi:10.1093/brain/awh208 · Cited by 95
Altered striatal response to reward in bulimia nervosa after recovery
Wagner, A., Aizenstein, H., Venkatraman, V. K., Bischoff‐Grethe, A., Fudge, J., May, J. C., Frank, G. K., Bailer, U. F., Fischer, L., Putnam, K., et al. (2010) · International Journal of Eating Disorders · doi:10.1002/eat.20699 · Cited by 93
Attenuation of Counterregulatory Responses to Recurrent Hypoglycemia by Active Thalamic Inhibition
Arbelaez, A. M., Powers, W. J., Videen, T. O., Price, J. L., & Cryer, P. E. (2008) · Diabetes · doi:10.2337/db07-1329 · Cited by 92
Haemodialysis and cerebral oedema
Walters, R. J. L., Fox, N. C., Crum, W. R., Taube, D., & Thomas, D. J. (2001) · Nephron · doi:10.1159/000045903 · Cited by 87
Haahr, M. E., Fisher, P. M., Jensen, C. G., Frokjaer, V. G., Mahon, B. M., Madsen, K., Baaré, W. F. C., Lehel, S., Norremolle, A., Rabiner, E. A., et al. (2014) · Molecular Psychiatry · doi:10.1038/mp.2013.147 · Cited by 86
Early development of subcortical regions involved in non-cued attention switching
Casey, B. J., Davidson, M. C., Hara, Y., Thomas, K. M., Martinez, A., Galvan, A., Halperin, J. M., Rodríguez‐Aranda, C. E., & Tottenham, N. (2004) · Developmental Science · doi:10.1111/j.1467-7687.2004.00377.x · Cited by 80
Phonological processing in relation to reading: an fMRI study in deaf readers
Aparicio, M., Gounot, D., Demont, E., & Metz-Lutz, M.-N. (2007) · NeuroImage · doi:10.1016/j.neuroimage.2006.12.046 · Cited by 75
Vogt, B. A., Watanabe, H., Grootoonk, S., & Jones, A. K. P. (1995) · Human Brain Mapping · doi:10.1002/hbm.460030102 · Cited by 71
Lack of association between prior depressive episodes and cerebral [11C]PiB binding
Madsen, K., Hasselbalch, B. J., Frederiksen, K. S., Haahr, M. E., Gade, A., Law, I., Price, J. C., Knudsen, G. M., Kessing, L. V., & Hasselbalch, S. G. (2012) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2011.11.021 · Cited by 66
Tricomi, E., & Fiez, J. A. (2012) · Cognitive, Affective, & Behavioral Neuroscience · doi:10.3758/s13415-011-0077-3 · Cited by 64
Disrupted Amygdala Reactivity in Depressed 4- to 6-Year-Old Children
Gaffrey, M. S., Barch, D. M., Singer, J., Shenoy, R., & Luby, J. L. (2013) · Journal of the American Academy of Child & Adolescent Psychiatry · doi:10.1016/j.jaac.2013.04.009 · Cited by 62
Diurnal variation in regional brain glucose metabolism in depression
Germain, A., Nofzinger, E. A., Meltzer, C. C., Wood, A., Kupfer, D. J., Moore, R. Y., & Buysse, D. J. (2007) · Biological Psychiatry · doi:10.1016/j.biopsych.2006.09.043 · Cited by 60
Endogenous control and task representation: an fMRI study in algebraic problem-solving
Stocco, A., & Anderson, J. R. (2008) · Journal of Cognitive Neuroscience · doi:10.1162/jocn.2008.20089 · Cited by 59
Yarkoni, T., Gray, J. R., Chrastil, E. R., Barch, D. M., Green, L., & Braver, T. S. (2005) · Cognitive Brain Research · doi:10.1016/j.cogbrainres.2005.01.013 · Cited by 59
Frokjaer, V. G., Vinberg, M., Erritzoe, D., Baaré, W., Holst, K. K., Mortensen, E. L., Arfan, H., Madsen, J., Jernigan, T. L., Kessing, L. V., et al. (2010) · Neuropsychopharmacology · doi:10.1038/npp.2009.218 · Cited by 53
Hill, K. K., Campbell, M. C., McNeely, M. E., Karimi, M., Ushe, M., Tabbal, S. D., Hershey, T., Flores, H. P., Hartlein, J. M., Lugar, H. M., et al. (2013) · Experimental Neurology · doi:10.1016/j.expneurol.2012.12.003 · Cited by 52
Madsen, K., Erritzoe, D., Mortensen, E. L., Gade, A., Madsen, J., Baaré, W., Knudsen, G. M., & Hasselbalch, S. G. (2011) · Psychopharmacology · doi:10.1007/s00213-010-1926-4 · Cited by 45
Methods for assessing accuracy and reliability in functional MRI
Le, T. H., & Hu, X. P. (1997) · NMR in Biomedicine · doi:10.1002/(sici)1099-1492(199706/08)10:4/5<160::aid-nbm458>3.0.co;2-a · Cited by 46
van Berckel, B. N. M., Kegeles, L. S., Waterhouse, R., Guo, N., Hwang, D.-R., Huang, Y., Narendran, R., Van Heertum, R., & Laruelle, M. (2006) · Neuropsychopharmacology · doi:10.1038/sj.npp.1300902 · Cited by 43
Ebdlahad, S., Nofzinger, E. A., James, J. A., Buysse, D. J., Price, J. C., & Germain, A. (2013) · Psychiatry Research: Neuroimaging · doi:10.1016/j.pscychresns.2013.09.007 · Cited by 30
Insana, S. P., Banihashemi, L., Herringa, R. J., Kolko, D. J., & Germain, A. (2016) · Development and Psychopathology · doi:10.1017/s0954579415000589 · Cited by 27
Yatham, L. N., Liddle, P. F., Sossi, V., Erez, J., Vafai, N., Lam, R. W., & Blinder, S. (2012) · Archives of General Psychiatry · doi:10.1001/archgenpsychiatry.2011.1493 · Cited by 25
Hydrocortisone induced regional cerebral activity changes in schizophrenia: a PET scan study
Ganguli, R., Singh, A., Brar, J., Carter, C., & Mintun, M. (2002) · Schizophrenia Research · doi:10.1016/s0920-9964(01)00219-5 · Cited by 22
Neural features of sustained emotional information processing in autism spectrum disorder
Mazefsky, C. A., Collier, A., Golt, J., & Siegle, G. J. (2020) · Autism · doi:10.1177/1362361320903137 · Cited by 19
Stenbæk, D. S., Kristiansen, S., Burmester, D., Madsen, M. K., Frokjaer, V. G., Knudsen, G. M., & Fisher, P. M. (2019) · Human Brain Mapping · doi:10.1002/hbm.24511 · Cited by 11
In vivo PET Imaging of [11C]CIMBI-5, a 5-HT2AR Agonist Radiotracer in Nonhuman Primates
Prabhakaran, J., DeLorenzo, C., Zanderigo, F., Knudsen, G. M., Gilling, N., Pratap, M., Jorgensen, M. J., Daunais, J., Kaplan, J. R., Parsey, R. V., et al. (2019) · Journal of Pharmacy & Pharmaceutical Sciences · doi:10.18433/jpps30329 · Cited by 7
Metadata
- Authors
- Woods, R. P., Cherry, S. R., & Mazziotta, J. C.
- Venue
- Journal of Computer Assisted Tomography
- Published
- 1992-07
- Volume
- 16
- Issue
- 4
- Pages
- 620-633
- ISSN
- 0363-8715 (ISSN-L)
- OpenAlex
- W1990005524
- Cited by
- 1,912
- References
- 0
- FWCI
- 32.32
- Type
- journal article
- Language
- en
- Open access
- closed
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